Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1949.5 1005 100.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1531.9 980 79.9
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1526.1 986 76.9
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1518.4 985 76.3
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1516.1 986 76.2
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1515.7 985 77.3
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1502.3 974 76.2
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1500.3 974 76.4
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1500.0 985 76.5
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1493.0 1010 76.5
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1492.6 986 75.9
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1492.6 987 76.8
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1489.9 985 76.6
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1488.8 987 75.9
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1482.6 988 76.0
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1471.4 988 74.5
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1469.9 982 74.9
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1467.2 1069 70.2
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1465.7 986 74.9
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1463.0 985 75.2
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1459.5 964 76.8
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1457.2 989 74.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1456.8 985 74.2
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1450.3 985 73.7
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 985 74.1
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1447.6 985 74.2
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1447.2 985 74.5
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1444.1 955 76.0
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1441.0 987 74.7
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1438.3 987 73.9
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1437.6 985 73.6
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1435.2 985 73.7
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1433.7 985 73.0
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1432.2 985 73.4
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 985 73.3
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 985 72.5
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1426.8 988 72.8
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1425.6 985 73.6
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1424.8 988 73.3
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1424.8 985 72.3
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1423.3 990 72.8
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 985 72.2
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1420.6 985 72.5
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1417.5 986 72.4
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1416.7 987 72.1
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1416.4 986 72.4
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1414.1 985 72.5
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1412.9 985 72.6
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1411.7 986 72.0
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1410.6 985 72.4
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1409.8 988 72.3
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1407.9 986 71.9
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1407.9 986 72.0
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1407.1 987 71.9
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1406.7 999 72.0
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1404.0 987 73.7
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1402.5 987 72.4
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 985 71.5
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 985 71.7
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1397.5 985 70.9
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1396.7 985 71.0
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1396.7 986 72.1
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1391.7 987 71.9
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1387.5 986 70.4
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1385.5 985 72.2
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1381.3 985 70.4
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1380.5 985 70.4
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1379.0 957 74.1
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1378.6 958 72.8
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1375.9 973 71.7
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1375.9 973 71.7
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1373.2 988 71.6
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1367.1 985 69.4
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 989 70.8
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1358.6 955 71.9
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1357.0 992 70.5
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1355.9 990 69.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1355.5 895 76.1
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1351.7 986 70.7
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1350.1 985 68.4
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1342.4 985 68.8
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1335.1 985 68.4
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1335.1 988 69.2
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1329.7 985 68.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1322.4 985 69.0
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 999 67.4
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1319.7 987 69.2
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1312.0 985 68.8
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1310.0 913 72.6
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1296.2 990 66.6
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1282.7 1020 64.7
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1281.9 987 66.5
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1280.8 938 69.8
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1278.8 987 66.3
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1277.3 993 66.1
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1275.0 986 66.0
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1267.3 987 65.9
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1260.4 958 67.3
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1259.6 906 73.4
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1214.5 966 63.0
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1205.7 857 73.3
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1171.8 989 59.3
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1129.8 993 60.6
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 7.5e-301 1037.3 724 73.2
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 5.2e-294 1014.6 906 59.9
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.2e-290 1003.4 987 52.7
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 7.3e-280 967.6 993 49.6
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.4e-278 962.6 993 52.2
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 5.2e-278 961.4 990 49.5
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 5.2e-278 961.4 995 52.2
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.2e-275 952.2 611 77.6
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.4e-270 936.8 598 77.9
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 5.8e-269 931.4 995 51.1
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 7.9e-266 921.0 842 58.6
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.0e-249 865.9 743 60.0
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.2e-242 844.0 978 45.1
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 2.2e-239 833.2 802 52.7
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 2.4e-238 829.7 602 70.4
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 3.8e-212 742.7 911 43.4
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 4.1e-206 722.6 1075 37.6
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 7.3e-171 605.5 422 73.5
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 7.1e-150 535.8 304 86.2
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.2e-149 535.0 356 74.4
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 4.9e-143 513.1 312 80.1
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 2.2e-122 444.5 1187 28.8
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-94 352.4 259 68.7
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-94 352.4 259 68.7
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 3.2e-81 307.8 1118 27.1
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.1e-52 211.5 234 49.1
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 3.9e-47 194.5 932 22.9
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 8.4e-34 150.2 122 67.2
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 2.7e-32 145.2 145 51.7
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.4e-28 132.9 144 50.0
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.0e-26 126.7 104 62.5
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.2e-24 119.8 81 70.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.2e-16 93.2 64 71.9
Pp3c1_21110 Physcomitrium patens HOM05D002636 ORTHO05D003490 7.4e-06 57.4 279 22.6
Pp3c1_21114 Physcomitrium patens HOM05D002636 ORTHO05D003490 7.4e-06 57.4 279 22.6


User provided reference genes

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