Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C372T3 Lonicera japonica HOM05D003710 ORTHO05D234170 3.5e-112 408.3 204 100.0
Lj2C279G11 Lonicera japonica HOM05D003710 ORTHO05D008843 7.4e-30 134.8 221 42.5
CSS0004306 Camellia sinensis var. sinensis HOM05D003710 ORTHO05D005250 5.7e-22 108.6 109 50.5
CSS0031757 Camellia sinensis var. sinensis HOM05D003710 ORTHO05D005250 8.2e-21 104.8 109 50.5
Dinv40474 Davidia involucrata HOM05D003710 ORTHO05D005250 1.4e-20 104.0 109 49.5
Ca_18478_v3 Cicer arietinum L. HOM05D003710 ORTHO05D005250 7.0e-20 101.7 117 46.2
Dinv18991 Davidia involucrata HOM05D003710 ORTHO05D005250 7.0e-20 101.7 106 51.9
TPR.G15384 Trifolium pratense HOM05D003710 ORTHO05D005250 7.0e-20 101.7 117 46.2
Actinidia05569 Actinidia chinensis HOM05D003710 ORTHO05D005250 2.0e-19 100.1 288 28.8
Lj4g0027727 Lotus japonicus HOM05D003710 ORTHO05D005250 2.0e-19 100.1 109 48.6
Medtr4g091320 Medicago truncatula HOM05D003710 ORTHO05D005250 2.6e-19 99.8 117 45.3
Phvul.002G221300 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 2.6e-19 99.8 117 44.4
VMungo0251G0300 Vigna mungo HOM05D003710 ORTHO05D005250 2.6e-19 99.8 117 45.3
CANSAT56G1827 Cannabis sativa HOM05D003710 ORTHO05D005250 4.5e-19 99.0 109 47.7
Glyma.13G246700 Glycine max HOM05D003710 ORTHO05D005250 5.9e-19 98.6 109 46.8
GSVIVG01003182001 Vitis vinifera HOM05D003710 ORTHO05D005250 7.7e-19 98.2 115 47.0
Glyma.07G189700 Glycine max HOM05D003710 ORTHO05D005250 1.0e-18 97.8 117 46.2
VMungo0540G1761 Vigna mungo HOM05D003710 ORTHO05D005250 1.7e-18 97.1 109 45.9
Lalb_Chr09g0327311 Lupinus albus HOM05D003710 ORTHO05D005250 2.9e-18 96.3 109 45.9
MBI02_g47448_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 2.9e-18 96.3 112 46.4
Phvul.006G192500 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 2.9e-18 96.3 106 46.2
Cpa.g.sc27.132 Carica papaya HOM05D003710 ORTHO05D005250 5.0e-18 95.5 106 49.1
CDE05G3638 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 5.0e-18 95.5 109 43.1
A09p16800 Brassica napus HOM05D003710 ORTHO05D005250 6.5e-18 95.1 107 42.1
BraA09t37317Z Brassica rapa HOM05D003710 ORTHO05D005250 6.5e-18 95.1 107 42.1
Glyma.08G059600 Glycine max HOM05D003710 ORTHO05D005250 8.5e-18 94.7 109 46.8
Oeu014712.1 Olea europaea HOM05D003710 ORTHO05D005250 8.5e-18 94.7 106 47.2
Oeu036687.1 Olea europaea HOM05D003710 ORTHO05D005250 8.5e-18 94.7 106 46.2
BolC9t54966H Brassica oleracea HOM05D003710 ORTHO05D005250 1.1e-17 94.4 107 42.1
FAN11G0401 Fragaria x ananassa HOM05D003710 ORTHO05D005250 1.1e-17 94.4 106 45.3
Lj6g0025319 Lotus japonicus HOM05D003710 ORTHO05D005250 1.1e-17 94.4 109 47.7
