Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 6.8e-285 983.4 527 100.0
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.3e-211 740.0 497 77.9
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 2.2e-211 739.2 498 78.1
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.1e-210 736.9 527 77.8
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.4e-210 736.5 520 75.6
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 2.7e-209 732.3 526 78.1
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 3.5e-209 731.9 497 77.3
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 4.6e-209 731.5 534 77.3
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.3e-208 729.9 522 77.2
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.3e-208 729.9 532 75.9
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.8e-208 729.6 492 77.6
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 5.1e-208 728.0 436 83.5
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 5.1e-208 728.0 539 75.9
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 3.3e-207 725.3 483 78.7
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 5.7e-207 724.5 522 78.9
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.2e-206 722.6 532 75.9
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 2.4e-205 719.2 520 77.5
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.1e-205 718.8 529 74.3
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 4.1e-205 718.4 494 75.5
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 2.6e-204 715.7 493 76.9
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.0e-203 713.8 487 77.6
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.7e-203 713.0 446 80.5
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 3.8e-203 711.8 524 75.0
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.1e-202 710.3 526 75.7
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 5.5e-202 708.0 525 75.6
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 5.5e-202 708.0 496 75.0
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 9.4e-202 707.2 528 75.4
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 1.2e-201 706.8 452 80.5
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 3.6e-201 705.3 484 75.8
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 3.6e-201 705.3 523 73.8
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 4.6e-201 704.9 454 79.1
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 4.6e-201 704.9 523 75.5
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.0e-200 703.7 534 74.7
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.9e-200 701.8 519 72.8
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 5.1e-200 701.4 530 71.5
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 6.7e-200 701.0 530 73.0
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 8.8e-200 700.7 489 75.7
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 2.5e-199 699.1 534 72.5
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.7e-198 696.4 422 83.6
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 3.7e-198 695.3 488 75.6
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 3.7e-198 695.3 533 73.4
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 3.7e-198 695.3 459 76.7
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 4.8e-198 694.9 493 73.6
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 4.8e-198 694.9 490 73.9
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 8.2e-198 694.1 494 73.9
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 8.2e-198 694.1 432 80.8
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 2.4e-197 692.6 542 73.1
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 2.4e-197 692.6 516 74.4
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 5.3e-197 691.4 489 73.2
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 9.1e-197 690.6 497 73.6
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.2e-196 690.3 493 73.4
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 2.0e-196 689.5 527 74.6
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.6e-196 689.1 490 74.5
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 2.6e-196 689.1 522 71.6
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 7.7e-196 687.6 480 74.6
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.7e-195 686.4 486 73.9
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 8.5e-195 684.1 530 69.4
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 2.5e-194 682.6 520 71.0
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 1.2e-193 680.2 484 73.8
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 1.0e-192 677.2 437 77.8
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 2.0e-191 672.9 524 72.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 5.7e-191 671.4 446 77.1
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 7.4e-191 671.0 530 72.1
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.7e-190 669.8 518 69.9
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.7e-190 669.8 527 71.5
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 8.2e-190 667.5 500 70.8
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.4e-189 666.8 423 79.2
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 1.4e-189 666.8 484 73.3
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.8e-189 666.4 495 71.1
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 1.8e-189 666.4 448 75.7
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 1.8e-189 666.4 489 71.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 1.0e-187 660.6 468 74.4
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 1.1e-186 657.1 506 70.2
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 7.2e-186 654.4 533 66.6
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.0e-184 650.6 427 75.9
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.4e-184 650.2 424 75.7
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.8e-184 649.8 424 75.7
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 3.9e-184 648.7 421 75.8
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 6.7e-184 647.9 425 75.1
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 6.7e-184 647.9 521 69.3
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.1e-183 647.1 523 64.4
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.0e-183 646.4 424 75.2
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 3.3e-183 645.6 424 75.2
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 7.4e-183 644.4 422 75.6
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 7.4e-183 644.4 422 75.6
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 7.4e-183 644.4 424 75.2
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 7.4e-183 644.4 449 72.8
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 1.3e-182 643.7 424 75.2
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.1e-181 640.6 514 69.3
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.8e-181 639.8 486 69.1
