Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.3e-174 616.3 312 100.0
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.2e-173 611.7 312 98.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.6e-164 581.3 316 94.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 6.3e-81 305.1 180 84.4
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 7.0e-80 301.6 180 82.2
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.3e-78 297.4 180 82.2
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 8.6e-78 294.7 176 82.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.5e-77 293.9 208 69.2
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.2e-76 290.8 204 71.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 8.9e-75 284.6 184 75.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.5e-74 283.9 181 75.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.4e-74 282.7 180 77.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.8e-74 281.2 180 77.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.8e-74 281.2 176 77.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 9.8e-74 281.2 179 76.0
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.3e-73 280.8 174 78.7
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.9e-73 279.6 178 77.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.7e-73 279.3 179 73.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.4e-73 278.5 179 73.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.7e-71 273.1 178 71.9
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.7e-71 273.1 178 71.9
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.5e-71 272.7 181 73.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 5.9e-71 271.9 181 74.0
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 5.9e-71 271.9 181 74.0
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 5.9e-71 271.9 181 74.0
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.9e-71 271.9 178 71.9
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.0e-70 271.2 181 72.4
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.3e-70 270.8 184 72.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.7e-70 270.4 180 73.9
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.0e-70 269.6 184 71.2
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.0e-70 269.6 180 73.3
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.9e-70 269.2 181 71.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.9e-70 269.2 184 66.8
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 5.0e-70 268.9 181 71.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.6e-70 268.5 178 74.2
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.6e-70 268.1 180 72.2
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.5e-69 267.3 181 71.3
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.5e-69 267.3 177 70.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.9e-69 266.9 176 73.3
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 3.3e-69 266.2 180 72.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.3e-69 266.2 180 72.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.3e-69 265.8 180 71.7
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 5.6e-69 265.4 176 73.3
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 5.6e-69 265.4 184 67.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.1e-68 263.5 181 70.7
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.1e-68 263.5 184 70.7
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.8e-68 263.1 210 64.3
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.6e-68 262.7 178 71.3
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.6e-68 262.7 184 70.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 3.6e-68 262.7 181 68.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.7e-68 262.3 162 79.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 6.2e-68 261.9 186 70.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 6.2e-68 261.9 178 71.3
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.2e-68 261.9 178 70.8
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.0e-67 261.2 180 69.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.0e-67 261.2 180 69.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.4e-67 260.8 163 75.5
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.8e-67 260.4 178 70.8
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 2.3e-67 260.0 199 63.8
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 3.1e-67 259.6 178 71.3
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.1e-67 259.6 180 68.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.0e-67 259.2 176 69.9
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.0e-67 259.2 186 69.4
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.2e-67 258.8 181 70.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 5.2e-67 258.8 178 70.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 5.2e-67 258.8 176 72.7
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 5.2e-67 258.8 176 72.7
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 6.8e-67 258.5 181 69.6
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 8.9e-67 258.1 178 70.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 8.9e-67 258.1 178 70.8
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 8.9e-67 258.1 178 70.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 8.9e-67 258.1 178 70.8
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.2e-66 257.7 181 69.6
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.2e-66 257.7 181 69.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.5e-66 257.3 181 68.5
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.5e-66 257.3 178 69.7
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.0e-66 256.9 249 55.4
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.0e-66 256.9 180 68.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.6e-66 256.5 178 70.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.6e-66 256.5 169 75.7
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 5.8e-66 255.4 176 72.2
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 7.5e-66 255.0 178 70.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 9.8e-66 254.6 178 67.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 2.2e-65 253.4 178 70.2
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 4.9e-65 252.3 180 67.8
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.4e-65 251.9 178 68.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.4e-65 251.9 178 68.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 6.4e-65 251.9 178 69.7
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.4e-65 251.9 176 68.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.1e-64 251.1 178 69.7
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.1e-64 251.1 178 69.7
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-64 251.1 163 75.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.4e-64 250.8 180 67.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.9e-64 250.4 178 69.1
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.9e-64 250.4 180 66.1
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.9e-64 250.4 176 67.6
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.9e-64 250.4 176 67.6
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.4e-64 250.0 178 64.6
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.4e-64 250.0 178 66.9
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.4e-64 250.0 176 67.6
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.4e-64 250.0 178 67.4
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.4e-64 250.0 176 68.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.4e-64 250.0 180 66.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.4e-64 250.0 209 60.8
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.4e-64 250.0 180 67.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 3.2e-64 249.6 180 67.2
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 4.1e-64 249.2 176 68.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.4e-64 248.8 150 80.0
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 7.0e-64 248.4 179 65.9
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 9.2e-64 248.1 180 66.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.6e-63 247.3 177 68.9
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.0e-63 246.9 180 67.2
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.7e-63 246.5 173 69.4
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.5e-63 246.1 177 67.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 7.8e-63 245.0 180 65.6
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 7.8e-63 245.0 180 62.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.0e-62 244.6 178 65.2
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 3.0e-62 243.0 170 68.8
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.6e-62 241.9 147 79.6
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.5e-61 240.7 221 57.0
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 5.6e-61 238.8 175 66.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 9.5e-61 238.0 198 59.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.1e-59 234.6 170 66.5
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.4e-59 234.2 170 66.5
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 4.0e-59 232.6 180 60.6
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.8e-59 231.9 166 69.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.5e-58 230.7 192 58.9
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 4.4e-58 229.2 170 64.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 5.8e-58 228.8 187 61.5
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.3e-57 227.6 158 67.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.4e-56 223.4 169 61.5
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.2e-56 221.5 164 70.7
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 7.8e-55 218.4 161 65.2
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.0e-54 218.0 171 61.4
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.9e-54 216.1 181 58.6
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.1e-53 214.5 165 63.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.9e-53 213.8 159 66.0
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 4.7e-52 209.1 193 52.8
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 8.9e-51 204.9 165 63.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-50 204.1 132 72.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-47 193.7 126 75.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.6e-46 188.3 147 67.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.1e-40 171.4 112 71.4
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 6.9e-35 152.1 110 60.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.5e-34 151.0 168 45.8
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 4.5e-34 149.4 150 50.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.0e-30 138.3 169 42.6
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 4.3e-29 132.9 161 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 4.8e-28 129.4 168 39.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.4e-27 127.1 156 42.3
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.2e-24 116.3 74 71.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 6.2e-20 102.4 86 59.3
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.0e-17 95.1 150 38.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-15 88.2 87 47.1
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.0e-14 83.6 52 69.2
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.4e-08 64.7 61 47.5
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.5e-08 63.9 60 48.3
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.8e-06 57.8 62 43.5


User provided reference genes

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