BcaB07g31272 Brassica carinata HOM05D003710 ORTHO05D005250 1.5e-17 94.0 107 43.0
Sed0006031 Sechium edule HOM05D003710 ORTHO05D005250 1.5e-17 94.0 109 43.1
FvH4_3g03930 Fragaria vesca HOM05D003710 ORTHO05D005250 2.5e-17 93.2 106 45.3
FAN16G2996 Fragaria x ananassa HOM05D003710 ORTHO05D005250 2.5e-17 93.2 106 45.3
RcHm_v2.0_Chr5g0006221 Rosa chinensis HOM05D003710 ORTHO05D005250 2.5e-17 93.2 106 46.2
TWI38G1538 Tripterygium wilfordii HOM05D003710 ORTHO05D005250 2.5e-17 93.2 109 47.7
C09p20690 Brassica napus HOM05D003710 ORTHO05D005250 3.2e-17 92.8 107 42.1
CiPaw.10G118800 Carya illinoinensis HOM05D003710 ORTHO05D005250 3.2e-17 92.8 113 46.0
Gohir.A06G123400 Gossypium hirsutum HOM05D003710 ORTHO05D005250 3.2e-17 92.8 106 47.2
Oeu038209.1 Olea europaea HOM05D003710 ORTHO05D005250 3.2e-17 92.8 169 36.7
TWI38G2371 Tripterygium wilfordii HOM05D003710 ORTHO05D005250 3.2e-17 92.8 109 46.8
Duzib160G0368 Durio zibethinus HOM05D003710 ORTHO05D005250 4.2e-17 92.4 106 46.2
Gohir.D06G128300 Gossypium hirsutum HOM05D003710 ORTHO05D005250 4.2e-17 92.4 106 47.2
Gorai.010G149900 Gossypium raimondii HOM05D003710 ORTHO05D005250 4.2e-17 92.4 106 47.2
Nitab4.5_0000190g0040 Nicotiana tabacum HOM05D003710 ORTHO05D005250 4.2e-17 92.4 163 35.6
MSTRG.13179 Avicennia marina HOM05D003710 ORTHO05D005250 5.5e-17 92.0 108 46.3
MSTRG.14675 Avicennia marina HOM05D003710 ORTHO05D005250 5.5e-17 92.0 107 44.9
BcaC04g22323 Brassica carinata HOM05D003710 ORTHO05D005250 5.5e-17 92.0 288 24.3
CiPaw.09G157600 Carya illinoinensis HOM05D003710 ORTHO05D005250 5.5e-17 92.0 116 46.6
FAN25G1364 Fragaria x ananassa HOM05D003710 ORTHO05D005250 5.5e-17 92.0 106 45.3
Lalb_Chr16g0383391 Lupinus albus HOM05D003710 ORTHO05D005250 5.5e-17 92.0 109 44.0
FAN21G1071 Fragaria x ananassa HOM05D003710 ORTHO05D005250 7.2e-17 91.7 106 45.3
Lalb_Chr18g0059951 Lupinus albus HOM05D003710 ORTHO05D005250 7.2e-17 91.7 106 46.2
Nn1g03878 Nelumbo nucifera HOM05D003710 ORTHO05D005250 7.2e-17 91.7 271 28.8
THA.LOC104819023 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 7.2e-17 91.7 106 41.5
Haze_06581 Corylus avellana HOM05D003710 ORTHO05D005250 9.4e-17 91.3 109 45.9
CsaV3_1G011760 Cucumis sativus L. HOM05D003710 ORTHO05D005250 9.4e-17 91.3 160 33.8
Manes.17G033200 Manihot esculenta HOM05D003710 ORTHO05D005250 9.4e-17 91.3 109 45.0
Rhsim02G0119400 Rhododendron simsii HOM05D003710 ORTHO05D005250 9.4e-17 91.3 106 43.4
Cc02_g12370 Coffea canephora HOM05D003710 ORTHO05D005250 1.2e-16 90.9 105 45.7
Lalb_Chr20g0122311 Lupinus albus HOM05D003710 ORTHO05D005250 1.6e-16 90.5 106 47.2
