Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C33T3 Lonicera japonica HOM05D000139 ORTHO05D020258 6.8e-54 213.8 110 100.0
Actinidia21801 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.3e-25 119.8 112 62.5
Actinidia32201 Actinidia chinensis HOM05D000139 ORTHO05D000103 4.3e-24 114.8 97 64.9
Dinv20412 Davidia involucrata HOM05D000139 ORTHO05D000103 6.2e-23 110.9 116 61.2
CSS0043509 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D020258 1.8e-22 109.4 114 57.9
CSS0007039 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 4.0e-22 108.2 114 57.0
CAN.G862.44 Capsicum annuum HOM05D000139 ORTHO05D000103 4.0e-22 108.2 98 62.2
Nitab4.5_0002795g0010 Nicotiana tabacum HOM05D000139 ORTHO05D000103 2.0e-21 105.9 98 62.2
CAN.G825.1 Capsicum annuum HOM05D000139 ORTHO05D000103 3.4e-21 105.1 98 62.2
Nitab4.5_0002716g0040 Nicotiana tabacum HOM05D000139 ORTHO05D000103 3.4e-21 105.1 98 61.2
Nitab4.5_0006232g0060 Nicotiana tabacum HOM05D000139 ORTHO05D000103 4.4e-21 104.8 101 60.4
Sopen06g022440 Solanum pennellii HOM05D000139 ORTHO05D000103 4.4e-21 104.8 98 61.2
CiPaw.01G216400 Carya illinoinensis HOM05D000139 ORTHO05D000103 7.6e-21 104.0 119 51.3
Solyc03g122240.3 Solanum lycopersicum HOM05D000139 ORTHO05D000103 7.6e-21 104.0 98 58.2
Sopen03g040980 Solanum pennellii HOM05D000139 ORTHO05D000103 7.6e-21 104.0 98 58.2
PGSC0003DMG400022899 Solanum tuberosum HOM05D000139 ORTHO05D000103 9.9e-21 103.6 98 58.2
Peaxi162Scf00207g10149 Petunia axillaris HOM05D000139 ORTHO05D000103 1.3e-20 103.2 113 54.9
Solyc06g062990.3 Solanum lycopersicum HOM05D000139 ORTHO05D000103 1.7e-20 102.8 98 60.2
PGSC0003DMG400004893 Solanum tuberosum HOM05D000139 ORTHO05D000103 2.2e-20 102.4 98 60.2
Nitab4.5_0005153g0060 Nicotiana tabacum HOM05D000139 ORTHO05D000103 3.8e-20 101.7 101 58.4
Lsat_1_v5_gn_1_37860 Lactuca sativa HOM05D000139 ORTHO05D000103 1.1e-19 100.1 121 51.2
Cc04_g01100 Coffea canephora HOM05D000139 ORTHO05D000103 1.4e-19 99.8 97 59.8
Rhsim08G0240800 Rhododendron simsii HOM05D000139 ORTHO05D000103 1.9e-19 99.4 115 54.8
TAR624G0071 Trochodendron aralioides HOM05D000139 ORTHO05D000103 1.9e-19 99.4 114 51.8
TAR636G1434 Trochodendron aralioides HOM05D000139 ORTHO05D000103 2.4e-19 99.0 118 53.4
Manes.11G016900 Manihot esculenta HOM05D000139 ORTHO05D000103 3.2e-19 98.6 104 54.8
Nn8g38587 Nelumbo nucifera HOM05D000139 ORTHO05D000103 3.2e-19 98.6 115 53.9
Lalb_Chr10g0101371 Lupinus albus HOM05D000139 ORTHO05D000103 4.1e-19 98.2 90 61.1
Potri.003G068700 Populus trichocarpa HOM05D000139 ORTHO05D000103 5.4e-19 97.8 126 48.4
Ciclev10025154m.g Citrus clementina HOM05D000139 ORTHO05D000103 7.1e-19 97.4 117 55.6
Peaxi162Scf00038g01911 Petunia axillaris HOM05D000139 ORTHO05D000103 7.1e-19 97.4 95 57.9
Gohir.A10G055800 Gossypium hirsutum HOM05D000139 ORTHO05D000103 9.2e-19 97.1 115 51.3
Hma1.2p1_0229F.1_g096720 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 9.2e-19 97.1 110 55.5
Gohir.D10G057700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.2e-18 96.7 113 52.2
