Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C770T7 Lonicera japonica HOM05D000073 ORTHO05D234352 5.2e-39 163.7 71 100.0
Lj5C247G5 Lonicera japonica HOM05D000073 ORTHO05D234476 2.3e-18 95.1 60 70.0
Lj8P158T73 Lonicera japonica HOM05D000073 ORTHO05D000033 1.6e-11 72.4 53 58.5
Ciclev10007996m.g Citrus clementina HOM05D000073 ORTHO05D000033 3.3e-09 64.7 53 52.8
GSVIVG01014399001 Vitis vinifera HOM05D000073 ORTHO05D000033 3.3e-09 64.7 53 52.8
Dinv08320 Davidia involucrata HOM05D000073 ORTHO05D000033 9.5e-09 63.2 53 50.9
CSS0036292 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 2.1e-08 62.0 53 49.1
Hma1.2p1_1565F.1_g290960 Hydrangea macrophylla HOM05D000073 ORTHO05D000033 2.1e-08 62.0 53 49.1
Peaxi162Scf00998g00142 Petunia axillaris HOM05D000073 ORTHO05D000033 2.1e-08 62.0 53 50.9
Phvul.005G082800 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 2.1e-08 62.0 53 50.9
Phvul.005G082900 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 2.1e-08 62.0 53 56.6
Manes.03G114000 Manihot esculenta HOM05D000073 ORTHO05D000033 2.8e-08 61.6 53 49.1
TAR144G0001 Trochodendron aralioides HOM05D000073 ORTHO05D000033 2.8e-08 61.6 53 52.8
VMungo1080G1830 Vigna mungo HOM05D000073 ORTHO05D000033 2.8e-08 61.6 53 50.9
ATR0752G043 Amborella trichopoda HOM05D000073 ORTHO05D000033 3.6e-08 61.2 53 45.3
Gohir.A13G144800 Gossypium hirsutum HOM05D000073 ORTHO05D000033 3.6e-08 61.2 53 49.1
Peaxi162Scf00998g00140 Petunia axillaris HOM05D000073 ORTHO05D000033 3.6e-08 61.2 52 50.0
Gohir.D13G149600 Gossypium hirsutum HOM05D000073 ORTHO05D000033 4.7e-08 60.8 53 49.1
Gorai.013G167400 Gossypium raimondii HOM05D000073 ORTHO05D000033 4.7e-08 60.8 53 49.1
Nitab4.5_0002375g0020 Nicotiana tabacum HOM05D000073 ORTHO05D000033 6.2e-08 60.5 53 49.1
Hma1.2p1_0148F.1_g066275 Hydrangea macrophylla HOM05D000073 ORTHO05D000033 8.1e-08 60.1 53 49.1
Oeu030451.1 Olea europaea HOM05D000073 ORTHO05D000033 8.1e-08 60.1 53 49.1
Peaxi162Scf00998g00141 Petunia axillaris HOM05D000073 ORTHO05D000033 1.1e-07 59.7 53 49.1
CsaV3_3G044560 Cucumis sativus L. HOM05D000073 ORTHO05D000033 1.4e-07 59.3 53 49.1
Eucgr.H00071 Eucalyptus grandis HOM05D000073 ORTHO05D000033 1.4e-07 59.3 53 49.1
MELO3C018247.2 Cucumis melo HOM05D000073 ORTHO05D000033 1.8e-07 58.9 53 49.1
Glyma.12G222800 Glycine max HOM05D000073 ORTHO05D000033 1.8e-07 58.9 53 49.1
TWI39G0132 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 1.8e-07 58.9 53 49.1
TAR624G1436 Trochodendron aralioides HOM05D000073 ORTHO05D000033 1.8e-07 58.9 53 49.1
CSS0019592 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 47.2
CSS0037303 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 47.2
Cc05_g12450 Coffea canephora HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 47.2
CsaV3_4G033920 Cucumis sativus L. HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 49.1
Solyc07g063390.3 Solanum lycopersicum HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 49.1
Sopen07g031550 Solanum pennellii HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 49.1
PGSC0003DMG400002462 Solanum tuberosum HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 49.1
TWI38G0489 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 2.4e-07 58.5 53 49.1
ECA236G1110 Erigeron canadensis HOM05D000073 ORTHO05D000033 3.1e-07 58.2 53 49.1
Lsat_1_v5_gn_5_81661 Lactuca sativa HOM05D000073 ORTHO05D000033 3.1e-07 58.2 53 47.2
Medtr2g079550 Medicago truncatula HOM05D000073 ORTHO05D000033 3.1e-07 58.2 53 45.3
Medtr2g079580 Medicago truncatula HOM05D000073 ORTHO05D000033 3.1e-07 58.2 53 47.2