Nitab4.5_0008791g0010 Nicotiana tabacum HOM05D003710 ORTHO05D005250 1.6e-16 90.5 174 33.3
MELO3C002554.2 Cucumis melo HOM05D003710 ORTHO05D005250 2.1e-16 90.1 160 33.8
Hma1.2p1_0144F.1_g064590 Hydrangea macrophylla HOM05D003710 ORTHO05D005250 2.1e-16 90.1 182 34.1
Manes.16G020200 Manihot esculenta HOM05D003710 ORTHO05D005250 2.1e-16 90.1 109 41.3
Peaxi162Scf00619g00092 Petunia axillaris HOM05D003710 ORTHO05D005250 2.1e-16 90.1 174 35.1
Sp1g09920 Schrenkiella parvula HOM05D003710 ORTHO05D005250 2.1e-16 90.1 136 35.3
Cfa016086 Carpinus fangiana HOM05D003710 ORTHO05D005250 2.7e-16 89.7 109 45.0
Duzib235G1103 Durio zibethinus HOM05D003710 ORTHO05D005250 2.7e-16 89.7 106 47.2
ECA234G2608 Erigeron canadensis HOM05D003710 ORTHO05D005250 2.7e-16 89.7 113 47.8
Lj1P1213T32 Lonicera japonica HOM05D003710 ORTHO05D005250 2.7e-16 89.7 174 35.6
QL05p081253 Quercus lobata HOM05D003710 ORTHO05D005250 2.7e-16 89.7 109 43.1
SalBow8G3579 Salvia bowleyana HOM05D003710 ORTHO05D005250 2.7e-16 89.7 109 45.0
ClCG03G005500 Citrullus lanatus HOM05D003710 ORTHO05D005250 3.6e-16 89.4 160 33.8
Gohir.D05G168800 Gossypium hirsutum HOM05D003710 ORTHO05D005250 3.6e-16 89.4 106 44.3
Gorai.009G174000 Gossypium raimondii HOM05D003710 ORTHO05D005250 3.6e-16 89.4 106 44.3
Hma1.2p1_1182F.1_g264790 Hydrangea macrophylla HOM05D003710 ORTHO05D005250 3.6e-16 89.4 112 45.5
Oeu038211.1 Olea europaea HOM05D003710 ORTHO05D005250 3.6e-16 89.4 169 36.1
arahy.Tifrunner.gnm1.ann1.FW8YYF Arachis hypogaea HOM05D003710 ORTHO05D005250 6.1e-16 88.6 109 43.1
Cfa000347 Carpinus fangiana HOM05D003710 ORTHO05D005250 6.1e-16 88.6 109 44.0
AL2G14980 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 8.0e-16 88.2 107 39.3
TAR626G0587 Trochodendron aralioides HOM05D003710 ORTHO05D005250 8.0e-16 88.2 110 45.5
Ah.14g088900 Amaranthus hybridus HOM05D003710 ORTHO05D005250 1.0e-15 87.8 106 40.6
Thhalv10007228m.g Eutrema salsugineum HOM05D003710 ORTHO05D005250 1.0e-15 87.8 133 33.8
Gohir.A05G165800 Gossypium hirsutum HOM05D003710 ORTHO05D005250 1.0e-15 87.8 106 44.3
Psat7g108400 Pisum sativum HOM05D003710 ORTHO05D005250 1.0e-15 87.8 209 32.1
Thecc.06G200200 Theobroma cacao HOM05D003710 ORTHO05D005250 1.0e-15 87.8 106 44.3
TAR624G0426 Trochodendron aralioides HOM05D003710 ORTHO05D005250 1.0e-15 87.8 125 41.6
TAR627G0563 Trochodendron aralioides HOM05D003710 ORTHO05D005250 1.0e-15 87.8 109 46.8
CARHR051290 Cardamine hirsuta HOM05D003710 ORTHO05D005250 1.4e-15 87.4 107 40.2
Nn1g06778 Nelumbo nucifera HOM05D003710 ORTHO05D005250 1.4e-15 87.4 169 34.3
