Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C575G2 Lonicera japonica HOM05D000101 ORTHO05D003282 2.2e-137 492.3 242 100.0
Lj5C583T4 Lonicera japonica HOM05D000101 ORTHO05D003282 2.9e-118 428.7 273 80.2
Lj5C573T0 Lonicera japonica HOM05D000101 ORTHO05D003282 1.4e-115 419.9 273 78.8
Lj5C574T6 Lonicera japonica HOM05D000101 ORTHO05D003282 8.3e-113 410.6 273 76.9
Lj5A582T23 Lonicera japonica HOM05D000101 ORTHO05D003282 8.6e-110 400.6 273 75.5
Lj5C584T0 Lonicera japonica HOM05D000101 ORTHO05D003282 5.6e-109 397.9 273 75.5
Lj5C15T0 Lonicera japonica HOM05D000101 ORTHO05D003282 4.0e-107 391.7 273 73.6
Lj5P578T9 Lonicera japonica HOM05D000101 ORTHO05D003282 4.3e-101 371.7 237 78.5
Lj5C585G3 Lonicera japonica HOM05D000101 ORTHO05D003282 8.9e-99 364.0 272 70.2
Lj5C580T1 Lonicera japonica HOM05D000101 ORTHO05D003282 2.6e-98 362.5 272 70.2
Lj5C18T0 Lonicera japonica HOM05D000101 ORTHO05D003282 2.2e-97 359.4 272 69.5
Lj5P583T36 Lonicera japonica HOM05D000101 ORTHO05D003282 2.2e-97 359.4 237 75.9
Lj5C275T1 Lonicera japonica HOM05D000101 ORTHO05D003282 1.4e-75 287.0 275 57.1
Lj5A14G12 Lonicera japonica HOM05D000101 ORTHO05D003282 3.2e-72 275.8 199 74.4
Lj5P276T14 Lonicera japonica HOM05D000101 ORTHO05D003282 4.0e-67 258.8 251 55.0
Lj5A574T36 Lonicera japonica HOM05D000101 ORTHO05D003282 6.9e-67 258.1 212 64.6
Lj5A570T22 Lonicera japonica HOM05D000101 ORTHO05D003282 2.9e-65 252.7 244 58.2
Lj5C293G2 Lonicera japonica HOM05D000101 ORTHO05D003282 2.9e-65 252.7 277 53.4
Lj5C304T0 Lonicera japonica HOM05D000101 ORTHO05D003282 4.6e-63 245.4 277 52.0
Lj5P276T58 Lonicera japonica HOM05D000101 ORTHO05D003282 5.7e-61 238.4 280 51.4
Lj5A273T45 Lonicera japonica HOM05D000101 ORTHO05D003282 9.0e-59 231.1 278 47.5
Lj5P602T19 Lonicera japonica HOM05D000101 ORTHO05D003282 9.0e-59 231.1 276 49.3
Lj5P278T58 Lonicera japonica HOM05D000101 ORTHO05D003282 2.9e-57 226.1 280 48.9
Lj5A271T96 Lonicera japonica HOM05D000101 ORTHO05D003282 7.9e-55 218.0 274 47.1
Lj5C606T4 Lonicera japonica HOM05D000101 ORTHO05D003282 1.1e-51 207.6 256 48.8
Lj5C363T1 Lonicera japonica HOM05D000101 ORTHO05D003282 5.0e-49 198.7 277 44.4
Lj5C601T5 Lonicera japonica HOM05D000101 ORTHO05D003282 7.2e-48 194.9 268 45.9
Lj5A361T45 Lonicera japonica HOM05D000101 ORTHO05D003282 3.6e-47 192.6 277 43.3
Lj5C276T11 Lonicera japonica HOM05D000101 ORTHO05D003282 2.3e-46 189.9 278 45.0
Lj5C359T4 Lonicera japonica HOM05D000101 ORTHO05D003282 2.3e-46 189.9 280 43.9
Lj5C375T0 Lonicera japonica HOM05D000101 ORTHO05D003282 5.1e-46 188.7 276 41.3
Lj5A368T45 Lonicera japonica HOM05D000101 ORTHO05D003282 6.7e-46 188.3 280 42.9
