Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 1.7e-42 175.6 92 100.0
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 1.6e-19 99.4 76 71.1
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 2.7e-19 98.6 76 71.1
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 4.5e-19 97.8 77 68.8
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 5.9e-19 97.4 74 67.6
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 7.7e-19 97.1 76 65.8
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 7.7e-19 97.1 76 65.8
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 7.7e-19 97.1 76 65.8
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 1.0e-18 96.7 77 67.5
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 2.2e-18 95.5 74 67.6
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 2.9e-18 95.1 76 64.5
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 2.9e-18 95.1 74 66.2
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 3.8e-18 94.7 74 67.6
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 3.8e-18 94.7 77 63.6
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 5.0e-18 94.4 76 64.5
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 5.0e-18 94.4 75 65.3
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 5.0e-18 94.4 76 61.8
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 5.0e-18 94.4 75 65.3
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 6.5e-18 94.0 75 64.0
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 6.5e-18 94.0 75 64.0
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 6.5e-18 94.0 75 65.3
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 6.5e-18 94.0 75 62.7
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 6.5e-18 94.0 73 68.5
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 8.5e-18 93.6 72 68.1
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 1.5e-17 92.8 74 67.6
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 1.5e-17 92.8 75 64.0
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 1.5e-17 92.8 74 66.2
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.5e-17 92.8 74 67.6
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.5e-17 92.8 74 67.6
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 1.9e-17 92.4 74 66.2
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 2.5e-17 92.0 74 63.5
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 2.5e-17 92.0 74 67.6
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 2.5e-17 92.0 74 67.6
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 2.5e-17 92.0 74 66.2
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 2.5e-17 92.0 75 65.3
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 2.5e-17 92.0 74 66.2
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 2.5e-17 92.0 75 65.3
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 2.5e-17 92.0 75 65.3
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 2.5e-17 92.0 74 66.2
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 3.2e-17 91.7 76 67.1
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 3.2e-17 91.7 74 66.2
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 3.2e-17 91.7 76 63.2
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 4.2e-17 91.3 75 64.0
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 5.5e-17 90.9 75 65.3
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 5.5e-17 90.9 75 65.3
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 5.5e-17 90.9 73 65.8
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 5.5e-17 90.9 76 64.5
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 5.5e-17 90.9 74 66.2
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 5.5e-17 90.9 73 67.1
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 7.2e-17 90.5 76 63.2
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 1.2e-16 89.7 75 64.0
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 1.2e-16 89.7 77 67.5
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 1.6e-16 89.4 77 62.3
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.6e-16 89.4 75 61.3
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 1.6e-16 89.4 77 61.0
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 2.1e-16 89.0 74 63.5
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 2.1e-16 89.0 77 61.0
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 2.1e-16 89.0 76 59.2
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 2.1e-16 89.0 77 61.0
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 2.8e-16 88.6 74 64.9
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 2.8e-16 88.6 77 59.7
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 2.8e-16 88.6 78 61.5
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 3.6e-16 88.2 77 61.0
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 4.7e-16 87.8 77 58.4
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 6.1e-16 87.4 78 62.8
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 6.1e-16 87.4 71 62.0
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 8.0e-16 87.0 76 60.5
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 8.0e-16 87.0 74 60.8
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 8.0e-16 87.0 77 59.7
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 1.8e-15 85.9 77 59.7
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 1.8e-15 85.9 77 59.7
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 2.3e-15 85.5 73 63.0
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 3.0e-15 85.1 74 60.8
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 4.0e-15 84.7 74 58.1
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 6.8e-15 84.0 73 61.6
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 1.2e-14 83.2 77 58.4
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 1.5e-14 82.8 76 64.5
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 2.0e-14 82.4 75 58.7
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 2.0e-14 82.4 75 58.7
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 2.0e-14 82.4 75 58.7
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 2.0e-14 82.4 75 58.7
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 2.0e-14 82.4 75 58.7
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 2.0e-14 82.4 75 58.7
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 2.0e-14 82.4 59 71.2
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 4.4e-14 81.3 54 81.5
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 9.8e-14 80.1 74 58.1
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 9.8e-14 80.1 59 69.5
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 2.2e-13 79.0 56 71.4
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 2.2e-13 79.0 63 66.7
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 8.3e-13 77.0 75 61.3
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 8.3e-13 77.0 75 61.3
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 8.3e-13 77.0 58 67.2
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 8.3e-13 77.0 58 67.2
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 1.1e-12 76.6 55 72.7
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 4.1e-12 74.7 74 56.8
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 5.4e-12 74.3 58 65.5
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 7.0e-12 73.9 55 67.3
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 7.0e-12 73.9 55 67.3
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 1.2e-11 73.2 55 67.3
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 1.2e-11 73.2 58 63.8
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 1.6e-11 72.8 74 55.4
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 2.0e-11 72.4 55 65.5
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 2.7e-11 72.0 58 63.8
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 4.5e-11 71.2 56 62.5
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 5.9e-11 70.9 55 65.5
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 7.8e-11 70.5 62 54.8
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 1.0e-10 70.1 58 56.9
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 1.7e-10 69.3 55 69.1
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 2.9e-10 68.6 67 53.7
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 5.0e-10 67.8 55 67.3
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 7.3e-09 63.9 69 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 6.1e-08 60.8 58 53.4
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 6.1e-08 60.8 92 41.3
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 1.0e-07 60.1 53 54.7
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 3.0e-07 58.5 51 58.8
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 8.9e-07 57.0 40 70.0
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 2.0e-06 55.8 58 50.0


User provided reference genes

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