Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C741G0 Lonicera japonica HOM05D002299 ORTHO05D002358 1.8e-53 212.2 101 100.0
Lj5A722T7 Lonicera japonica HOM05D002299 ORTHO05D002358 1.1e-26 123.2 61 98.4
Thecc.09G190200 Theobroma cacao HOM05D002299 ORTHO05D002358 2.0e-20 102.4 60 76.7
GSVIVG01010913001 Vitis vinifera HOM05D002299 ORTHO05D002358 2.0e-20 102.4 60 78.3
Manes.03G073800 Manihot esculenta HOM05D002299 ORTHO05D002358 7.7e-20 100.5 60 75.0
CANSAT01G2683 Cannabis sativa HOM05D002299 ORTHO05D002358 2.2e-19 99.0 60 76.7
Atru.chr13.2636 Acer truncatum HOM05D002299 ORTHO05D002358 2.9e-19 98.6 59 76.3
Potri.018G132100 Populus trichocarpa HOM05D002299 ORTHO05D002358 3.8e-19 98.2 60 75.0
Haze_00271 Corylus avellana HOM05D002299 ORTHO05D002358 5.0e-19 97.8 60 75.0
CiPaw.06G042600 Carya illinoinensis HOM05D002299 ORTHO05D002358 6.5e-19 97.4 60 73.3
Cpa.g.sc115.48 Carica papaya HOM05D002299 ORTHO05D002358 4.2e-18 94.7 60 71.7
Duzib150G1653 Durio zibethinus HOM05D002299 ORTHO05D002358 5.5e-18 94.4 60 71.7
Sabra18G0111800 Salix brachista HOM05D002299 ORTHO05D002358 5.5e-18 94.4 60 71.7
Lalb_Chr24g0393771 Lupinus albus HOM05D002299 ORTHO05D002358 7.2e-18 94.0 62 69.4
Hma1.2p1_0314F.1_g121940 Hydrangea macrophylla HOM05D002299 ORTHO05D002358 9.4e-18 93.6 60 68.3
Dinv02610 Davidia involucrata HOM05D002299 ORTHO05D002358 1.6e-17 92.8 60 66.7
Potri.006G070400 Populus trichocarpa HOM05D002299 ORTHO05D002358 1.6e-17 92.8 60 73.3
PGR044G1678 Punica granatum HOM05D002299 ORTHO05D002358 1.6e-17 92.8 60 68.3
Glyma.01G002400 Glycine max HOM05D002299 ORTHO05D002358 2.1e-17 92.4 63 69.8
Lj2g0008448 Lotus japonicus HOM05D002299 ORTHO05D002358 2.7e-17 92.0 63 66.7
TWI63G0522 Tripterygium wilfordii HOM05D002299 ORTHO05D002358 2.7e-17 92.0 60 68.3
Ciclev10022647m.g Citrus clementina HOM05D002299 ORTHO05D002358 3.6e-17 91.7 60 68.3
Dinv00318 Davidia involucrata HOM05D002299 ORTHO05D002358 3.6e-17 91.7 60 65.0
TPR.G35489 Trifolium pratense HOM05D002299 ORTHO05D002358 4.7e-17 91.3 60 70.0
Glyma.07G129900 Glycine max HOM05D002299 ORTHO05D002358 6.1e-17 90.9 63 68.3
Glyma.08G028800 Glycine max HOM05D002299 ORTHO05D002358 6.1e-17 90.9 60 70.0
Potri.012G049101 Populus trichocarpa HOM05D002299 ORTHO05D002358 6.1e-17 90.9 60 71.7
CARHR103900 Cardamine hirsuta HOM05D002299 ORTHO05D002358 7.9e-17 90.5 60 68.3
Medtr6g092790 Medicago truncatula HOM05D002299 ORTHO05D002358 1.0e-16 90.1 60 70.0
Psat1g050920 Pisum sativum HOM05D002299 ORTHO05D002358 1.0e-16 90.1 60 70.0
Ca_25627_v3 Cicer arietinum L. HOM05D002299 ORTHO05D002358 1.8e-16 89.4 60 66.7
arahy.Tifrunner.gnm1.ann1.N1SVVP Arachis hypogaea HOM05D002299 ORTHO05D002358 2.3e-16 89.0 60 68.3
arahy.Tifrunner.gnm1.ann1.XYC619 Arachis hypogaea HOM05D002299 ORTHO05D002358 2.3e-16 89.0 60 68.3