Lj5C367T1 Lonicera japonica HOM05D000101 ORTHO05D003282 1.1e-45 187.6 276 43.1
Lj5C602G2 Lonicera japonica HOM05D000101 ORTHO05D003282 2.9e-41 172.9 227 47.6
Actinidia38982 Actinidia chinensis HOM05D000101 ORTHO05D003282 1.9e-40 170.2 294 37.4
Lj5P606T11 Lonicera japonica HOM05D000101 ORTHO05D003282 3.2e-40 169.5 192 49.0
Lj5C274T1 Lonicera japonica HOM05D000101 ORTHO05D003282 1.8e-38 163.7 187 50.8
Dinv29663 Davidia involucrata HOM05D000101 ORTHO05D003282 6.7e-38 161.8 303 36.0
CSS0050315 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D003282 2.0e-37 160.2 298 38.9
Lj5C364T5 Lonicera japonica HOM05D000101 ORTHO05D003282 4.4e-37 159.1 233 42.9
CSS0015515 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D003282 1.7e-36 157.1 304 35.5
HanXRQChr03g0065841 Helianthus annuus HOM05D000101 ORTHO05D003282 2.6e-34 149.8 295 34.9
Lj5P277T28 Lonicera japonica HOM05D000101 ORTHO05D003282 3.5e-34 149.4 202 46.5
Lj5P366T9 Lonicera japonica HOM05D000101 ORTHO05D003282 5.9e-34 148.7 244 40.2
Lj5C385T2 Lonicera japonica HOM05D000101 ORTHO05D003282 1.3e-33 147.5 256 39.1
Lj5P280T35 Lonicera japonica HOM05D000101 ORTHO05D003282 1.3e-33 147.5 147 55.8
Actinidia26187 Actinidia chinensis HOM05D000101 ORTHO05D003282 8.5e-33 144.8 268 35.4
RhsimUnG0032200 Rhododendron simsii HOM05D000101 ORTHO05D003282 9.4e-32 141.4 303 33.7
Rhsim11G0119600 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.1e-31 140.2 303 34.3
Lj5C362G2 Lonicera japonica HOM05D000101 ORTHO05D003282 8.0e-31 138.3 240 39.6
Rhsim11G0119400 Rhododendron simsii HOM05D000101 ORTHO05D003282 1.8e-30 137.1 302 33.4
CSS0037676 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D003282 6.7e-30 135.2 304 32.9
DCAR_001710 Daucus carota HOM05D000101 ORTHO05D003282 4.4e-29 132.5 276 33.0
Dinv29665 Davidia involucrata HOM05D000101 ORTHO05D003282 2.8e-28 129.8 305 31.1
Rhsim11G0118800 Rhododendron simsii HOM05D000101 ORTHO05D003282 4.8e-28 129.0 303 32.7
Rhsim11G0120300 Rhododendron simsii HOM05D000101 ORTHO05D003282 1.1e-27 127.9 296 33.1
Rhsim11G0120700 Rhododendron simsii HOM05D000101 ORTHO05D003282 5.3e-27 125.6 296 32.4
RhsimUnG0074100 Rhododendron simsii HOM05D000101 ORTHO05D003282 5.3e-27 125.6 310 32.9
Lsat_1_v5_gn_9_121401 Lactuca sativa HOM05D000101 ORTHO05D003282 4.5e-26 122.5 294 31.6
Actinidia38979 Actinidia chinensis HOM05D000101 ORTHO05D003282 5.9e-26 122.1 298 30.2
Lj5C381T0 Lonicera japonica HOM05D000101 ORTHO05D003282 1.7e-25 120.6 246 36.6
RhsimUnG0074400 Rhododendron simsii HOM05D000101 ORTHO05D003282 3.8e-25 119.4 302 31.1
RhsimUnG0083100 Rhododendron simsii HOM05D000101 ORTHO05D003282 5.0e-25 119.0 301 32.9