Aa31LG2G9320 Aethionema arabicum HOM05D003710 ORTHO05D005250 1.8e-15 87.0 106 39.6
Ah.09g236190 Amaranthus hybridus HOM05D003710 ORTHO05D005250 1.8e-15 87.0 174 31.6
Migut.H01519 Erythranthe guttata HOM05D003710 ORTHO05D005250 1.8e-15 87.0 172 32.0
Gohir.A10G021400 Gossypium hirsutum HOM05D003710 ORTHO05D005250 1.8e-15 87.0 124 40.3
Gohir.D10G022200 Gossypium hirsutum HOM05D003710 ORTHO05D005250 1.8e-15 87.0 124 40.3
AL1G22280 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 2.3e-15 86.7 133 34.6
arahy.Tifrunner.gnm1.ann1.LGD9DB Arachis hypogaea HOM05D003710 ORTHO05D005250 2.3e-15 86.7 109 43.1
Ciclev10014752m.g Citrus clementina HOM05D003710 ORTHO05D005250 2.3e-15 86.7 106 43.4
COL.COLO4_31591 Corchorus olitorius HOM05D003710 ORTHO05D005250 2.3e-15 86.7 108 45.4
Eucgr.D00719 Eucalyptus grandis HOM05D003710 ORTHO05D005250 2.3e-15 86.7 125 39.2
Lsat_1_v5_gn_4_56781 Lactuca sativa HOM05D003710 ORTHO05D005250 2.3e-15 86.7 113 46.9
AT1G61350 Arabidopsis thaliana HOM05D003710 ORTHO05D005250 3.0e-15 86.3 107 39.3
Carub.0001s1087 Capsella rubella HOM05D003710 ORTHO05D005250 3.0e-15 86.3 106 39.6
Gorai.011G023300 Gossypium raimondii HOM05D003710 ORTHO05D005250 3.0e-15 86.3 124 40.3
Potri.011G042300 Populus trichocarpa HOM05D003710 ORTHO05D005250 3.0e-15 86.3 109 44.0
PSO832G4111 Papaver somniferum HOM05D003710 ORTHO05D005250 4.0e-15 85.9 125 38.4
Carub.0002s0382 Capsella rubella HOM05D003710 ORTHO05D005250 5.2e-15 85.5 107 39.3
CAN.G424.19 Capsicum annuum HOM05D003710 ORTHO05D005250 5.2e-15 85.5 107 47.7
Sed0008753 Sechium edule HOM05D003710 ORTHO05D005250 5.2e-15 85.5 160 31.9
EL10Ac8g20535 Beta vulgaris HOM05D003710 ORTHO05D005250 6.7e-15 85.1 109 43.1
Migut.H01147 Erythranthe guttata HOM05D003710 ORTHO05D005250 6.7e-15 85.1 107 42.1
THA.LOC104809545 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 6.7e-15 85.1 106 38.7
Sabra04G0019500 Salix brachista HOM05D003710 ORTHO05D005250 8.8e-15 84.7 109 43.1
ECA248G2720 Erigeron canadensis HOM05D003710 ORTHO05D005250 1.5e-14 84.0 104 46.2
Glyma.15G067200 Glycine max HOM05D003710 ORTHO05D005250 1.5e-14 84.0 110 42.7
PSO210G5044 Papaver somniferum HOM05D003710 ORTHO05D005250 1.5e-14 84.0 125 38.4
Aqoxy1G03894 Aquilegia oxysepala HOM05D003710 ORTHO05D005250 2.0e-14 83.6 134 34.3
Potri.004G033800 Populus trichocarpa HOM05D003710 ORTHO05D005250 2.0e-14 83.6 109 42.2
Sp2g03150 Schrenkiella parvula HOM05D003710 ORTHO05D005250 2.0e-14 83.6 105 38.1
Sc17g0006660 Simmondsia chinensis HOM05D003710 ORTHO05D005250 2.0e-14 83.6 103 41.7
SGA_v2.0_scaffold159G37691 Striga asiatica HOM05D003710 ORTHO05D005250 2.0e-14 83.6 179 31.8
