Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C615T3 Lonicera japonica HOM05D003811 ORTHO05D004470 1.2e-195 686.4 369 100.0
Lj5C612T1 Lonicera japonica HOM05D003811 ORTHO05D004470 4.9e-173 611.3 369 90.2
DCAR_018030 Daucus carota HOM05D003811 ORTHO05D004470 5.2e-90 335.5 372 56.2
Nitab4.5_0000949g0010 Nicotiana tabacum HOM05D003811 ORTHO05D004470 3.8e-85 319.3 372 53.5
Dinv25445 Davidia involucrata HOM05D003811 ORTHO05D004470 5.5e-84 315.5 364 56.0
Nitab4.5_0000491g0080 Nicotiana tabacum HOM05D003811 ORTHO05D004470 9.5e-84 314.7 374 51.9
Peaxi162Scf01038g00011 Petunia axillaris HOM05D003811 ORTHO05D004470 2.8e-83 313.2 375 51.7
CSS0000053 Camellia sinensis var. sinensis HOM05D003811 ORTHO05D004470 4.7e-83 312.4 370 53.5
Cfa013454 Carpinus fangiana HOM05D003811 ORTHO05D004470 3.0e-82 309.7 373 55.2
Nitab4.5_0000949g0020 Nicotiana tabacum HOM05D003811 ORTHO05D004470 5.7e-81 305.4 376 51.6
CAN.G192.5 Capsicum annuum HOM05D003811 ORTHO05D004470 2.8e-80 303.1 379 51.2
TAR620G0001 Trochodendron aralioides HOM05D003811 ORTHO05D004470 4.1e-79 299.3 362 51.7
vmacro05996 Vaccinium macrocarpon HOM05D003811 ORTHO05D004470 2.0e-78 297.0 376 53.2
PGSC0003DMG400022983 Solanum tuberosum HOM05D003811 ORTHO05D004470 1.0e-77 294.7 381 52.0
Rhsim03G0266200 Rhododendron simsii HOM05D003811 ORTHO05D004470 2.3e-77 293.5 378 52.4
GSVIVG01010855001 Vitis vinifera HOM05D003811 ORTHO05D004470 2.3e-77 293.5 358 52.5
CiPaw.07G197300 Carya illinoinensis HOM05D003811 ORTHO05D004470 3.9e-77 292.7 365 53.4
Cc06_g20840 Coffea canephora HOM05D003811 ORTHO05D004470 5.0e-77 292.4 394 49.5
Oeu006847.1 Olea europaea HOM05D003811 ORTHO05D004470 5.0e-77 292.4 373 50.7
Lsat_1_v5_gn_7_56240 Lactuca sativa HOM05D003811 ORTHO05D004470 1.5e-76 290.8 382 51.3
Oeu018819.1 Olea europaea HOM05D003811 ORTHO05D004470 1.5e-76 290.8 372 50.5
Sopen07g004460 Solanum pennellii HOM05D003811 ORTHO05D004470 3.3e-76 289.7 380 49.7
FAN22G1182 Fragaria x ananassa HOM05D003811 ORTHO05D004470 7.3e-76 288.5 373 50.9
Oeu019552.1 Olea europaea HOM05D003811 ORTHO05D004470 1.0e-74 284.6 379 48.8
Solyc07g008540.3 Solanum lycopersicum HOM05D003811 ORTHO05D004470 1.4e-74 284.3 381 49.6
FvH4_4g07270 Fragaria vesca HOM05D003811 ORTHO05D004470 3.1e-74 283.1 373 50.1
MD13G1239300 Malus domestica HOM05D003811 ORTHO05D004470 5.2e-74 282.3 376 50.0
FAN17G0360 Fragaria x ananassa HOM05D003811 ORTHO05D004470 8.9e-74 281.6 376 50.3
Cpa.g.sc95.8 Carica papaya HOM05D003811 ORTHO05D004470 1.3e-72 277.7 383 48.0
DCAR_014667 Daucus carota HOM05D003811 ORTHO05D004470 1.7e-72 277.3 382 50.8
Duzib168G0111 Durio zibethinus HOM05D003811 ORTHO05D004470 1.7e-72 277.3 372 48.7
Manes.06G019300 Manihot esculenta HOM05D003811 ORTHO05D004470 2.2e-72 276.9 378 49.2
Thecc.09G186300 Theobroma cacao HOM05D003811 ORTHO05D004470 2.2e-72 276.9 381 49.6
Sabra18G0116100 Salix brachista HOM05D003811 ORTHO05D004470 6.4e-72 275.4 399 47.9
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.4e-71 274.2 373 48.8
Migut.L01879 Erythranthe guttata HOM05D003811 ORTHO05D004470 1.9e-71 273.9 355 50.4