vmacro01689 Vaccinium macrocarpon HOM05D000101 ORTHO05D003282 1.1e-24 117.9 274 32.8
RhsimUnG0074800 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.5e-24 116.7 302 30.8
Lj5A278T75 Lonicera japonica HOM05D000101 ORTHO05D003282 3.2e-24 116.3 127 51.2
Lj5C603T9 Lonicera japonica HOM05D000101 ORTHO05D003282 7.2e-24 115.2 245 35.1
RhsimUnG0074600 Rhododendron simsii HOM05D000101 ORTHO05D003282 9.4e-24 114.8 303 31.4
Thecc.03G111000 Theobroma cacao HOM05D000101 ORTHO05D003282 9.4e-24 114.8 304 28.6
ECA234G1788 Erigeron canadensis HOM05D000101 ORTHO05D003282 3.6e-23 112.8 276 31.5
Glyma.08G123300 Glycine max HOM05D000101 ORTHO05D003282 1.8e-22 110.5 307 29.0
RhsimUnG0201700 Rhododendron simsii HOM05D000101 ORTHO05D003282 3.0e-22 109.8 262 32.8
Lj4g0017827 Lotus japonicus HOM05D000101 ORTHO05D003282 5.2e-22 109.0 309 28.2
RhsimUnG0032000 Rhododendron simsii HOM05D000101 ORTHO05D003282 5.2e-22 109.0 298 30.5
Rhsim11G0062300 Rhododendron simsii HOM05D000101 ORTHO05D003282 1.5e-21 107.5 299 31.8
TAR624G1018 Trochodendron aralioides HOM05D000101 ORTHO05D003282 2.6e-21 106.7 300 30.3
COL.COLO4_28824 Corchorus olitorius HOM05D000101 ORTHO05D003282 3.4e-21 106.3 306 27.5
Lju1295A1G15 Lonicera japonica HOM05D000101 ORTHO05D003282 3.4e-21 106.3 65 83.1
Glyma.05G165600 Glycine max HOM05D000101 ORTHO05D003282 4.4e-21 105.9 307 27.7
Cfa026050 Carpinus fangiana HOM05D000101 ORTHO05D003282 2.4e-19 100.1 310 30.0
arahy.Tifrunner.gnm1.ann1.8BMB32 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.2e-18 97.8 296 27.0
PGR042G3275 Punica granatum HOM05D000101 ORTHO05D003282 1.2e-18 97.8 301 29.2
vmacro01690 Vaccinium macrocarpon HOM05D000101 ORTHO05D003282 3.5e-18 96.3 291 28.9
QL02p102261 Quercus lobata HOM05D000101 ORTHO05D003282 4.5e-18 95.9 300 29.3
Rhsim11G0121000 Rhododendron simsii HOM05D000101 ORTHO05D003282 4.5e-18 95.9 303 31.4
Thecc.03G111300 Theobroma cacao HOM05D000101 ORTHO05D003282 7.7e-18 95.1 282 27.7
Rhsim11G0064400 Rhododendron simsii HOM05D000101 ORTHO05D003282 1.0e-17 94.7 268 32.8
Lj5A364T42 Lonicera japonica HOM05D000101 ORTHO05D003282 1.7e-17 94.0 215 34.9
Cfa026040 Carpinus fangiana HOM05D000101 ORTHO05D003282 2.2e-17 93.6 308 30.8
QL02p102904 Quercus lobata HOM05D000101 ORTHO05D003282 2.2e-17 93.6 302 27.5
Duzib205G1449 Durio zibethinus HOM05D000101 ORTHO05D003282 2.9e-17 93.2 304 26.3
GSVIVG01023203001 Vitis vinifera HOM05D000101 ORTHO05D003282 2.9e-17 93.2 301 26.9
Haze_10010 Corylus avellana HOM05D000101 ORTHO05D003282 5.0e-17 92.4 303 29.0
Haze_10012 Corylus avellana HOM05D000101 ORTHO05D003282 1.5e-16 90.9 304 29.9