CsaV3_1G032150 Cucumis sativus L. HOM05D002299 ORTHO05D002358 2.3e-16 89.0 60 66.7
Hma1.2p1_0474F.1_g160615 Hydrangea macrophylla HOM05D002299 ORTHO05D002358 2.3e-16 89.0 59 64.4
MELO3C017400.2 Cucumis melo HOM05D002299 ORTHO05D002358 3.0e-16 88.6 60 65.0
TPR.G25451 Trifolium pratense HOM05D002299 ORTHO05D002358 3.0e-16 88.6 59 67.8
ClCG06G013940 Citrullus lanatus HOM05D002299 ORTHO05D002358 3.9e-16 88.2 60 65.0
Prupe.1G066500 Prunus persica HOM05D002299 ORTHO05D002358 3.9e-16 88.2 60 65.0
Rhsim01G0112100 Rhododendron simsii HOM05D002299 ORTHO05D002358 3.9e-16 88.2 60 63.3
vmacro20775 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 3.9e-16 88.2 60 63.3
Aa31sc441G40 Aethionema arabicum HOM05D002299 ORTHO05D002358 5.1e-16 87.8 60 66.7
Carub.0003s2732 Capsella rubella HOM05D002299 ORTHO05D002358 5.1e-16 87.8 60 68.3
MD13G1235500 Malus domestica HOM05D002299 ORTHO05D002358 5.1e-16 87.8 60 65.0
MD16G1240200 Malus domestica HOM05D002299 ORTHO05D002358 5.1e-16 87.8 60 65.0
Nn8g41001 Nelumbo nucifera HOM05D002299 ORTHO05D002358 5.1e-16 87.8 60 63.3
FAN07G0696 Fragaria x ananassa HOM05D002299 ORTHO05D002358 6.7e-16 87.4 60 63.3
Eucgr.L01776 Eucalyptus grandis HOM05D002299 ORTHO05D002358 8.8e-16 87.0 60 61.7
Lj4g0009926 Lotus japonicus HOM05D002299 ORTHO05D002358 8.8e-16 87.0 60 68.3
RcHm_v2.0_Chr4g0398131 Rosa chinensis HOM05D002299 ORTHO05D002358 8.8e-16 87.0 60 63.3
THA.LOC104815321 Tarenaya hassleriana HOM05D002299 ORTHO05D002358 1.5e-15 86.3 60 66.7
AL3G43890 Arabidopsis lyrata HOM05D002299 ORTHO05D002358 2.6e-15 85.5 60 65.0
AT2G06925 Arabidopsis thaliana HOM05D002299 ORTHO05D002358 2.6e-15 85.5 60 65.0
Lsat_1_v5_gn_7_57841 Lactuca sativa HOM05D002299 ORTHO05D002358 2.6e-15 85.5 63 60.3
THA.LOC104808905 Tarenaya hassleriana HOM05D002299 ORTHO05D002358 2.6e-15 85.5 60 63.3
vmacro20773 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 2.6e-15 85.5 60 61.7
Eucgr.C00541 Eucalyptus grandis HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 60.0
FvH4_4g06380 Fragaria vesca HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 61.7
FAN17G1324 Fragaria x ananassa HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 61.7
FAN22G1906 Fragaria x ananassa HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 61.7
Gohir.A05G001700 Gossypium hirsutum HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 60.0
Gohir.D05G002000 Gossypium hirsutum HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 61.7
Gorai.009G001900 Gossypium raimondii HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 61.7
Sc14g0001400 Simmondsia chinensis HOM05D002299 ORTHO05D002358 3.3e-15 85.1 60 61.7
PSO144G0139 Papaver somniferum HOM05D002299 ORTHO05D002358 9.7e-15 83.6 60 58.3