Phvul.007G273800 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 3.1e-07 58.2 53 47.2
Psat5g244840 Pisum sativum HOM05D000073 ORTHO05D000033 3.1e-07 58.2 53 45.3
Sc14g0005200 Simmondsia chinensis HOM05D000073 ORTHO05D000033 3.1e-07 58.2 53 49.1
TPR.G38973 Trifolium pratense HOM05D000073 ORTHO05D000033 3.1e-07 58.2 55 49.1
VMungo1080G1234 Vigna mungo HOM05D000073 ORTHO05D000033 3.1e-07 58.2 52 50.0
EL10Ac4g08107 Beta vulgaris HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 47.2
Cc11_g06340 Coffea canephora HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 47.2
COL.COLO4_09446 Corchorus olitorius HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 47.2
MELO3C016718.2 Cucumis melo HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 49.1
Glyma.12G222900 Glycine max HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 47.2
Glyma.13G278700 Glycine max HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 47.2
Sopen02g024990 Solanum pennellii HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 49.1
TAR624G0524 Trochodendron aralioides HOM05D000073 ORTHO05D000033 4.0e-07 57.8 53 49.1
Actinidia09984 Actinidia chinensis HOM05D000073 ORTHO05D000033 5.2e-07 57.4 46 52.2
Aqoxy1G02610 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 5.2e-07 57.4 53 49.1
CAN.G162.85 Capsicum annuum HOM05D000073 ORTHO05D000033 5.2e-07 57.4 53 47.2
CsaV3_3G044550 Cucumis sativus L. HOM05D000073 ORTHO05D000033 5.2e-07 57.4 52 46.2
MBI07_g22614_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 5.2e-07 57.4 53 47.2
MBI07_g22619_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 5.2e-07 57.4 53 45.3
Nitab4.5_0002375g0010 Nicotiana tabacum HOM05D000073 ORTHO05D000033 5.2e-07 57.4 52 48.1
QL05p074364 Quercus lobata HOM05D000073 ORTHO05D000033 5.2e-07 57.4 53 43.4
TWI38G1789 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 5.2e-07 57.4 53 45.3
Cfa020539 Carpinus fangiana HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 47.2
MELO3C018245.2 Cucumis melo HOM05D000073 ORTHO05D000033 6.8e-07 57.0 52 46.2
FvH4_3g02481 Fragaria vesca HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 43.4
HanXRQChr04g0095431 Helianthus annuus HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 47.2
HanXRQChr15g0494491 Helianthus annuus HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 47.2
MBI07_g22615_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 45.3
Os04g0513400 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 41.5
Potri.001G403900 Populus trichocarpa HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 49.1
Potri.004G019500 Populus trichocarpa HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 43.4
PGR142G4286 Punica granatum HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 45.3
QL08p019542 Quercus lobata HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 49.1
Sabra16G0265500 Salix brachista HOM05D000073 ORTHO05D000033 6.8e-07 57.0 53 49.1
EL10Ac4g08106 Beta vulgaris HOM05D000073 ORTHO05D000033 8.9e-07 56.6 53 45.3
Cc11_g06370 Coffea canephora HOM05D000073 ORTHO05D000033 8.9e-07 56.6 53 45.3
Duzib170G0688 Durio zibethinus HOM05D000073 ORTHO05D000033 8.9e-07 56.6 53 45.3
Duzib170G0911 Durio zibethinus HOM05D000073 ORTHO05D000033 8.9e-07 56.6 53 45.3
Sabra04G0010800 Salix brachista HOM05D000073 ORTHO05D000033 8.9e-07 56.6 53 45.3
Solyc02g080290.3 Solanum lycopersicum HOM05D000073 ORTHO05D000033 8.9e-07 56.6 53 47.2
vmacro11827 Vaccinium macrocarpon HOM05D000073 ORTHO05D000033 8.9e-07 56.6 53 45.3