QL02p102193 Quercus lobata HOM05D000101 ORTHO05D003282 2.5e-16 90.1 298 29.2
QL02p102834 Quercus lobata HOM05D000101 ORTHO05D003282 4.2e-16 89.4 298 28.9
Thecc.02G013800 Theobroma cacao HOM05D000101 ORTHO05D003282 9.4e-16 88.2 299 29.8
GSVIVG01023207001 Vitis vinifera HOM05D000101 ORTHO05D003282 1.2e-15 87.8 304 28.9
arahy.Tifrunner.gnm1.ann1.EZ6YKV Arachis hypogaea HOM05D000101 ORTHO05D003282 1.8e-14 84.0 297 26.3
Lj5P576T16 Lonicera japonica HOM05D000101 ORTHO05D003282 1.8e-14 84.0 45 84.4
Lj5P280T38 Lonicera japonica HOM05D000101 ORTHO05D003282 2.3e-14 83.6 88 52.3
Gohir.A07G057900 Gossypium hirsutum HOM05D000101 ORTHO05D003282 4.0e-14 82.8 226 27.4
Gorai.001G066200 Gossypium raimondii HOM05D000101 ORTHO05D003282 4.0e-14 82.8 226 27.4
Haze_10009 Corylus avellana HOM05D000101 ORTHO05D003282 5.2e-14 82.4 220 31.8
Eucgr.G00112 Eucalyptus grandis HOM05D000101 ORTHO05D003282 6.8e-14 82.0 309 27.8
Gohir.D07G062700 Gossypium hirsutum HOM05D000101 ORTHO05D003282 6.8e-14 82.0 226 27.4
Eucgr.G00160 Eucalyptus grandis HOM05D000101 ORTHO05D003282 1.2e-13 81.3 298 26.2
PGR042G3596 Punica granatum HOM05D000101 ORTHO05D003282 1.5e-13 80.9 298 27.9
GSVIVG01023210001 Vitis vinifera HOM05D000101 ORTHO05D003282 1.5e-13 80.9 298 27.2
Eucgr.G00162 Eucalyptus grandis HOM05D000101 ORTHO05D003282 4.4e-13 79.3 287 27.5
QL02p102988 Quercus lobata HOM05D000101 ORTHO05D003282 7.5e-13 78.6 298 27.2
VMungo0251G1948 Vigna mungo HOM05D000101 ORTHO05D003282 7.5e-13 78.6 250 29.2
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 2.8e-12 76.6 290 25.9
QL02p102345 Quercus lobata HOM05D000101 ORTHO05D003282 2.8e-12 76.6 298 26.8
Eucgr.G00249 Eucalyptus grandis HOM05D000101 ORTHO05D003282 8.3e-12 75.1 304 28.0
Eucgr.J02649 Eucalyptus grandis HOM05D000101 ORTHO05D003282 1.1e-11 74.7 304 28.0
HanXRQChr15g0485021 Helianthus annuus HOM05D000101 ORTHO05D003282 5.4e-11 72.4 256 25.4
Dinv06313 Davidia involucrata HOM05D000101 ORTHO05D003282 7.0e-11 72.0 259 25.9
Thecc.02G013100 Theobroma cacao HOM05D000101 ORTHO05D003282 1.2e-10 71.2 293 27.3
Ciclev10018762m.g Citrus clementina HOM05D000101 ORTHO05D003282 1.6e-10 70.9 143 32.2
Nn1g09693 Nelumbo nucifera HOM05D000101 ORTHO05D003282 1.6e-10 70.9 296 27.0
Ciclev10018699m.g Citrus clementina HOM05D000101 ORTHO05D003282 4.5e-10 69.3 245 23.7
MBI12_g17628_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D003282 7.7e-10 68.6 309 26.9
Eucgr.L00913 Eucalyptus grandis HOM05D000101 ORTHO05D003282 1.3e-09 67.8 302 26.2
QL10p054757 Quercus lobata HOM05D000101 ORTHO05D003282 1.3e-09 67.8 99 35.4
