Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 7.3e-95 350.9 225 100.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 3.2e-50 202.6 226 65.0
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.5e-50 201.8 227 65.2
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.8e-40 170.2 226 56.6
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 3.0e-40 169.5 226 58.8
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.9e-39 166.8 234 55.1
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 6.3e-38 161.8 205 55.1
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 8.2e-38 161.4 212 59.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 5.3e-37 158.7 231 53.7
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.6e-36 156.4 199 54.8
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.2e-35 153.3 213 57.3
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 9.3e-34 147.9 218 57.3
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-33 147.5 215 54.4
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.1e-33 146.7 198 60.6
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 7.9e-33 144.8 229 49.3
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 5.1e-32 142.1 206 59.7
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 6.7e-32 141.7 222 50.0
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.1e-31 141.0 217 55.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.2e-30 136.7 204 50.0
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 2.8e-30 136.3 228 52.2
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.7e-30 136.0 240 47.5
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.7e-30 136.0 226 52.7
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 4.8e-30 135.6 224 45.5
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 6.3e-30 135.2 216 49.1
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 6.3e-30 135.2 225 54.2
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.4e-29 133.3 216 50.9
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 3.1e-29 132.9 241 46.1
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 4.1e-29 132.5 199 59.3
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 4.1e-29 132.5 223 52.0
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 4.1e-29 132.5 226 46.5
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.2e-28 131.0 225 50.7
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.5e-28 130.6 210 53.8
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 2.0e-28 130.2 239 51.5
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 2.6e-28 129.8 261 51.0
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.6e-28 129.8 225 47.6
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 3.4e-28 129.4 212 49.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 4.5e-28 129.0 228 43.0
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.5e-28 129.0 209 48.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-27 127.5 226 51.3
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 3.2e-26 122.9 225 48.9
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 5.5e-26 122.1 223 44.4
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 5.5e-26 122.1 220 49.5
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 7.2e-26 121.7 200 53.5
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.2e-25 120.9 212 51.9
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 6.1e-25 118.6 234 44.4
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 6.1e-25 118.6 224 45.5
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 6.1e-25 118.6 219 48.4
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 7.9e-25 118.2 234 53.0
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 7.9e-25 118.2 226 45.1
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.0e-24 117.9 209 49.8
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.4e-24 117.5 191 56.5
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.8e-24 117.1 219 47.0
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.3e-24 116.7 253 41.9
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 2.3e-24 116.7 236 44.5
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 5.1e-24 115.5 237 46.8
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 2.5e-23 113.2 242 46.7
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 4.8e-22 109.0 216 54.2
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.1e-21 107.8 208 49.0
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.4e-21 107.5 220 40.0
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.5e-20 104.0 220 44.5
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.0e-20 103.6 228 51.3
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 5.9e-20 102.1 223 44.8
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.0e-19 101.3 198 49.5
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.7e-19 100.5 225 46.7
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.9e-19 99.8 225 39.6
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 6.5e-19 98.6 222 45.5
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 8.5e-19 98.2 130 53.1
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 4.2e-18 95.9 211 50.2
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.6e-17 94.0 241 43.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.6e-17 94.0 208 46.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.7e-17 93.2 226 45.1
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.0e-16 91.3 218 46.8
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 3.0e-16 89.7 215 40.0
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.0e-16 89.7 215 40.0
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.0e-16 89.7 105 60.0
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 3.9e-16 89.4 239 42.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.5e-15 87.4 226 40.3
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 1.5e-15 87.4 226 51.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.3e-15 86.3 225 38.2
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.3e-14 84.3 225 37.3
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.8e-13 80.5 117 49.6
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.4e-13 80.1 235 39.6
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 7.0e-13 78.6 222 38.3
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 9.1e-13 78.2 222 35.6
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.2e-12 77.8 225 39.6
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.6e-12 77.4 228 40.8
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 4.5e-12 75.9 95 54.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 4.5e-12 75.9 37 94.6
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.7e-11 73.9 225 39.1
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.7e-11 73.9 229 42.4
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 6.5e-11 72.0 213 36.2
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.5e-10 70.9 211 36.5
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.5e-10 70.9 212 37.3
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.5e-10 70.9 243 39.1
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.2e-10 69.7 66 72.7
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 3.6e-09 66.2 82 62.2
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 4.7e-09 65.9 214 40.2
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 8.0e-09 65.1 131 46.6
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 2.3e-08 63.5 235 37.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 6.7e-08 62.0 245 38.8
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.5e-07 60.8 247 39.7
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.4e-07 59.3 36 75.0
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 7.5e-07 58.5 149 38.3
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 9.7e-07 58.2 82 53.7
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 1.3e-06 57.8 223 36.8
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.2e-06 57.0 233 31.3
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.8e-06 55.8 199 34.2
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 4.8e-06 55.8 234 38.9


User provided reference genes

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