Sabra11G0029000 Salix brachista HOM05D003710 ORTHO05D005250 3.3e-14 82.8 116 40.5
AUR62014713 Chenopodium quinoa HOM05D003710 ORTHO05D005250 4.4e-14 82.4 110 40.9
Lsat_1_v5_gn_1_122121 Lactuca sativa HOM05D003710 ORTHO05D005250 4.4e-14 82.4 110 43.6
Atru.chr10.2018 Acer truncatum HOM05D003710 ORTHO05D005250 5.7e-14 82.0 106 41.5
DCAR_004141 Daucus carota HOM05D003710 ORTHO05D005250 5.7e-14 82.0 175 33.1
Prupe.4G037700 Prunus persica HOM05D003710 ORTHO05D005250 7.5e-14 81.6 111 44.1
PGR004G0177 Punica granatum HOM05D003710 ORTHO05D005250 9.7e-14 81.3 107 42.1
CAN.G1679.1 Capsicum annuum HOM05D003710 ORTHO05D005250 1.3e-13 80.9 104 47.1
MBI18_g07611_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 1.3e-13 80.9 109 41.3
Thhalv10023383m.g Eutrema salsugineum HOM05D003710 ORTHO05D005250 1.7e-13 80.5 192 27.6
HanXRQChr01g0004811 Helianthus annuus HOM05D003710 ORTHO05D005250 2.2e-13 80.1 90 48.9
MD10G1303900 Malus domestica HOM05D003710 ORTHO05D005250 2.2e-13 80.1 109 43.1
Sopen02g024000 Solanum pennellii HOM05D003710 ORTHO05D005250 2.2e-13 80.1 164 34.8
Solyc02g079200.1 Solanum lycopersicum HOM05D003710 ORTHO05D005250 2.8e-13 79.7 164 34.8
AUR62012482 Chenopodium quinoa HOM05D003710 ORTHO05D005250 3.7e-13 79.3 107 39.3
PGSC0003DMG400022403 Solanum tuberosum HOM05D003710 ORTHO05D005250 3.7e-13 79.3 164 34.8
MD05G1326000 Malus domestica HOM05D003710 ORTHO05D005250 6.3e-13 78.6 109 42.2
HanXRQChr16g0517601 Helianthus annuus HOM05D003710 ORTHO05D005250 4.1e-12 75.9 111 42.3
Eucgr.E03808 Eucalyptus grandis HOM05D003710 ORTHO05D005250 2.0e-11 73.6 111 39.6
Eucgr.E03694 Eucalyptus grandis HOM05D003710 ORTHO05D005250 1.7e-10 70.5 111 38.7
HPP92_016552 Vanilla planifolia HOM05D003710 ORTHO05D005250 1.7e-10 70.5 109 38.5
unitig_749.g13637 Utricularia gibba HOM05D003710 ORTHO05D005250 2.2e-10 70.1 94 40.4
HPP92_014081 Vanilla planifolia HOM05D003710 ORTHO05D005250 8.5e-10 68.2 127 33.1
unitig_26.g9375 Utricularia gibba HOM05D003710 ORTHO05D005250 4.2e-09 65.9 75 46.7
CDE02G4372 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 6.1e-08 62.0 184 27.7
Zm00001eb324200 Zea mays HOM05D003710 ORTHO05D005250 6.1e-08 62.0 96 36.5
Zm00001eb106840 Zea mays HOM05D003710 ORTHO05D005250 1.4e-07 60.8 112 32.1
Actinidia24057 Actinidia chinensis HOM05D003710 ORTHO05D005250 2.3e-07 60.1 112 34.8
Os07g0560300 Oryza sativa ssp. japonica HOM05D003710 ORTHO05D005250 8.8e-07 58.2 91 37.4
Zm00001eb139280 Zea mays HOM05D003710 ORTHO05D005250 3.4e-06 56.2 93 35.5


User provided reference genes

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