AT1G61810 Arabidopsis thaliana HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 45.3
ECA240G0069 Erigeron canadensis HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 45.3
Migut.H01917 Erythranthe guttata HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 47.2
Lsat_1_v5_gn_9_97401 Lactuca sativa HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 45.3
Nitab4.5_0001204g0020 Nicotiana tabacum HOM05D000073 ORTHO05D000033 1.2e-06 56.2 52 46.2
Nitab4.5_0002375g0030 Nicotiana tabacum HOM05D000073 ORTHO05D000033 1.2e-06 56.2 52 46.2
Nitab4.5_0002375g0040 Nicotiana tabacum HOM05D000073 ORTHO05D012321 1.2e-06 56.2 52 46.2
Rhsim06G0195500 Rhododendron simsii HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 47.2
RcHm_v2.0_Chr5g0003791 Rosa chinensis HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 41.5
SEGI_00647 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 45.3
SEGI_40159 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 1.2e-06 56.2 53 45.3
CARHR101350 Cardamine hirsuta HOM05D000073 ORTHO05D000033 1.5e-06 55.8 55 47.3
Cc05_g12440 Coffea canephora HOM05D000073 ORTHO05D000033 1.5e-06 55.8 53 47.2
DCAR_013084 Daucus carota HOM05D000073 ORTHO05D000033 1.5e-06 55.8 53 47.2
Nn8g40748 Nelumbo nucifera HOM05D000073 ORTHO05D000033 1.5e-06 55.8 53 41.5
QL05p074412 Quercus lobata HOM05D000073 ORTHO05D000033 1.5e-06 55.8 53 43.4
SEGI_27376 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 1.5e-06 55.8 53 41.5
CAN.G162.83 Capsicum annuum HOM05D000073 ORTHO05D000033 2.0e-06 55.5 52 46.2
Cc05_g12470 Coffea canephora HOM05D000073 ORTHO05D000033 2.0e-06 55.5 53 45.3
HanXRQChr11g0328311 Helianthus annuus HOM05D000073 ORTHO05D000033 2.0e-06 55.5 53 47.2
MBI07_g31515_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 2.0e-06 55.5 55 47.3
SEGI_25879 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 2.0e-06 55.5 53 47.2
SEGI_26673 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 2.0e-06 55.5 53 47.2
HanXRQChr04g0095411 Helianthus annuus HOM05D000073 ORTHO05D000033 2.6e-06 55.1 53 45.3
Lalb_Chr20g0109771 Lupinus albus HOM05D000073 ORTHO05D000033 2.6e-06 55.1 53 45.3
MBI19_g25349_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 2.6e-06 55.1 52 48.1
Nitab4.5_0001204g0040 Nicotiana tabacum HOM05D000073 ORTHO05D000033 2.6e-06 55.1 52 44.2
Oeu008020.1 Olea europaea HOM05D000073 ORTHO05D000033 2.6e-06 55.1 53 47.2
Sed0010700 Sechium edule HOM05D000073 ORTHO05D000033 2.6e-06 55.1 53 47.2
SEGI_24164 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 2.6e-06 55.1 54 46.3
Sc07g0002610 Simmondsia chinensis HOM05D000073 ORTHO05D000033 2.6e-06 55.1 53 45.3
Cc11_g06350 Coffea canephora HOM05D000073 ORTHO05D000033 3.4e-06 54.7 53 43.4
HanXRQChr05g0154311 Helianthus annuus HOM05D000073 ORTHO05D000033 3.4e-06 54.7 53 45.3
Lsat_1_v5_gn_7_105501 Lactuca sativa HOM05D000073 ORTHO05D000033 3.4e-06 54.7 52 50.0
Potri.004G019300 Populus trichocarpa HOM05D000073 ORTHO05D000033 3.4e-06 54.7 53 43.4
Prupe.4G186400 Prunus persica HOM05D000073 ORTHO05D000033 3.4e-06 54.7 46 47.8
PGR031G2592 Punica granatum HOM05D000073 ORTHO05D000033 3.4e-06 54.7 54 44.4
Solyc02g080300.3 Solanum lycopersicum HOM05D000073 ORTHO05D000033 3.4e-06 54.7 53 47.2
Thecc.07G076000 Theobroma cacao HOM05D000073 ORTHO05D000033 3.4e-06 54.7 53 45.3
unitig_26.g9538 Utricularia gibba HOM05D000073 ORTHO05D000033 3.4e-06 54.7 46 47.8
HPP92_022097 Vanilla planifolia HOM05D000073 ORTHO05D000033 3.4e-06 54.7 53 45.3