Gorai.011G061800 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.2e-18 96.7 113 52.2
Manes.04G147700 Manihot esculenta HOM05D000139 ORTHO05D000103 1.2e-18 96.7 104 53.8
Duzib192G0567 Durio zibethinus HOM05D000139 ORTHO05D000103 1.6e-18 96.3 108 54.6
Sabra03G0040200 Salix brachista HOM05D000139 ORTHO05D000103 1.6e-18 96.3 122 50.0
TAR005G0003 Trochodendron aralioides HOM05D000139 ORTHO05D020258 1.6e-18 96.3 117 53.0
TAR383G0455 Trochodendron aralioides HOM05D000139 ORTHO05D000103 1.6e-18 96.3 117 53.0
Gorai.009G145500 Gossypium raimondii HOM05D000139 ORTHO05D000103 2.7e-18 95.5 119 52.1
Hma1.2p1_2833F.1_g329250 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 2.7e-18 95.5 122 50.8
Sed0003184 Sechium edule HOM05D000139 ORTHO05D000103 2.7e-18 95.5 95 57.9
Sabra01G0126800 Salix brachista HOM05D000139 ORTHO05D000103 3.5e-18 95.1 116 49.1
PGR119G1783 Punica granatum HOM05D000139 ORTHO05D000103 6.0e-18 94.4 112 56.2
Thecc.06G123700 Theobroma cacao HOM05D000139 ORTHO05D000103 6.0e-18 94.4 108 53.7
Duzib235G1131 Durio zibethinus HOM05D000139 ORTHO05D000103 7.8e-18 94.0 110 52.7
Lsat_1_v5_gn_4_92560 Lactuca sativa HOM05D000139 ORTHO05D000103 7.8e-18 94.0 124 47.6
Lalb_Chr04g0253701 Lupinus albus HOM05D000139 ORTHO05D000103 7.8e-18 94.0 95 57.9
Potri.001G166400 Populus trichocarpa HOM05D000139 ORTHO05D000103 7.8e-18 94.0 114 49.1
CANSAT56G4412 Cannabis sativa HOM05D000139 ORTHO05D000103 1.0e-17 93.6 115 50.4
Gohir.D05G141400 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.0e-17 93.6 119 51.3
QL05p003853 Quercus lobata HOM05D000139 ORTHO05D000103 1.0e-17 93.6 107 50.5
Cfa003514 Carpinus fangiana HOM05D000139 ORTHO05D000103 1.3e-17 93.2 114 50.0
GSVIVG01016723001 Vitis vinifera HOM05D000139 ORTHO05D000103 1.3e-17 93.2 117 52.1
Atru.chr1.4069 Acer truncatum HOM05D000139 ORTHO05D000103 1.7e-17 92.8 117 51.3
CiPaw.02G134100 Carya illinoinensis HOM05D000139 ORTHO05D000103 2.3e-17 92.4 115 48.7
Lj3g0023732 Lotus japonicus HOM05D000139 ORTHO05D000103 2.3e-17 92.4 94 56.4
COL.COLO4_30788 Corchorus olitorius HOM05D000139 ORTHO05D000103 3.9e-17 91.7 113 50.4
PSO724G1234 Papaver somniferum HOM05D000139 ORTHO05D000103 3.9e-17 91.7 103 53.4
Sp1g40530 Schrenkiella parvula HOM05D000139 ORTHO05D000103 3.9e-17 91.7 117 47.9
vmacro15049 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 3.9e-17 91.7 117 52.1
MSTRG.22537 Avicennia marina HOM05D000139 ORTHO05D000103 5.1e-17 91.3 110 51.8
FAN14G3285 Fragaria x ananassa HOM05D000139 ORTHO05D000103 5.1e-17 91.3 88 59.1
PSO386G0142 Papaver somniferum HOM05D000139 ORTHO05D000103 5.1e-17 91.3 93 53.8
Phvul.010G127600 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 6.6e-17 90.9 82 57.3
VMungo0331G0518 Vigna mungo HOM05D000139 ORTHO05D000103 6.6e-17 90.9 82 57.3
DCAR_026421 Daucus carota HOM05D000139 ORTHO05D000103 8.7e-17 90.5 85 52.9
MD17G1164500 Malus domestica HOM05D000139 ORTHO05D000103 8.7e-17 90.5 109 54.1
Carub.0003s1370 Capsella rubella HOM05D000139 ORTHO05D000103 1.1e-16 90.1 120 45.0
