Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.3e-284 981.1 514 100.0
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 9.5e-191 670.6 532 68.0
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 9.5e-191 670.6 534 66.9
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.7e-187 659.8 523 65.6
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.7e-187 659.8 534 65.4
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 6.3e-187 657.9 525 66.7
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.3e-184 649.4 530 64.7
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.3e-183 645.6 531 63.8
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 9.5e-183 644.0 536 61.9
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.2e-182 643.7 519 65.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.0e-181 640.6 534 61.8
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.4e-181 640.2 535 64.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.8e-181 639.8 531 64.0
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 2.3e-181 639.4 533 63.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.1e-181 639.0 518 63.9
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 3.1e-181 639.0 530 63.0
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 4.0e-181 638.6 534 63.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 5.2e-181 638.3 534 61.6
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 6.8e-181 637.9 529 64.5
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.6e-180 636.0 527 64.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 2.6e-180 636.0 528 63.3
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 7.5e-180 634.4 528 64.6
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.9e-179 632.5 534 62.5
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 3.2e-178 629.0 522 64.2
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 5.4e-178 628.2 527 61.7
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.0e-177 624.8 523 63.1
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.3e-176 623.6 532 62.6
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-176 623.6 523 62.7
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.9e-175 619.8 524 62.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.5e-175 619.4 535 61.5
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.3e-175 619.0 534 61.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 5.6e-175 618.2 533 61.7
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.2e-174 617.1 527 62.0
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.2e-174 617.1 537 59.8
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.6e-174 616.7 531 61.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.6e-174 616.7 534 61.6
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 3.6e-174 615.5 532 68.0
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.6e-174 615.5 514 63.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 3.6e-174 615.5 557 59.4
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.4e-173 613.6 619 54.9
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.1e-173 612.5 533 60.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.9e-173 610.9 553 58.6
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.5e-172 610.1 528 61.0
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 2.2e-171 606.3 521 62.6
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.9e-171 605.9 531 60.1
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 1.4e-170 603.6 579 58.9
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 2.4e-170 602.8 527 61.3
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 2.1e-169 599.7 531 60.1
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 7.8e-169 597.8 527 60.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.0e-168 597.4 424 70.0
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 4.3e-167 592.0 533 59.8
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-166 590.5 533 59.8
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.6e-166 590.1 432 68.5
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.1e-166 589.7 520 58.5
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 8.1e-166 587.8 530 58.9
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 8.1e-166 587.8 530 58.9
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.4e-165 587.0 428 67.1
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.8e-165 586.6 533 59.3
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.5e-164 583.6 424 69.8
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 9.9e-164 580.9 533 58.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 8.3e-163 577.8 534 56.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.4e-162 577.0 528 58.9
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.6e-161 573.5 430 67.0
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.3e-160 570.5 511 59.5
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.7e-160 570.1 526 58.7
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.3e-160 569.7 526 58.7
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.0e-160 569.3 526 58.4
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 3.9e-160 568.9 457 62.4
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.5e-159 567.0 465 61.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.5e-159 566.2 469 62.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.3e-159 565.8 526 57.2
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.3e-159 565.5 465 61.1
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.6e-158 563.5 529 56.3
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 2.8e-158 562.8 535 55.1
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.2e-158 561.6 543 56.2
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 8.1e-158 561.2 577 55.6
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 8.1e-158 561.2 532 55.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.8e-157 560.1 531 58.0
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 5.8e-156 555.1 534 55.8
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.1e-154 550.8 367 70.3
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.1e-154 550.8 429 65.5
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 5.4e-154 548.5 519 56.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.2e-153 547.4 374 69.8
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.6e-153 547.0 431 63.6
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.1e-153 546.6 409 66.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.7e-153 546.2 431 64.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 4.6e-153 545.4 427 64.4
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 6.0e-153 545.0 386 69.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 6.0e-153 545.0 526 55.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 2.3e-152 543.1 374 70.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 2.3e-152 543.1 374 70.6
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.9e-152 542.3 527 55.6
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 6.6e-152 541.6 357 72.5
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 8.7e-152 541.2 525 54.9
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.5e-151 540.4 357 72.3
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 5.6e-151 538.5 415 66.3
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 7.3e-151 538.1 525 55.4
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.4e-147 524.6 372 68.0
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-146 524.2 349 71.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.2e-145 520.8 358 69.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.1e-145 520.0 530 53.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.3e-143 512.3 528 53.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.4e-141 507.3 365 65.5
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.2e-140 504.2 365 65.5
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.9e-139 499.6 416 60.6
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 4.9e-139 498.8 528 52.8
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.6e-137 492.3 352 66.5
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.5e-135 486.5 527 51.4
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 2.1e-134 483.4 444 54.5
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.7e-134 482.6 408 58.1
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.5e-132 477.2 299 74.2
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.8e-132 475.3 529 48.8
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.7e-131 473.8 421 56.3
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.9e-131 473.0 313 70.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.2e-129 467.6 388 57.5
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.7e-126 456.1 456 55.0
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.2e-124 451.1 521 48.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 7.6e-124 448.4 337 65.6
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.0e-120 438.0 544 49.3
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.3e-120 436.8 516 50.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.3e-118 428.7 267 74.5
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.9e-115 419.9 347 57.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 4.6e-113 412.5 325 62.8
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-111 407.9 425 52.9
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 9.1e-109 398.3 355 52.7
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 2.6e-108 396.7 355 51.5
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 3.4e-108 396.4 444 45.3
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.9e-108 395.6 355 51.5
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.9e-108 395.6 440 46.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 5.9e-108 395.6 445 45.2
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.9e-108 395.6 440 46.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 7.7e-108 395.2 445 45.2
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.7e-108 395.2 427 50.6
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.9e-107 393.3 351 51.6
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.5e-107 392.1 268 65.3
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 8.5e-107 391.7 361 51.2
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 2.5e-106 390.2 433 44.8
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.4e-104 384.4 359 50.4
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.8e-104 384.0 394 50.5
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 7.4e-103 378.6 312 62.2
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 9.7e-103 378.3 382 57.1
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.1e-101 374.8 421 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.2e-99 367.1 348 50.9
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.9e-99 366.7 209 79.9
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.9e-99 366.7 231 71.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.8e-99 366.3 449 43.0
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.8e-99 366.3 449 43.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 9.4e-98 361.7 450 42.4
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 9.4e-98 361.7 450 42.4
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 8.0e-97 358.6 299 53.2
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.0e-96 356.7 209 77.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 2.6e-79 300.4 296 48.0
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 7.5e-71 272.3 407 42.8
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 9.8e-71 271.9 519 37.6
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 9.2e-69 265.4 305 54.8
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.0e-64 251.9 310 51.0
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.8e-56 224.6 249 56.2
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.7e-54 218.0 543 33.5
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.4e-53 214.2 166 60.8
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.4e-45 187.6 278 36.7
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.3e-43 181.0 119 74.8
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 3.9e-43 180.3 248 43.5
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.1e-40 172.2 104 75.0
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.4e-38 162.5 293 39.6
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.5e-36 157.1 83 88.0
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.8e-32 144.8 82 80.5
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.9e-29 134.8 70 90.0
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 4.3e-26 123.6 65 90.8
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 7.1e-21 106.3 95 51.6
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 9.3e-21 105.9 92 56.5
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.1e-16 92.4 131 42.7
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 7.6e-15 86.3 141 44.0
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 3.5e-12 77.4 228 32.0
Mapoly0024s0099 Marchantia polymorpha HOM05D002303 ORTHO05D007639 8.5e-06 56.2 325 20.6


User provided reference genes

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