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 2.0e-180 636.3 493 70.0
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 3.5e-180 635.6 421 77.2
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 2.9e-179 632.5 424 74.5
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 4.7e-177 625.2 424 72.9
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.8e-176 623.2 494 69.0
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.3e-174 617.1 494 68.8
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 5.2e-168 595.1 424 71.2
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 8.8e-168 594.3 415 71.8
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 8.8e-168 594.3 521 64.3
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.8e-165 586.6 527 65.5
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.4e-165 586.3 519 60.9
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 9.1e-165 584.3 535 62.6
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.3e-163 580.5 525 65.3
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 5.0e-163 578.6 525 63.4
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.8e-161 572.8 367 79.6
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 1.5e-159 567.0 539 62.5
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 4.4e-159 565.5 538 62.8
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 7.5e-159 564.7 522 63.6
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 2.8e-158 562.8 530 60.8
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.4e-157 559.7 393 73.8
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 9.2e-157 557.8 505 58.6
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 2.3e-155 553.1 417 69.1
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 2.0e-151 540.0 466 62.2
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 4.1e-149 532.3 411 70.6
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 7.0e-149 531.6 420 68.3
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 7.0e-149 531.6 511 58.3
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 1.2e-148 530.8 456 66.0
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.7e-148 529.6 511 58.1
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 3.1e-144 516.2 482 58.3
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 9.8e-143 511.1 414 65.9
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 9.5e-138 494.6 404 62.4
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.7e-134 482.6 492 55.7
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.1e-130 471.1 479 54.5
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 5.6e-130 468.8 399 63.4
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 3.9e-123 446.0 485 55.7
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 9.6e-122 441.4 441 53.3
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 9.6e-122 441.4 431 54.8
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 9.6e-122 441.4 393 60.3
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 1.8e-120 437.2 479 53.7
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 6.9e-120 435.3 447 55.0
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.2e-119 434.5 365 64.7
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 2.6e-119 433.3 436 52.8
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 5.8e-119 432.2 498 52.8
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 8.1e-113 411.8 487 53.0
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 1.8e-112 410.6 669 40.4
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 2.9e-110 403.3 466 53.6
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.3e-107 394.4 421 50.8
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 3.1e-104 383.3 346 57.2
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 8.7e-99 365.2 456 48.2
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 2.8e-97 360.1 432 49.3
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 4.5e-95 352.8 344 57.6
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-94 351.3 281 66.5
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 5.1e-91 339.3 288 60.1
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 2.2e-89 334.0 245 71.4
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 4.2e-85 319.7 376 44.7
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 3.6e-84 316.6 532 39.7
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 1.1e-80 305.1 392 45.9
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 2.9e-78 297.0 288 56.9
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 2.6e-74 283.9 339 46.9
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.5e-69 268.1 267 59.9
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 2.0e-66 257.7 182 74.2
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.7e-65 254.6 350 46.9
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.4e-48 198.4 280 47.1
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 1.2e-36 158.7 96 77.1
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.3e-27 127.9 105 60.0
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 2.0e-26 124.8 106 63.2
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 4.4e-26 123.6 117 60.7
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.7e-25 121.7 269 36.8
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 4.9e-25 120.2 93 72.0
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 7.3e-21 106.3 148 43.2
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 1.2e-20 105.5 114 50.0
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 2.0e-18 98.2 155 43.2
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 9.9e-18 95.9 123 48.0
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 1.3e-17 95.5 114 47.4
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.9e-17 94.4 71 64.8
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 4.1e-16 90.5 219 36.1
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 3.5e-15 87.4 45 88.9
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 1.3e-14 85.5 61 60.7
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.1e-13 82.4 76 55.3
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 2.8e-12 77.8 158 35.4
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 3.6e-12 77.4 243 30.0
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 8.1e-12 76.3 46 78.3
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 5.8e-10 70.1 95 45.3
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 7.6e-10 69.7 81 55.6
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 1.1e-08 65.9 97 44.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 4.2e-08 63.9 199 24.6
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 7.1e-08 63.2 51 60.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.3e-06 58.9 311 23.2
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 5.1e-06 57.0 203 24.1


User provided reference genes

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