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla HOM05D003811 ORTHO05D004470 4.1e-71 272.7 358 48.3
Ciclev10008308m.g Citrus clementina HOM05D003811 ORTHO05D004470 1.0e-69 268.1 395 46.6
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.0e-69 268.1 373 48.3
Rhsim01G0116800 Rhododendron simsii HOM05D003811 ORTHO05D004470 1.3e-69 267.7 370 49.2
RcHm_v2.0_Chr4g0399481 Rosa chinensis HOM05D003811 ORTHO05D004470 3.9e-69 266.2 367 48.0
Oeu034800.1 Olea europaea HOM05D003811 ORTHO05D004470 5.0e-69 265.8 371 47.2
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 6.6e-69 265.4 363 49.0
Aqoxy7G02811 Aquilegia oxysepala HOM05D003811 ORTHO05D004470 1.9e-68 263.8 372 48.9
Migut.J00797 Erythranthe guttata HOM05D003811 ORTHO05D004470 8.0e-67 258.5 377 49.1
ClCG11G011760 Citrullus lanatus HOM05D003811 ORTHO05D004470 1.8e-66 257.3 377 47.7
Potri.018G142100 Populus trichocarpa HOM05D003811 ORTHO05D004470 6.8e-66 255.4 415 44.1
Duzib150G1212 Durio zibethinus HOM05D003811 ORTHO05D004470 1.5e-65 254.2 366 45.9
HanXRQChr03g0065501 Helianthus annuus HOM05D003811 ORTHO05D004470 1.5e-65 254.2 441 43.3
MD16G1248400 Malus domestica HOM05D003811 ORTHO05D004470 2.9e-64 250.0 376 44.4
Potri.006G075200 Populus trichocarpa HOM05D003811 ORTHO05D004470 3.7e-64 249.6 403 44.2
MBI13_g34046_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 4.9e-64 249.2 354 47.7
Dinv41179 Davidia involucrata HOM05D003811 ORTHO05D004470 8.3e-64 248.4 361 46.8
ECA240G2391 Erigeron canadensis HOM05D003811 ORTHO05D004470 3.2e-63 246.5 382 46.3
FAN02G0923 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.4e-63 245.7 372 44.4
TWI63G0214 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 5.4e-63 245.7 352 46.0
Sc10g0001710 Simmondsia chinensis HOM05D003811 ORTHO05D004470 7.1e-63 245.4 377 46.7
HanXRQChr09g0245431 Helianthus annuus HOM05D003811 ORTHO05D004470 9.2e-63 245.0 417 42.0
Sabra06G0055900 Salix brachista HOM05D003811 ORTHO05D004470 9.2e-63 245.0 391 44.5
Hund13780 Selenicereus undatus HOM05D003811 ORTHO05D004470 9.2e-63 245.0 391 46.0
MELO3C003975.2 Cucumis melo HOM05D003811 ORTHO05D004470 1.2e-62 244.6 385 46.2
CsaV3_2G008720 Cucumis sativus L. HOM05D003811 ORTHO05D004470 2.1e-62 243.8 382 46.6
Sed0004951 Sechium edule HOM05D003811 ORTHO05D004470 7.8e-62 241.9 372 48.4
Nn8g40778 Nelumbo nucifera HOM05D003811 ORTHO05D004470 1.0e-61 241.5 362 45.6
Manes.14G159300 Manihot esculenta HOM05D003811 ORTHO05D004470 3.0e-61 240.0 373 45.0
Eucgr.C00112 Eucalyptus grandis HOM05D003811 ORTHO05D004470 3.9e-61 239.6 367 44.1
Ah.10g036890 Amaranthus hybridus HOM05D003811 ORTHO05D004470 5.1e-61 239.2 395 45.1
Atru.chr7.754 Acer truncatum HOM05D003811 ORTHO05D004470 8.6e-61 238.4 358 44.4
Atru.chr7.775 Acer truncatum HOM05D003811 ORTHO05D004470 8.6e-61 238.4 358 44.4
MSTRG.26548 Avicennia marina HOM05D003811 ORTHO05D004470 5.6e-60 235.7 369 43.6
MSTRG.10438 Avicennia marina HOM05D003811 ORTHO05D004470 1.6e-59 234.2 374 46.0
Sed0025374 Sechium edule HOM05D003811 ORTHO05D004470 1.6e-59 234.2 366 45.4