Migut.I01102 Erythranthe guttata HOM05D000139 ORTHO05D000103 1.1e-16 90.1 105 49.5
TWI59G0334 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 1.1e-16 90.1 121 48.8
Cpa.g.sc25.144 Carica papaya HOM05D000139 ORTHO05D000103 1.5e-16 89.7 127 47.2
Gohir.A05G139200 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.5e-16 89.7 122 50.0
FvH4_6g35110 Fragaria vesca HOM05D000139 ORTHO05D000103 1.9e-16 89.4 88 58.0
FAN02G3961 Fragaria x ananassa HOM05D000139 ORTHO05D000103 1.9e-16 89.4 88 58.0
FAN09G4556 Fragaria x ananassa HOM05D000139 ORTHO05D000103 1.9e-16 89.4 88 58.0
TWI23G0495 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 1.9e-16 89.4 118 47.5
AT1G54090 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 2.5e-16 89.0 108 49.1
Ah.15g095190 Amaranthus hybridus HOM05D000139 ORTHO05D000103 5.6e-16 87.8 114 47.4
Psat4g167560 Pisum sativum HOM05D000139 ORTHO05D000103 5.6e-16 87.8 97 56.7
THA.LOC104815618 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 5.6e-16 87.8 114 45.6
A05p35350 Brassica napus HOM05D000139 ORTHO05D000103 7.3e-16 87.4 135 44.4
BraA05t22345Z Brassica rapa HOM05D000139 ORTHO05D000103 7.3e-16 87.4 135 44.4
DCAR_022669 Daucus carota HOM05D000139 ORTHO05D000103 7.3e-16 87.4 111 51.4
Prupe.2G175900 Prunus persica HOM05D000139 ORTHO05D020258 7.3e-16 87.4 104 51.0
EL10Ac7g16439 Beta vulgaris HOM05D000139 ORTHO05D000103 9.6e-16 87.0 116 45.7
Carub.0001s4332 Capsella rubella HOM05D000139 ORTHO05D000103 9.6e-16 87.0 113 47.8
FAN05G3346 Fragaria x ananassa HOM05D000139 ORTHO05D000103 9.6e-16 87.0 88 56.8
Medtr8g021330 Medicago truncatula HOM05D000139 ORTHO05D000103 9.6e-16 87.0 95 56.8
Prupe.3G038000 Prunus persica HOM05D000139 ORTHO05D000103 9.6e-16 87.0 108 53.7
RcHm_v2.0_Chr2g0146331 Rosa chinensis HOM05D000139 ORTHO05D000103 9.6e-16 87.0 110 51.8
Sp3g12350 Schrenkiella parvula HOM05D000139 ORTHO05D000103 9.6e-16 87.0 134 41.0
Glyma.07G041100 Glycine max HOM05D000139 ORTHO05D000103 1.2e-15 86.7 87 57.5
TPR.G16755 Trifolium pratense HOM05D000139 ORTHO05D000103 1.6e-15 86.3 99 54.5
MSTRG.10934 Avicennia marina HOM05D000139 ORTHO05D000103 2.1e-15 85.9 105 50.5
MELO3C022677.2 Cucumis melo HOM05D000139 ORTHO05D000103 2.1e-15 85.9 104 51.0
Glyma.16G009800 Glycine max HOM05D000139 ORTHO05D000103 2.1e-15 85.9 86 57.0
Lsat_1_v5_gn_5_135860 Lactuca sativa HOM05D000139 ORTHO05D000103 2.1e-15 85.9 101 53.5
Aa31LG10G1310 Aethionema arabicum HOM05D000139 ORTHO05D000103 2.8e-15 85.5 128 42.2
BcaB04g17030 Brassica carinata HOM05D000139 ORTHO05D000103 2.8e-15 85.5 113 46.0
AUR62009917 Chenopodium quinoa HOM05D000139 ORTHO05D000103 2.8e-15 85.5 94 47.9
ClCG07G014500 Citrullus lanatus HOM05D000139 ORTHO05D000103 2.8e-15 85.5 104 51.9
Duzib160G0694 Durio zibethinus HOM05D000139 ORTHO05D000103 2.8e-15 85.5 119 46.2
HanXRQChr12g0360271 Helianthus annuus HOM05D000139 ORTHO05D000103 2.8e-15 85.5 116 49.1
C05p53540 Brassica napus HOM05D000139 ORTHO05D000103 3.6e-15 85.1 133 45.1
BolC5t34031H Brassica oleracea HOM05D000139 ORTHO05D000103 3.6e-15 85.1 133 45.1