MSTRG.14371 Avicennia marina HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 45.3
Carub.0002s0324 Capsella rubella HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 43.4
AUR62029347 Chenopodium quinoa HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 45.3
FAN18G2059 Fragaria x ananassa HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 45.3
Sp2g02700 Schrenkiella parvula HOM05D000073 ORTHO05D000033 4.4e-06 54.3 52 44.2
SEGI_21257 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 4.4e-06 54.3 54 46.3
Solyc02g080310.2 Solanum lycopersicum HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 47.2
Sopen02g025000 Solanum pennellii HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 47.2
Sopen02g025010 Solanum pennellii HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 47.2
TPR.G7649 Trifolium pratense HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 45.3
HPP92_022096 Vanilla planifolia HOM05D000073 ORTHO05D000033 4.4e-06 54.3 53 45.3
Aqoxy1G02605 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 5.8e-06 53.9 53 45.3
Aqoxy1G02606 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 5.8e-06 53.9 53 45.3
MSTRG.14370 Avicennia marina HOM05D000073 ORTHO05D000033 5.8e-06 53.9 53 43.4
CSS0012343 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 5.8e-06 53.9 52 50.0
CDE04G1513 Ceratophyllum demersum HOM05D000073 ORTHO05D000033 5.8e-06 53.9 53 41.5
Glyma.13G278600 Glycine max HOM05D000073 ORTHO05D000033 5.8e-06 53.9 53 45.3
HanXRQChr03g0079711 Helianthus annuus HOM05D000073 ORTHO05D000033 5.8e-06 53.9 53 45.3
SEGI_36246 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 5.8e-06 53.9 54 46.3
Aa31LG2G9030 Aethionema arabicum HOM05D000073 ORTHO05D000033 7.6e-06 53.5 52 46.2
Aa31LG6G3740 Aethionema arabicum HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 39.6
CARHR050500 Cardamine hirsuta HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 43.4
CDE06G2525 Ceratophyllum demersum HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 41.5
DCAR_017159 Daucus carota HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 45.3
Eucgr.K00916 Eucalyptus grandis HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 45.3
HanXRQChr08g0218491 Helianthus annuus HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 45.3
MD10G1316200 Malus domestica HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 39.6
Oeu015732.1 Olea europaea HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 41.5
Peaxi162Scf00079g00137 Petunia axillaris HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 43.4
Potri.004G019700 Populus trichocarpa HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 41.5
Prupe.4G024400 Prunus persica HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 41.5
SEGI_06121 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 7.6e-06 53.5 52 44.2
SEGI_12762 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 7.6e-06 53.5 53 43.4
Actinidia24345 Actinidia chinensis HOM05D000073 ORTHO05D000033 9.9e-06 53.1 53 47.2
CDE11G1123 Ceratophyllum demersum HOM05D000073 ORTHO05D000033 9.9e-06 53.1 53 41.5
Ciclev10014887m.g Citrus clementina HOM05D000073 ORTHO05D000033 9.9e-06 53.1 53 41.5
Eucgr.E04103 Eucalyptus grandis HOM05D000073 ORTHO05D000033 9.9e-06 53.1 53 39.6
SEGI_09393 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 9.9e-06 53.1 53 45.3
Solyc07g063370.2 Solanum lycopersicum HOM05D000073 ORTHO05D000033 9.9e-06 53.1 52 44.2


User provided reference genes

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