Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C618G3 Lonicera japonica HOM05D032121 ORTHO05D026536 2.7e-67 258.5 122 100.0
Lj2C813T1 Lonicera japonica HOM05D032121 ORTHO05D026536 4.3e-33 144.8 93 69.9
Lj2A820T4 Lonicera japonica HOM05D032121 ORTHO05D026536 1.9e-12 76.3 53 67.9
AUR62025365 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.1e-11 72.8 89 40.4
QL10p010330 Quercus lobata HOM05D000003 ORTHO05D000126 1.0e-10 70.5 83 41.0
AUR62003754 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.5e-09 66.6 91 36.3
CANSAT80G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-09 65.9 90 36.7
AUR62034310 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.3e-09 65.5 92 38.0
AUR62010906 Chenopodium quinoa HOM05D000003 ORTHO05D000006 7.4e-09 64.3 92 38.0
QL11p029467 Quercus lobata HOM05D000003 ORTHO05D000006 9.6e-09 63.9 74 40.5
AUR62020982 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.3e-08 63.5 92 39.1
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 1.3e-08 63.5 85 42.4
AUR62022213 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.6e-08 63.2 92 35.9
AUR62005445 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.7e-08 62.0 103 35.0
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 3.7e-08 62.0 74 36.5
TPR.G29120 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-08 62.0 84 33.3
AUR62028154 Chenopodium quinoa HOM05D000003 ORTHO05D000006 4.8e-08 61.6 73 38.4
QL10p024010 Quercus lobata HOM05D000003 ORTHO05D000004 4.8e-08 61.6 83 38.6
AUR62027630 Chenopodium quinoa HOM05D000003 ORTHO05D000006 6.2e-08 61.2 72 38.9
AUR62040533 Chenopodium quinoa HOM05D000102 ORTHO05D000006 6.2e-08 61.2 73 37.0
TPR.G26705 Trifolium pratense HOM05D001177 ORTHO05D001507 6.2e-08 61.2 84 33.3
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-08 60.8 84 34.5
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 8.1e-08 60.8 93 35.5
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 8.1e-08 60.8 95 35.8
AUR62033092 Chenopodium quinoa HOM05D000003 ORTHO05D000006 8.1e-08 60.8 72 40.3
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 8.1e-08 60.8 107 31.8
QL08p018396 Quercus lobata HOM05D000003 ORTHO05D000126 8.1e-08 60.8 76 39.5
EL10Ac5g11644 Beta vulgaris HOM05D000003 ORTHO05D000006 1.1e-07 60.5 89 34.8
QL06p009545 Quercus lobata HOM05D000003 ORTHO05D000006 1.1e-07 60.5 78 39.7
Ah.10g031070 Amaranthus hybridus HOM05D000003 ORTHO05D000006 1.8e-07 59.7 82 37.8
Lju1220C4T4 Lonicera japonica HOM05D000003 ORTHO05D000006 1.8e-07 59.7 75 40.0
QL04p091229 Quercus lobata HOM05D000003 ORTHO05D000006 1.8e-07 59.7 74 37.8
QL93p0194_0003 Quercus lobata HOM05D000003 ORTHO05D000006 1.8e-07 59.7 71 39.4
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-07 58.9 84 33.3
AUR62016914 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.1e-07 58.9 76 35.5
PSO170G0277 Papaver somniferum HOM05D000003 ORTHO05D000006 5.3e-07 58.2 90 33.3
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 5.3e-07 58.2 78 37.2
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 5.3e-07 58.2 77 39.0
CANSAT11G0839 Cannabis sativa HOM05D000003 ORTHO05D000006 6.9e-07 57.8 92 39.1
AUR62040027 Chenopodium quinoa HOM05D000003 ORTHO05D000006 6.9e-07 57.8 71 39.4
Atru.chr2.1764 Acer truncatum HOM05D000003 ORTHO05D000006 9.0e-07 57.4 84 34.5
TWI80G0001 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 9.0e-07 57.4 87 35.6
Ah.12g063590 Amaranthus hybridus HOM05D000003 ORTHO05D026536 1.2e-06 57.0 80 36.2
EL10Ac2g03044 Beta vulgaris HOM05D000003 ORTHO05D000006 1.2e-06 57.0 83 37.3
AUR62031375 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.2e-06 57.0 74 35.1
Duzib138G1801 Durio zibethinus HOM05D000003 ORTHO05D000006 1.2e-06 57.0 74 33.8
Atru.chr8.264 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 94 33.0
EL10Ac2g04745 Beta vulgaris HOM05D000003 ORTHO05D000006 1.5e-06 56.6 90 34.4
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 1.5e-06 56.6 74 40.5
EL10Ac7g16739 Beta vulgaris HOM05D000052 ORTHO05D000006 2.0e-06 56.2 84 36.9
QL04p035275 Quercus lobata HOM05D000003 ORTHO05D000006 2.0e-06 56.2 79 38.0
EL10As2g23263 Beta vulgaris HOM05D000003 ORTHO05D000006 2.6e-06 55.8 88 36.4
LjContig00081g0010359 Lotus japonicus HOM05D000003 ORTHO05D000006 2.6e-06 55.8 85 31.8
Rhsim01G0139300 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.6e-06 55.8 97 35.1
TPR.G851 Trifolium pratense HOM05D000003 ORTHO05D000004 2.6e-06 55.8 92 32.6
TAR090G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000006 2.6e-06 55.8 84 35.7
Medtr3g436680 Medicago truncatula HOM05D005324 ORTHO05D001185 3.4e-06 55.5 96 29.2
CiPaw.11G064200 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.5e-06 55.1 85 35.3
Rhsim06G0102000 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.5e-06 55.1 78 42.3
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-06 54.7 93 29.0
AUR62004908 Chenopodium quinoa HOM05D000003 ORTHO05D000006 5.8e-06 54.7 72 34.7
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.8e-06 54.7 97 35.1
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 7.6e-06 54.3 82 37.8
FvH4_2g01463 Fragaria vesca HOM05D000003 ORTHO05D000006 7.6e-06 54.3 74 36.5
QL07p021558 Quercus lobata HOM05D000003 ORTHO05D000006 7.6e-06 54.3 86 34.9
RhsimUnG0247100 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.6e-06 54.3 78 39.7
Atru.chr7.1973 Acer truncatum HOM05D000003 ORTHO05D000006 1.0e-05 53.9 83 36.1
Aqoxy3G01336 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.0e-05 53.9 74 35.1
CANSAT11G1797 Cannabis sativa HOM05D000003 ORTHO05D000006 1.0e-05 53.9 89 33.7
CANSAT35G0389 Cannabis sativa HOM05D000003 ORTHO05D000006 1.0e-05 53.9 76 34.2
PSO675G2581 Papaver somniferum HOM05D000003 ORTHO05D000006 1.0e-05 53.9 79 39.2
QL05p011573 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-05 53.9 79 34.2
QL07p019949 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-05 53.9 77 35.1
QL12p021682 Quercus lobata HOM05D000003 ORTHO05D000006 1.0e-05 53.9 76 36.8


User provided reference genes

Program Settings