FvH4_6g24780 Fragaria vesca HOM05D003811 ORTHO05D004470 8.1e-59 231.9 377 44.8
MBI16_g05834_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 6.8e-58 228.8 360 44.2
EL10Ac2g04726 Beta vulgaris HOM05D003811 ORTHO05D004470 1.7e-56 224.2 395 44.8
Lsat_1_v5_gn_5_83141 Lactuca sativa HOM05D003811 ORTHO05D004470 3.7e-56 223.0 358 44.7
Prupe.1G074900 Prunus persica HOM05D003811 ORTHO05D004470 2.4e-55 220.3 375 45.1
Lsat_1_v5_gn_8_69001 Lactuca sativa HOM05D003811 ORTHO05D004470 3.2e-55 219.9 362 45.0
TWI34G1601 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 9.2e-55 218.4 360 41.9
HanXRQChr10g0308851 Helianthus annuus HOM05D003811 ORTHO05D004470 1.2e-54 218.0 355 44.5
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 7.8e-54 215.3 393 42.2
Ca_27932_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 7.8e-54 215.3 374 40.6
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea HOM05D003811 ORTHO05D004470 5.1e-53 212.6 382 41.9
Glyma.13G100700 Glycine max HOM05D003811 ORTHO05D004470 1.1e-52 211.5 362 42.5
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea HOM05D003811 ORTHO05D004470 1.9e-52 210.7 382 41.4
Hund16072 Selenicereus undatus HOM05D003811 ORTHO05D004470 3.3e-52 209.9 407 42.5
Medtr4g127420 Medicago truncatula HOM05D003811 ORTHO05D004470 5.6e-52 209.1 369 43.1
Psat4g013600 Pisum sativum HOM05D003811 ORTHO05D004470 9.6e-52 208.4 388 42.0
Lj4g0014027 Lotus japonicus HOM05D003811 ORTHO05D004470 2.8e-51 206.8 362 43.1
Glyma.17G059100 Glycine max HOM05D003811 ORTHO05D004470 8.1e-51 205.3 363 42.4
QL02p046940 Quercus lobata HOM05D003811 ORTHO05D004470 1.8e-50 204.1 387 42.4
VMungo1215G0314 Vigna mungo HOM05D003811 ORTHO05D004470 3.4e-49 199.9 352 43.8
CDE06G2566 Ceratophyllum demersum HOM05D003811 ORTHO05D004470 6.4e-48 195.7 347 40.6
SalBow5G0957 Salvia bowleyana HOM05D003811 ORTHO05D004470 8.4e-48 195.3 363 39.9
SalBow5G4432 Salvia bowleyana HOM05D003811 ORTHO05D004470 4.2e-47 193.0 363 40.8
Thhalv10013517m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 3.0e-45 186.8 385 38.7
Aa31LG3G13080 Aethionema arabicum HOM05D003811 ORTHO05D004470 3.9e-45 186.4 406 37.7
Lalb_Chr07g0180651 Lupinus albus HOM05D003811 ORTHO05D004470 3.9e-45 186.4 349 41.5
Eucgr.C02219 Eucalyptus grandis HOM05D003811 ORTHO05D004470 8.7e-45 185.3 364 39.3
Actinidia38496 Actinidia chinensis HOM05D003811 ORTHO05D004470 3.3e-44 183.3 211 52.1
AUR62012114 Chenopodium quinoa HOM05D003811 ORTHO05D004470 3.3e-44 183.3 385 40.3
TPR.G32975 Trifolium pratense HOM05D003811 ORTHO05D004470 5.6e-44 182.6 375 40.8
AUR62040721 Chenopodium quinoa HOM05D003811 ORTHO05D004470 7.3e-44 182.2 385 39.2
Lalb_Chr13g0299991 Lupinus albus HOM05D003811 ORTHO05D004470 2.8e-43 180.3 350 41.4
Sp6g18910 Schrenkiella parvula HOM05D003811 ORTHO05D004470 2.8e-43 180.3 398 38.2
Phvul.003G141200 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 4.8e-43 179.5 351 41.0
CiPaw.08G032400 Carya illinoinensis HOM05D003811 ORTHO05D004470 1.8e-42 177.6 357 39.5
Lalb_Chr12g0199621 Lupinus albus HOM05D003811 ORTHO05D004470 5.3e-42 176.0 363 40.5
