Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 8.0e-168 593.6 281 100.0
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.2e-131 473.4 278 78.1
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.6e-131 471.5 282 78.4
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.0e-130 470.3 283 79.2
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.0e-130 470.3 277 78.3
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.3e-130 469.2 282 77.7
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 8.7e-130 467.2 278 78.1
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 3.3e-129 465.3 263 79.1
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.4e-127 459.9 281 76.9
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 9.0e-127 457.2 280 73.9
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 5.8e-126 454.5 276 77.5
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 5.8e-126 454.5 281 75.4
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.3e-125 453.4 246 81.7
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.3e-125 453.4 246 80.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.9e-124 449.5 242 81.0
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 3.2e-124 448.7 272 76.1
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.2e-124 448.4 269 75.8
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 9.3e-124 447.2 252 79.4
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 9.3e-124 447.2 279 77.1
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.6e-123 446.4 236 83.9
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 2.1e-123 446.0 236 83.5
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.0e-122 443.7 252 81.0
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.3e-122 442.6 256 78.9
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 2.3e-122 442.6 251 79.3
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 3.0e-122 442.2 252 79.4
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 3.0e-122 442.2 258 79.5
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 3.0e-122 442.2 260 78.1
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 6.7e-122 441.0 270 75.9
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 6.7e-122 441.0 253 78.7
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 6.7e-122 441.0 249 79.9
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 6.7e-122 441.0 252 79.0
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 8.7e-122 440.7 249 80.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.1e-121 440.3 268 74.3
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.1e-121 440.3 253 78.3
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.5e-121 439.9 236 80.9
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.9e-121 439.5 249 79.5
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.5e-121 439.1 246 80.1
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.3e-121 438.7 249 79.5
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 5.6e-121 438.0 248 79.0
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 5.6e-121 438.0 236 80.1
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 7.4e-121 437.6 252 78.6
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 9.6e-121 437.2 250 78.4
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 9.6e-121 437.2 229 83.0
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.3e-120 436.8 252 79.0
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.1e-120 436.0 252 77.8
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.8e-120 435.6 254 76.0
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.8e-120 435.6 263 76.8
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.8e-120 435.6 237 81.4
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.8e-120 435.6 253 78.7
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 2.8e-120 435.6 249 77.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 4.8e-120 434.9 253 75.9
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 4.8e-120 434.9 253 76.3
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 4.8e-120 434.9 235 81.7
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 6.2e-120 434.5 271 73.8
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 6.2e-120 434.5 268 75.0
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 8.2e-120 434.1 252 77.4
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 8.2e-120 434.1 253 78.3
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.1e-119 433.7 249 77.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.1e-119 433.7 264 75.8
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.1e-119 433.7 235 80.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.8e-119 433.0 256 77.0
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.8e-119 433.0 253 77.9
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.4e-119 432.6 251 78.5
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.4e-119 432.6 243 80.2
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.4e-119 432.6 268 74.3
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 3.1e-119 432.2 234 81.6
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 3.1e-119 432.2 254 77.2
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.1e-119 432.2 254 76.0
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 3.1e-119 432.2 250 78.8
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 4.0e-119 431.8 242 78.5
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 4.0e-119 431.8 245 78.4
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 5.3e-119 431.4 253 75.9
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 5.3e-119 431.4 253 77.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 6.9e-119 431.0 254 77.6
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 6.9e-119 431.0 252 78.2
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 9.0e-119 430.6 253 78.3
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 9.0e-119 430.6 248 78.6
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 9.0e-119 430.6 248 78.6
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.2e-118 430.3 243 79.0
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.5e-118 429.9 242 79.3
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 2.6e-118 429.1 252 76.2
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.4e-118 428.7 234 80.8
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 4.5e-118 428.3 258 77.1
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 4.5e-118 428.3 245 77.6
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 5.8e-118 427.9 251 76.5
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 5.8e-118 427.9 253 75.5
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 5.8e-118 427.9 250 78.4
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 5.8e-118 427.9 255 78.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 7.6e-118 427.6 248 75.8
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.3e-117 426.8 236 79.7
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.8e-117 425.2 254 75.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.8e-117 425.2 254 75.2
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.9e-117 424.9 245 77.6
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 6.5e-117 424.5 250 75.2
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 6.5e-117 424.5 271 71.6
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 6.5e-117 424.5 233 79.4
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 6.5e-117 424.5 248 76.2
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 6.5e-117 424.5 260 75.0
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-116 423.7 250 75.2
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.1e-116 423.7 250 75.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.1e-116 423.7 250 76.4
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.1e-116 423.7 233 80.7
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.4e-116 423.3 233 81.1
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.5e-116 422.5 243 79.0
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 2.5e-116 422.5 231 80.5
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 4.2e-116 421.8 250 76.0
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 5.5e-116 421.4 250 75.2
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 5.5e-116 421.4 250 75.6
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 5.5e-116 421.4 257 75.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 7.1e-116 421.0 250 74.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 9.3e-116 420.6 258 73.6
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.6e-115 419.9 250 76.0
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.1e-115 419.5 244 76.2
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.1e-115 419.5 250 74.4
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.7e-115 419.1 221 83.7
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 4.6e-115 418.3 243 77.8
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.0e-115 417.9 241 77.6
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 6.0e-115 417.9 241 77.6
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 6.0e-115 417.9 239 76.6
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.3e-114 416.8 227 80.6
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.3e-114 416.8 241 77.6
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.8e-114 416.4 232 77.2
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 3.9e-114 415.2 244 76.6
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 5.1e-114 414.8 241 75.1
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 5.1e-114 414.8 251 74.5
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-113 413.7 252 74.2
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.5e-113 413.3 252 74.6
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.9e-113 412.9 249 74.7
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.3e-113 412.1 234 80.3
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.6e-113 410.6 255 71.4
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.6e-112 409.8 252 73.4
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 2.1e-112 409.5 239 75.3
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.1e-112 409.5 235 76.6
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 6.3e-112 407.9 251 73.7
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.4e-111 406.8 223 78.9
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 1.5e-110 403.3 268 67.5
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.6e-110 402.5 239 75.7
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 4.5e-110 401.7 262 71.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.2e-107 393.7 268 68.7
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.6e-107 392.1 243 72.0
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.1e-105 387.1 235 74.0
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.1e-103 380.6 209 83.3
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.8e-103 379.8 251 69.3
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.1e-95 354.0 222 69.8
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.4e-95 353.6 239 66.9
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 9.1e-95 350.9 224 67.9
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.5e-94 350.1 233 67.4
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 4.5e-94 348.6 240 63.3
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 2.9e-93 345.9 242 66.1
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 2.9e-93 345.9 227 69.2
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 9.4e-92 340.9 278 61.9
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 4.1e-87 325.5 254 61.4
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 5.9e-86 321.6 182 81.9
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.5e-81 307.0 156 86.5
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.4e-79 300.4 156 84.0
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 7.8e-62 241.5 179 59.2
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.6e-54 217.2 218 49.5
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.6e-54 215.7 232 46.6
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.7e-48 197.2 216 50.5
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 6.4e-40 168.7 96 79.2
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 2.9e-32 143.3 107 65.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 4.3e-28 129.4 116 56.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 9.6e-28 128.3 161 47.2
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 1.3e-13 81.3 51 60.8
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 2.8e-11 73.6 66 57.6


User provided reference genes

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