PSO325G0017 Papaver somniferum HOM05D002299 ORTHO05D002358 9.7e-15 83.6 60 58.3
HanXRQChr14g0437451 Helianthus annuus HOM05D002299 ORTHO05D002358 1.3e-14 83.2 63 57.1
MBI12_g05371_MAGBIO Magnolia biondii HOM05D002299 ORTHO05D002358 1.3e-14 83.2 60 61.7
VMungo0464G1047 Vigna mungo HOM05D002299 ORTHO05D002358 1.3e-14 83.2 60 65.0
A05p18240 Brassica napus HOM05D002299 ORTHO05D002358 1.7e-14 82.8 60 61.7
C06p14970 Brassica napus HOM05D002299 ORTHO05D002358 1.7e-14 82.8 60 61.7
BolC6t36674H Brassica oleracea HOM05D002299 ORTHO05D002358 1.7e-14 82.8 60 61.7
BraA05t20719Z Brassica rapa HOM05D002299 ORTHO05D002358 1.7e-14 82.8 60 61.7
Phvul.004G177100 Phaseolus vulgaris HOM05D002299 ORTHO05D002358 1.7e-14 82.8 60 65.0
Aqoxy7G02715 Aquilegia oxysepala HOM05D002299 ORTHO05D002358 2.2e-14 82.4 60 61.7
Sp3g24920 Schrenkiella parvula HOM05D002299 ORTHO05D002358 2.2e-14 82.4 60 61.7
Eucgr.C00294 Eucalyptus grandis HOM05D002299 ORTHO05D002358 2.8e-14 82.0 60 61.7
Hund09048 Selenicereus undatus HOM05D002299 ORTHO05D002358 2.8e-14 82.0 53 66.0
BcaB02g10918 Brassica carinata HOM05D002299 ORTHO05D002358 3.7e-14 81.6 60 61.7
Thhalv10002685m.g Eutrema salsugineum HOM05D002299 ORTHO05D002358 3.7e-14 81.6 60 61.7
CSS0008405 Camellia sinensis var. sinensis HOM05D002299 ORTHO05D002358 4.8e-14 81.3 60 58.3
AUR62021334 Chenopodium quinoa HOM05D002299 ORTHO05D002358 6.3e-14 80.9 59 62.7
Cc06_g22200 Coffea canephora HOM05D002299 ORTHO05D002358 6.3e-14 80.9 57 61.4
TAR383G0293 Trochodendron aralioides HOM05D002299 ORTHO05D002358 6.3e-14 80.9 60 58.3
ATR0564G112 Amborella trichopoda HOM05D002299 ORTHO05D002358 1.1e-13 80.1 60 60.0
HPP92_009353 Vanilla planifolia HOM05D002299 ORTHO05D002358 1.1e-13 80.1 60 61.7
AUR62033249 Chenopodium quinoa HOM05D002299 ORTHO05D002358 1.4e-13 79.7 59 61.0
ECA240G3969 Erigeron canadensis HOM05D002299 ORTHO05D002358 1.4e-13 79.7 63 54.0
Sed0009027 Sechium edule HOM05D002299 ORTHO05D002358 1.8e-13 79.3 60 58.3
EL10Ac8g18321 Beta vulgaris HOM05D002299 ORTHO05D002358 2.4e-13 79.0 63 58.7
vmacro20774 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 5.3e-13 77.8 60 53.3
CSS0040929 Camellia sinensis var. sinensis HOM05D002299 ORTHO05D002358 7.0e-13 77.4 60 55.0
HanXRQChr03g0067351 Helianthus annuus HOM05D002299 ORTHO05D002358 7.0e-13 77.4 63 54.0
CDE05G2837 Ceratophyllum demersum HOM05D002299 ORTHO05D002358 3.5e-12 75.1 60 53.3
Nitab4.5_0007054g0010 Nicotiana tabacum HOM05D002299 ORTHO05D002358 4.5e-12 74.7 59 54.2
Oeu021033.1 Olea europaea HOM05D002299 ORTHO05D002358 5.9e-12 74.3 57 54.4
Oeu028836.1 Olea europaea HOM05D002299 ORTHO05D002358 5.9e-12 74.3 58 53.4
QL09p007489 Quercus lobata HOM05D002299 ORTHO05D002358 5.9e-12 74.3 61 54.1
Peaxi162Scf00320g00715 Petunia axillaris HOM05D002299 ORTHO05D002358 1.0e-11 73.6 59 52.5