Thhalv10025322m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 9.0e-42 175.3 393 37.4
PSO170G1122 Papaver somniferum HOM05D003811 ORTHO05D004470 2.6e-41 173.7 377 38.5
Gohir.A05G002200 Gossypium hirsutum HOM05D003811 ORTHO05D004470 2.2e-40 170.6 343 39.1
COL.COLO4_07099 Corchorus olitorius HOM05D003811 ORTHO05D004470 3.8e-40 169.9 382 36.9
PSO063G0992 Papaver somniferum HOM05D003811 ORTHO05D004470 8.4e-40 168.7 379 37.5
Gohir.D05G002600 Gossypium hirsutum HOM05D003811 ORTHO05D004470 3.2e-39 166.8 343 38.8
HanXRQChr05g0141071 Helianthus annuus HOM05D003811 ORTHO05D004470 5.4e-39 166.0 368 37.0
unitig_8.g4051 Utricularia gibba HOM05D003811 ORTHO05D004470 5.4e-39 166.0 324 40.7
SGA_v2.0_scaffold31G12764 Striga asiatica HOM05D003811 ORTHO05D004470 2.1e-38 164.1 376 39.9
CARHR233500 Cardamine hirsuta HOM05D003811 ORTHO05D004470 2.7e-38 163.7 357 36.7
C01p21610 Brassica napus HOM05D003811 ORTHO05D004470 4.6e-38 162.9 378 36.8
BolC1t02080H Brassica oleracea HOM05D003811 ORTHO05D004470 4.6e-38 162.9 378 36.8
BcaC09g50723 Brassica carinata HOM05D003811 ORTHO05D004470 5.1e-37 159.5 378 36.5
Gorai.009G002400 Gossypium raimondii HOM05D003811 ORTHO05D004470 6.6e-37 159.1 342 37.7
AL7G27010 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 2.5e-36 157.1 372 36.3
AT4G25990 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 4.3e-36 156.4 370 36.2
PGR001G0001 Punica granatum HOM05D003811 ORTHO05D004470 6.2e-35 152.5 380 36.3
AT5G57180 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 8.1e-35 152.1 393 33.3
unitig_22.g5159 Utricularia gibba HOM05D003811 ORTHO05D004470 8.1e-35 152.1 290 41.4
ECA234G4485 Erigeron canadensis HOM05D003811 ORTHO05D004470 1.4e-34 151.4 195 49.2
BcaB05g22326 Brassica carinata HOM05D003811 ORTHO05D004470 1.8e-34 151.0 379 35.4
BolC9t57752H Brassica oleracea HOM05D003811 ORTHO05D004470 1.8e-34 151.0 334 38.3
BraA02t05937Z Brassica rapa HOM05D003811 ORTHO05D004470 1.8e-34 151.0 360 36.7
AL8G33110 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 3.1e-34 150.2 398 33.7
A02p08670 Brassica napus HOM05D003811 ORTHO05D004470 3.1e-34 150.2 364 37.4
C09p49010 Brassica napus HOM05D003811 ORTHO05D004470 4.0e-34 149.8 331 36.9
Carub.0007s1496 Capsella rubella HOM05D003811 ORTHO05D004470 1.2e-33 148.3 379 35.4
CARHR270970 Cardamine hirsuta HOM05D003811 ORTHO05D004470 1.5e-33 147.9 401 32.9
BcaC04g19992 Brassica carinata HOM05D003811 ORTHO05D004470 2.0e-33 147.5 331 36.6
Sp7g24010 Schrenkiella parvula HOM05D003811 ORTHO05D004470 2.0e-33 147.5 380 35.3
BraA01t01681Z Brassica rapa HOM05D003811 ORTHO05D004470 4.9e-32 142.9 378 33.1
A01p17250 Brassica napus HOM05D003811 ORTHO05D004470 6.4e-32 142.5 378 34.1
BcaC06g32778 Brassica carinata HOM05D003811 ORTHO05D004470 1.1e-31 141.7 366 35.5
BraA03t14705Z Brassica rapa HOM05D003811 ORTHO05D004470 1.4e-31 141.4 373 35.1
SGA_v2.0_scaffold511G52626 Striga asiatica HOM05D003811 ORTHO05D004470 3.2e-31 140.2 355 34.1
BolC7t45947H Brassica oleracea HOM05D003811 ORTHO05D004470 9.3e-31 138.7 387 32.6
BcaB08g36076 Brassica carinata HOM05D003811 ORTHO05D004470 1.2e-30 138.3 346 33.5
