Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 9.3e-104 380.2 188 100.0
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 9.3e-104 380.2 188 100.0
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 8.8e-62 240.7 126 96.8
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 1.7e-57 226.5 126 88.9
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.5e-56 223.4 126 84.9
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.5e-56 222.6 126 84.9
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 3.3e-56 222.2 126 84.9
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 3.3e-56 222.2 125 86.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 4.3e-56 221.9 126 86.5
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 5.6e-56 221.5 126 85.7
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 5.6e-56 221.5 126 84.9
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 5.6e-56 221.5 126 84.1
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 9.5e-56 220.7 126 83.3
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.2e-55 220.3 126 84.1
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.2e-55 220.3 126 84.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.6e-55 219.9 126 83.3
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-55 219.9 126 83.3
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.6e-55 219.9 126 83.3
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 2.1e-55 219.5 126 84.9
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.1e-55 219.5 126 83.3
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 2.8e-55 219.2 126 84.1
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.8e-55 219.2 125 84.8
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.8e-55 219.2 126 83.3
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.8e-55 219.2 126 84.9
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 2.8e-55 219.2 126 83.3
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 3.6e-55 218.8 126 84.1
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 4.7e-55 218.4 126 84.9
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 4.7e-55 218.4 126 84.9
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 4.7e-55 218.4 126 84.9
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 4.7e-55 218.4 126 84.9
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 6.1e-55 218.0 126 84.1
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 6.1e-55 218.0 126 84.1
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 6.1e-55 218.0 126 84.1
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 8.0e-55 217.6 126 83.3
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 8.0e-55 217.6 126 84.1
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.0e-54 217.2 126 84.9
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.4e-54 216.9 126 82.5
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.4e-54 216.9 126 83.3
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 1.4e-54 216.9 125 82.4
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.8e-54 216.5 126 84.1
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.8e-54 216.5 126 82.5
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.8e-54 216.5 125 83.2
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 2.3e-54 216.1 126 83.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 4.0e-54 215.3 126 81.7
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 4.0e-54 215.3 126 81.7
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 4.0e-54 215.3 126 81.7
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 5.2e-54 214.9 126 82.5
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.2e-54 214.9 161 68.3
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 5.2e-54 214.9 126 82.5
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 6.8e-54 214.5 126 82.5
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 6.8e-54 214.5 126 81.7
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 6.8e-54 214.5 126 83.3
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 8.9e-54 214.2 126 83.3
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.2e-53 213.8 126 82.5
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.2e-53 213.8 126 81.0
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.5e-53 213.4 126 82.5
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 2.0e-53 213.0 126 81.0
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.0e-53 213.0 133 78.9
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 2.0e-53 213.0 167 68.3
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 2.6e-53 212.6 126 83.3
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 2.6e-53 212.6 126 81.7
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.6e-53 212.6 126 82.5
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.6e-53 212.6 126 82.5
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 3.4e-53 212.2 126 81.7
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 4.4e-53 211.8 126 81.7
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 4.4e-53 211.8 126 80.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 5.7e-53 211.5 126 81.0
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 7.5e-53 211.1 126 80.2
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 7.5e-53 211.1 126 81.0
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 7.5e-53 211.1 166 67.5
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 2.2e-52 209.5 126 81.0
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 2.2e-52 209.5 126 81.0
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.4e-51 206.8 126 80.2
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.8e-51 206.5 126 80.2
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.8e-51 206.5 126 78.6
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.8e-51 206.5 126 80.2
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.4e-51 206.1 128 78.9
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 9.2e-51 204.1 126 78.6
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 1.2e-50 203.8 138 73.9
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.2e-50 203.8 126 77.8
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 1.2e-50 203.8 128 78.9
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 1.6e-50 203.4 126 77.0
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.6e-50 203.4 126 77.0
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 7.8e-50 201.1 126 77.8
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.7e-49 199.9 125 76.8
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 2.3e-49 199.5 126 77.0
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.9e-49 198.7 161 64.6
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 3.9e-49 198.7 126 75.4
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 3.9e-49 198.7 126 75.4
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 5.0e-49 198.4 130 75.4
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 6.6e-49 198.0 126 75.4
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 8.6e-49 197.6 125 75.2
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 3.3e-48 195.7 126 76.2
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 5.6e-48 194.9 126 74.6
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.1e-47 193.0 125 73.6
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 4.7e-47 191.8 125 72.8
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.2e-42 177.2 101 85.1
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 3.9e-41 172.2 125 64.0
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 4.3e-40 168.7 97 83.5
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 5.2e-38 161.8 133 65.4
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 2.9e-36 156.0 125 58.4
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 7.1e-35 151.4 125 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 1.6e-34 150.2 125 56.8
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.2e-31 140.6 155 44.5
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 1.1e-30 137.5 93 72.0
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 9.9e-29 131.0 100 68.0
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 3.0e-25 119.4 67 86.6
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.6e-21 106.3 59 79.7
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.2e-19 99.4 45 93.3
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 3.5e-18 95.9 91 46.2
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 8.7e-17 91.3 46 87.0
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 4.3e-16 89.0 121 36.4
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 8.1e-15 84.7 46 82.6
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-14 84.0 97 53.6
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.0e-13 80.1 128 35.9
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 7.6e-13 78.2 45 73.3
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.9e-11 73.6 112 45.5
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 5.1e-09 65.5 38 76.3
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 9.6e-08 61.2 45 46.7
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.8e-06 57.0 54 57.4
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.8e-06 57.0 54 57.4
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 4.0e-06 55.8 33 72.7


User provided reference genes

Program Settings