CDE05G2010 Ceratophyllum demersum HOM05D002299 ORTHO05D002358 1.3e-11 73.2 60 50.0
Medtr8g101550 Medicago truncatula HOM05D002299 ORTHO05D002358 1.3e-11 73.2 78 48.7
Rhsim01G0112300 Rhododendron simsii HOM05D002299 ORTHO05D002358 1.3e-11 73.2 94 41.5
Eucgr.C00463 Eucalyptus grandis HOM05D002299 ORTHO05D002358 1.7e-11 72.8 50 58.0
Nitab4.5_0000413g0150 Nicotiana tabacum HOM05D002299 ORTHO05D002358 1.7e-11 72.8 59 52.5
Sopen07g005610 Solanum pennellii HOM05D002299 ORTHO05D002358 2.2e-11 72.4 60 51.7
Oeu036946.1 Olea europaea HOM05D002299 ORTHO05D002358 5.0e-11 71.2 57 54.4
unitig_746.g26792 Utricularia gibba HOM05D002299 ORTHO05D002358 8.5e-11 70.5 58 50.0
CAN.G35.2 Capsicum annuum HOM05D002299 ORTHO05D002358 1.1e-10 70.1 59 50.8
SalBow5G5168 Salvia bowleyana HOM05D002299 ORTHO05D002358 1.5e-10 69.7 63 49.2
Migut.L01908 Erythranthe guttata HOM05D002299 ORTHO05D002358 1.9e-10 69.3 60 50.0
DCAR_019830 Daucus carota HOM05D002299 ORTHO05D002358 2.5e-10 68.9 59 54.2
Rhsim03G0268400 Rhododendron simsii HOM05D002299 ORTHO05D002358 4.2e-10 68.2 58 50.0
Solyc07g014730.3 Solanum lycopersicum HOM05D002299 ORTHO05D002358 4.2e-10 68.2 60 48.3
PGSC0003DMG400029964 Solanum tuberosum HOM05D002299 ORTHO05D002358 4.2e-10 68.2 60 48.3
MSTRG.10459 Avicennia marina HOM05D002299 ORTHO05D002358 1.2e-09 66.6 59 42.4
DCAR_019790 Daucus carota HOM05D002299 ORTHO05D002358 1.2e-09 66.6 59 50.8
Os03g0708000 Oryza sativa ssp. japonica HOM05D002299 ORTHO05D002358 1.2e-09 66.6 59 52.5
Cfa016181 Carpinus fangiana HOM05D002299 ORTHO05D002358 1.6e-09 66.2 57 49.1
SGA_v2.0_scaffold21G09628 Striga asiatica HOM05D002299 ORTHO05D002358 2.1e-09 65.9 59 45.8
vmacro22290 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 4.7e-09 64.7 58 46.6
Zm00001eb216590 Zea mays HOM05D002299 ORTHO05D002358 4.7e-09 64.7 58 51.7
CiPaw.06G042800 Carya illinoinensis HOM05D002299 ORTHO05D002358 1.4e-08 63.2 53 50.9
Sed0003442 Sechium edule HOM05D002299 ORTHO05D002358 2.3e-08 62.4 58 50.0
Nn8g41002 Nelumbo nucifera HOM05D002299 ORTHO05D002358 4.0e-08 61.6 69 43.5
CiPaw.06G042900 Carya illinoinensis HOM05D002299 ORTHO05D002358 5.2e-08 61.2 53 49.1
SEGI_24817 Sequoiadendron giganteum HOM05D002299 ORTHO05D002358 5.2e-08 61.2 60 45.0
Zm00001eb011380 Zea mays HOM05D002299 ORTHO05D002358 5.7e-07 57.8 58 44.8
SGA_v2.0_scaffold21G09633 Striga asiatica HOM05D002299 ORTHO05D002358 7.5e-07 57.4 56 42.9
Eucgr.C00515 Eucalyptus grandis HOM05D002299 ORTHO05D002358 2.8e-06 55.5 40 52.5
Os11g0546600 Oryza sativa ssp. japonica HOM05D002299 ORTHO05D002358 3.7e-06 55.1 63 39.7
Zm00001eb197570 Zea mays HOM05D002299 ORTHO05D002358 6.3e-06 54.3 62 43.5


User provided reference genes

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