Rhsim11G0120100 Rhododendron simsii HOM05D000101 ORTHO05D003282 1.3e-09 67.8 118 38.1
QL02p102693 Quercus lobata HOM05D000101 ORTHO05D003282 2.3e-09 67.0 298 26.2
Eucgr.L01865 Eucalyptus grandis HOM05D000101 ORTHO05D003282 2.9e-09 66.6 300 25.7
Atru.chr4.1398 Acer truncatum HOM05D000092 ORTHO05D003282 3.8e-09 66.2 133 33.1
Eucgr.H05030 Eucalyptus grandis HOM05D000101 ORTHO05D003282 6.6e-09 65.5 309 26.2
Eucgr.G00248 Eucalyptus grandis HOM05D000101 ORTHO05D003282 1.5e-08 64.3 207 26.6
HanXRQChr05g0159071 Helianthus annuus HOM05D000101 ORTHO05D003282 4.3e-08 62.8 269 23.0
QL10p054773 Quercus lobata HOM05D000101 ORTHO05D003282 4.3e-08 62.8 289 24.2
Nn5g27601 Nelumbo nucifera HOM05D000092 ORTHO05D000042 7.3e-08 62.0 95 37.9
TAR636G0203 Trochodendron aralioides HOM05D000092 ORTHO05D000042 7.3e-08 62.0 149 30.2
QL10p054822 Quercus lobata HOM05D000101 ORTHO05D003282 9.5e-08 61.6 279 24.0
QL93p1902_0089 Quercus lobata HOM05D000101 ORTHO05D003282 9.5e-08 61.6 69 47.8
QL93p1902_0371 Quercus lobata HOM05D000101 ORTHO05D003282 9.5e-08 61.6 69 46.4
Eucgr.G00087 Eucalyptus grandis HOM05D000101 ORTHO05D003282 1.6e-07 60.8 309 25.9
QL93p1902_0702 Quercus lobata HOM05D000101 ORTHO05D003282 1.6e-07 60.8 146 29.5
Manes.10G111300 Manihot esculenta HOM05D000101 ORTHO05D003282 3.6e-07 59.7 291 26.1
Dinv19438 Davidia involucrata HOM05D000208 ORTHO05D002559 4.7e-07 59.3 178 28.7
RhsimUnG0201900 Rhododendron simsii HOM05D000101 ORTHO05D003282 8.0e-07 58.5 113 31.0
Potri.006G273250 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.0e-06 58.2 148 29.1
Atru.chr4.1399 Acer truncatum HOM05D000101 ORTHO05D002559 1.8e-06 57.4 84 36.9
Sabra06G0211600 Salix brachista HOM05D000092 ORTHO05D000042 2.3e-06 57.0 159 25.8
Gohir.A11G280500 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.0e-06 56.6 122 28.7
Gohir.D11G290800 Gossypium hirsutum HOM05D000092 ORTHO05D000089 3.0e-06 56.6 122 28.7
Gorai.007G314700 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.0e-06 56.6 122 28.7
QL07p010603 Quercus lobata HOM05D000092 ORTHO05D000042 3.0e-06 56.6 158 25.3
Thecc.02G013700 Theobroma cacao HOM05D000101 ORTHO05D002559 3.0e-06 56.6 157 29.3
PGR042G3789 Punica granatum HOM05D000660 ORTHO05D002559 6.8e-06 55.5 311 25.1
Lsat_1_v5_gn_9_121300 Lactuca sativa HOM05D000041 ORTHO05D002559 8.9e-06 55.1 160 28.8
Lj5A383G14 Lonicera japonica HOM05D000101 ORTHO05D002559 8.9e-06 55.1 272 21.3
Lj5C375T3 Lonicera japonica HOM05D000101 ORTHO05D002559 8.9e-06 55.1 174 24.7
Rhsim13G0170800 Rhododendron simsii HOM05D000101 ORTHO05D000089 8.9e-06 55.1 101 29.7


User provided reference genes

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