C03p91960 Brassica napus HOM05D000139 ORTHO05D000103 4.7e-15 84.7 110 46.4
AUR62001448 Chenopodium quinoa HOM05D000139 ORTHO05D000103 4.7e-15 84.7 95 47.4
CsaV3_3G030800 Cucumis sativus L. HOM05D000139 ORTHO05D000103 4.7e-15 84.7 104 49.0
Aqoxy7G01014 Aquilegia oxysepala HOM05D000139 ORTHO05D000103 6.2e-15 84.3 98 52.0
AL3G26320 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 6.2e-15 84.3 121 43.8
Sed0014349 Sechium edule HOM05D000139 ORTHO05D000103 6.2e-15 84.3 92 53.3
Sc12g0010750 Simmondsia chinensis HOM05D000139 ORTHO05D000103 6.2e-15 84.3 110 48.2
A08p01240 Brassica napus HOM05D000139 ORTHO05D000103 8.1e-15 84.0 108 46.3
BolC3t21516H Brassica oleracea HOM05D000139 ORTHO05D000103 8.1e-15 84.0 110 46.4
BraA08t32175Z Brassica rapa HOM05D000139 ORTHO05D000103 8.1e-15 84.0 108 46.3
AL1G62790 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 1.1e-14 83.6 113 49.6
AT3G14090 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 1.1e-14 83.6 117 44.4
BcaC01g01432 Brassica carinata HOM05D000139 ORTHO05D000103 1.1e-14 83.6 110 46.4
SGA_v2.0_scaffold71G23888 Striga asiatica HOM05D000139 ORTHO05D000103 1.4e-14 83.2 97 49.5
CARHR065420 Cardamine hirsuta HOM05D000139 ORTHO05D000103 1.8e-14 82.8 99 48.5
CARHR088950 Cardamine hirsuta HOM05D000139 ORTHO05D000103 1.8e-14 82.8 122 41.0
CARHR044420 Cardamine hirsuta HOM05D000139 ORTHO05D000103 2.4e-14 82.4 123 43.1
SGA_v2.0_scaffold122G33321 Striga asiatica HOM05D000139 ORTHO05D000103 4.0e-14 81.6 100 45.0
Ca_23404_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 6.9e-14 80.9 92 53.3
ECA234G4173 Erigeron canadensis HOM05D000139 ORTHO05D000103 1.2e-13 80.1 98 51.0
Thhalv10019854m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 2.0e-13 79.3 99 48.5
MBI13_g00697_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 2.0e-13 79.3 85 52.9
CDE05G3169 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 2.6e-13 79.0 100 47.0
AT1G72470 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 3.4e-13 78.6 85 51.8
Rhsim12G0211300 Rhododendron simsii HOM05D000139 ORTHO05D000103 3.4e-13 78.6 119 44.5
Aa31LG8G1320 Aethionema arabicum HOM05D000139 ORTHO05D000103 4.4e-13 78.2 124 39.5
BcaC08g45707 Brassica carinata HOM05D000139 ORTHO05D000103 4.4e-13 78.2 85 50.6
A07p30210 Brassica napus HOM05D000139 ORTHO05D000103 4.4e-13 78.2 85 50.6
C06p34960 Brassica napus HOM05D000139 ORTHO05D000103 4.4e-13 78.2 85 50.6
BolC6t38595H Brassica oleracea HOM05D000139 ORTHO05D000103 4.4e-13 78.2 85 50.6
BraA07t30658Z Brassica rapa HOM05D000139 ORTHO05D000103 4.4e-13 78.2 85 50.6
Carub.0002s1932 Capsella rubella HOM05D000139 ORTHO05D000103 5.8e-13 77.8 85 52.9
CDE11G0138 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.8e-13 77.8 98 46.9
BcaB03g15669 Brassica carinata HOM05D000139 ORTHO05D000103 7.6e-13 77.4 86 50.0
Sp5g27550 Schrenkiella parvula HOM05D000139 ORTHO05D000103 9.9e-13 77.0 85 50.6
Aa31LG4G2800 Aethionema arabicum HOM05D000139 ORTHO05D000103 2.2e-12 75.9 85 49.4
