Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.9e-189 665.6 319 100.0
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 1.2e-143 513.5 286 81.8
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.3e-142 510.0 282 83.3
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.3e-142 510.0 283 83.4
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.0e-142 508.8 282 82.3
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 3.9e-142 508.4 283 80.2
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 5.0e-142 508.1 286 83.6
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.1e-141 506.9 283 82.0
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.5e-141 506.5 283 79.9
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.5e-141 506.5 283 80.2
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.5e-141 505.8 286 83.2
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.5e-141 505.8 282 82.3
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.6e-140 503.1 283 79.9
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.8e-140 502.3 288 78.1
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 4.7e-140 501.5 286 79.7
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.4e-139 500.0 283 80.9
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 6.8e-139 497.7 280 82.1
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 6.8e-139 497.7 286 79.4
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.2e-138 496.9 283 80.2
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.5e-138 496.5 286 78.7
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 4.4e-138 495.0 286 78.7
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 5.8e-138 494.6 290 80.7
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 3.2e-136 488.8 283 77.4
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 4.1e-136 488.4 283 77.7
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 5.4e-136 488.0 286 78.0
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 5.4e-136 488.0 283 78.4
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.6e-135 486.5 283 78.8
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 4.6e-135 485.0 283 77.7
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 7.8e-135 484.2 289 76.8
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.3e-134 482.6 283 77.7
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 3.0e-134 482.3 290 75.5
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 3.9e-134 481.9 290 75.9
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 5.1e-134 481.5 290 74.8
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 6.6e-134 481.1 286 76.6
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.5e-133 479.9 290 75.5
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.9e-133 479.6 290 73.8
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.5e-133 479.2 290 75.5
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 2.5e-133 479.2 283 77.0
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 2.5e-133 479.2 283 76.0
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 5.6e-133 478.0 283 77.0
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 7.3e-133 477.6 290 75.2
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 9.5e-133 477.2 290 74.8
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 1.6e-132 476.5 290 73.8
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.6e-132 476.5 283 75.6
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 3.6e-132 475.3 283 76.7
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 4.7e-132 474.9 286 74.5
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.4e-131 473.4 286 74.5
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.4e-131 473.4 283 75.6
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.4e-131 473.4 283 75.6
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.4e-131 473.4 286 76.6
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.3e-131 472.6 283 75.6
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 8.9e-131 470.7 283 73.9
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 8.9e-131 470.7 286 75.2
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 3.4e-130 468.8 286 74.5
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 3.4e-130 468.8 283 74.9
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 4.4e-130 468.4 283 75.3
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 7.6e-130 467.6 286 75.9
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 7.6e-130 467.6 283 74.9
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.7e-129 466.5 312 70.2
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.2e-129 466.1 283 73.1
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.7e-129 465.3 252 84.9
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 6.4e-129 464.5 287 72.5
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 1.4e-128 463.4 283 71.7
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 1.4e-128 463.4 284 72.9
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 1.4e-128 463.4 284 72.9
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.4e-128 463.4 284 72.9
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 2.4e-128 462.6 284 72.9
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 2.4e-128 462.6 284 72.9
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 2.4e-128 462.6 283 74.9
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.2e-128 462.2 300 72.0
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 3.2e-128 462.2 283 74.6
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 1.6e-127 459.9 283 71.0
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 2.1e-127 459.5 259 82.2
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 2.7e-127 459.1 284 72.2
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.7e-127 459.1 286 77.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 3.5e-127 458.8 283 70.7
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.5e-127 458.8 283 71.0
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 3.5e-127 458.8 283 73.1
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 3.5e-127 458.8 283 73.1
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.6e-127 458.4 283 72.8
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.3e-126 456.8 296 73.3
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.7e-126 456.4 283 71.4
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.7e-126 456.4 284 71.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.7e-126 456.4 284 71.8
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 3.9e-126 455.3 324 66.4
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.5e-125 453.4 283 70.7
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 4.7e-124 448.4 259 78.8
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 4.7e-124 448.4 283 71.4
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 8.9e-123 444.1 303 69.3
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.2e-122 443.7 341 62.2
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.3e-118 430.3 283 68.2
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 7.3e-117 424.5 312 66.0
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.2e-114 417.2 283 69.6
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 5.8e-114 414.8 241 77.2
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 5.8e-114 414.8 286 64.7
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 6.4e-113 411.4 296 69.9
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.6e-111 406.8 288 67.4
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-109 400.6 334 59.6
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.4e-104 382.9 199 87.4
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 4.6e-103 378.6 285 58.6
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 5.1e-102 375.2 228 78.1
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 5.1e-102 375.2 295 64.1
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 9.6e-101 370.9 286 61.9
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 9.6e-101 370.9 261 66.3
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 4.8e-100 368.6 291 58.1
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.0e-99 365.5 312 58.3
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 9.0e-99 364.4 291 58.8
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 2.2e-97 359.8 311 54.7
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.3e-92 344.0 176 88.1
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.3e-92 344.0 176 88.1
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.2e-90 337.4 177 85.9
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 6.5e-89 331.6 176 85.2
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 3.5e-87 325.9 283 56.9
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 7.9e-87 324.7 283 57.2
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 4.5e-82 308.9 318 48.1
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 5.2e-62 242.3 190 61.1
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 9.7e-61 238.0 174 70.1
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 8.5e-57 224.9 113 85.8
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 2.5e-56 223.4 299 39.8
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 5.5e-56 222.2 330 40.0
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.2e-55 221.1 327 43.7
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 6.8e-54 215.3 260 44.2
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.2e-50 204.5 128 74.2
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.2e-47 194.5 261 36.8
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 4.0e-46 189.5 241 45.2
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.5e-45 187.6 294 39.1
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 9.2e-43 178.3 230 45.7
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.3e-36 157.9 85 77.6
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 1.2e-31 141.4 106 67.9
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.0e-30 138.3 125 53.6
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 4.3e-24 116.3 91 63.7
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.0e-21 107.5 99 57.6
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 9.8e-21 105.1 267 33.3
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.4e-19 101.3 88 53.4
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.4e-19 101.3 89 57.3
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.2e-13 81.6 41 78.0
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.1e-11 73.2 33 97.0
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 3.6e-07 60.1 62 41.9


User provided reference genes

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