BcaC03g14176 Brassica carinata HOM05D003811 ORTHO05D004470 1.6e-30 137.9 363 34.4
C02p14510 Brassica napus HOM05D003811 ORTHO05D004470 1.6e-30 137.9 363 34.4
BolC2t07575H Brassica oleracea HOM05D003811 ORTHO05D004470 1.6e-30 137.9 363 34.4
A10p14570 Brassica napus HOM05D003811 ORTHO05D004470 3.5e-30 136.7 330 33.9
BraA10t43544Z Brassica rapa HOM05D003811 ORTHO05D004470 4.6e-30 136.3 329 34.7
Actinidia29953 Actinidia chinensis HOM05D003811 ORTHO05D004470 6.0e-30 136.0 147 52.4
SGA_v2.0_scaffold112G31580 Striga asiatica HOM05D003811 ORTHO05D004470 3.0e-29 133.7 278 41.7
C07p54590 Brassica napus HOM05D003811 ORTHO05D004470 1.9e-28 131.0 381 32.3
ECA236G3708 Erigeron canadensis HOM05D003811 ORTHO05D004470 9.6e-28 128.6 284 36.6
BcaNung03775 Brassica carinata HOM05D003811 ORTHO05D004470 1.3e-27 128.3 367 33.8
Glyma.09G059800 Glycine max HOM05D003811 ORTHO05D004470 2.4e-26 124.0 377 35.5
HPP92_017127 Vanilla planifolia HOM05D003811 ORTHO05D004470 4.0e-26 123.2 359 35.1
Carub.0008s1769 Capsella rubella HOM05D003811 ORTHO05D004470 2.6e-25 120.6 385 33.2
FAN05G4809 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.4e-25 120.2 205 40.0
Glyma.15G166500 Glycine max HOM05D003811 ORTHO05D004470 4.5e-25 119.8 339 36.9
Oeu064847.1 Olea europaea HOM05D003811 ORTHO05D004470 4.5e-25 119.8 111 63.1
Psat1g144040 Pisum sativum HOM05D003811 ORTHO05D004470 2.9e-24 117.1 352 36.1
HPP92_010287 Vanilla planifolia HOM05D003811 ORTHO05D004470 1.1e-23 115.2 362 33.4
A03p56350 Brassica napus HOM05D003811 ORTHO05D004470 5.5e-23 112.8 368 31.0
Medtr2g038010 Medicago truncatula HOM05D003811 ORTHO05D004470 6.7e-21 105.9 371 33.4
ATR0626G357 Amborella trichopoda HOM05D003811 ORTHO05D004470 8.7e-21 105.5 376 31.4
Ca_02108_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 1.5e-20 104.8 355 36.9
Phvul.009G236100 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 3.3e-20 103.6 310 31.9
FAN05G5342 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.4e-18 98.2 92 62.0
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 1.3e-16 91.7 346 32.1
Lsat_1_v5_gn_6_95500 Lactuca sativa HOM05D003811 ORTHO05D004470 1.9e-15 87.8 138 44.2
FAN24G1311 Fragaria x ananassa HOM05D003811 ORTHO05D004470 7.9e-14 82.4 102 46.1
Zm00001eb226810 Zea mays HOM05D018649 ORTHO05D004470 1.8e-13 81.3 356 28.4
FvH4_2g01490 Fragaria vesca HOM05D003811 ORTHO05D004470 3.0e-13 80.5 102 45.1
Os02g0148000 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 6.7e-13 79.3 279 31.2
Os06g0699600 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 4.3e-12 76.6 360 27.2
Zm00001eb272980 Zea mays HOM05D018649 ORTHO05D004470 1.3e-11 75.1 382 29.3
Lsat_1_v5_gn_5_45681 Lactuca sativa HOM05D003811 ORTHO05D036460 1.0e-08 65.5 65 47.7
Lsat_1_v5_gn_5_27801 Lactuca sativa HOM05D003811 ORTHO05D036460 2.2e-08 64.3 67 46.3
Zm00001eb208040 Zea mays HOM05D003811 ORTHO05D004470 1.4e-07 61.6 405 25.2
Lsat_1_v5_gn_9_75161 Lactuca sativa HOM05D003811 ORTHO05D036460 1.2e-06 58.5 65 44.6


User provided reference genes

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