THA.LOC104812259 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 2.2e-12 75.9 89 49.4
Thhalv10011317m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 2.9e-12 75.5 123 43.1
Rhsim12G0211400 Rhododendron simsii HOM05D000139 ORTHO05D000103 2.9e-12 75.5 107 49.5
Rhsim12G0211500 Rhododendron simsii HOM05D000139 ORTHO05D000103 6.4e-12 74.3 109 46.8
Dinv37849 Davidia involucrata HOM05D000139 ORTHO05D000103 2.4e-11 72.4 84 58.3
AL2G32160 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 3.2e-11 72.0 85 48.2
BcaC03g15104 Brassica carinata HOM05D000139 ORTHO05D000103 7.1e-11 70.9 98 41.8
BolC2t08735H Brassica oleracea HOM05D000139 ORTHO05D000103 7.1e-11 70.9 98 41.8
Dinv30713 Davidia involucrata HOM05D000139 ORTHO05D000103 4.6e-10 68.2 112 45.5
unitig_32.g11015 Utricularia gibba HOM05D000139 ORTHO05D000103 7.8e-10 67.4 98 42.9
vmacro15159 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 7.8e-10 67.4 109 45.0
Haze_16061 Corylus avellana HOM05D000139 ORTHO05D000103 1.0e-09 67.0 71 53.5
Dinv12044 Davidia involucrata HOM05D000139 ORTHO05D020258 1.3e-09 66.6 83 53.0
Dinv15437 Davidia involucrata HOM05D000139 ORTHO05D000103 2.3e-09 65.9 116 47.4
Lj9P534T43 Lonicera japonica HOM05D000139 ORTHO05D000103 3.0e-09 65.5 75 56.0
HanXRQChr04g0094381 Helianthus annuus HOM05D000139 ORTHO05D000103 3.9e-09 65.1 115 39.1
HanXRQChr10g0312091 Helianthus annuus HOM05D000139 ORTHO05D000103 6.6e-09 64.3 84 52.4
Dinv15434 Davidia involucrata HOM05D000139 ORTHO05D000103 1.5e-08 63.2 119 46.2
Dinv15440 Davidia involucrata HOM05D000139 ORTHO05D000103 3.3e-08 62.0 117 44.4
Oeu006736.1 Olea europaea HOM05D000139 ORTHO05D000103 3.3e-08 62.0 74 47.3
Oeu005582.1 Olea europaea HOM05D000139 ORTHO05D000103 7.3e-08 60.8 81 44.4
Dinv22206 Davidia involucrata HOM05D000139 ORTHO05D000103 9.6e-08 60.5 103 44.7
FAN25G0119 Fragaria x ananassa HOM05D000139 ORTHO05D020258 1.3e-07 60.1 41 70.7
Dinv15441 Davidia involucrata HOM05D000139 ORTHO05D000103 3.6e-07 58.5 114 43.9
vmacro22026 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 6.2e-07 57.8 119 39.5
Dinv00912 Davidia involucrata HOM05D000139 ORTHO05D000103 8.1e-07 57.4 96 46.9
Dinv15439 Davidia involucrata HOM05D000139 ORTHO05D000103 8.1e-07 57.4 96 46.9
ATR0006G041 Amborella trichopoda HOM05D000139 ORTHO05D000103 1.1e-06 57.0 81 44.4
Dinv05151 Davidia involucrata HOM05D012673 ORTHO05D000277 1.8e-06 56.2 110 43.6
vmacro22025 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 3.1e-06 55.5 87 46.0
Cfa018829 Carpinus fangiana HOM05D000139 ORTHO05D000103 4.0e-06 55.1 83 37.3
Dinv23139 Davidia involucrata HOM05D000139 ORTHO05D000103 4.0e-06 55.1 80 45.0
PSO421G0743 Papaver somniferum HOM05D000139 ORTHO05D000103 4.0e-06 55.1 119 38.7
Dinv04730 Davidia involucrata HOM05D000139 ORTHO05D020258 5.3e-06 54.7 84 42.9
Zm00001eb040510 Zea mays HOM05D000139 ORTHO05D000103 5.3e-06 54.7 116 37.1
Haze_07223 Corylus avellana HOM05D000139 ORTHO05D000103 6.9e-06 54.3 83 37.3


User provided reference genes

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