Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 0.0e+00 1226.1 660 100.0
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 4.7e-251 871.3 720 70.1
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 8.0e-243 844.0 717 68.6
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 4.1e-239 831.6 719 68.3
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 9.2e-239 830.5 726 66.8
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 2.3e-234 815.8 722 66.5
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 3.1e-234 815.5 724 65.9
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 3.5e-230 802.0 717 66.4
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 1.9e-228 796.2 724 64.8
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 3.6e-227 792.0 723 64.6
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.3e-226 789.3 722 64.0
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 9.8e-225 783.9 718 62.7
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 4.9e-224 781.6 728 63.5
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 6.4e-224 781.2 724 63.4
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.1e-222 776.2 740 62.2
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 1.0e-221 773.9 722 62.9
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 3.9e-221 771.9 722 63.0
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 2.5e-220 769.2 719 63.1
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.5e-220 769.2 720 63.5
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 5.6e-220 768.1 811 58.7
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 5.2e-218 761.5 719 62.9
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 4.4e-217 758.4 720 64.0
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 4.9e-216 755.0 717 63.0
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 9.2e-215 750.7 723 61.7
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 4.6e-214 748.4 729 60.8
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 6.6e-213 744.6 722 61.2
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 4.3e-212 741.9 719 60.9
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 7.3e-212 741.1 707 62.2
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.6e-211 740.0 718 62.0
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 2.0e-209 733.0 729 59.9
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 3.4e-209 732.3 722 59.6
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 9.9e-209 730.7 723 60.4
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 1.4e-207 726.9 718 61.7
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 5.4e-207 724.9 725 61.1
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 4.6e-206 721.8 724 60.4
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 7.8e-206 721.1 726 60.9
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 2.3e-205 719.5 721 59.8
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 5.1e-205 718.4 723 59.8
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 5.1e-205 718.4 726 60.2
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 6.6e-205 718.0 692 62.0
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 1.9e-204 716.5 723 59.5
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.5e-204 716.1 726 60.3
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 9.6e-204 714.1 721 59.5
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 6.9e-202 708.0 671 62.9
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 9.0e-202 707.6 722 58.7
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 2.6e-201 706.1 716 60.9
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 2.6e-201 706.1 717 60.5
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 7.6e-201 704.5 716 58.2
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 4.9e-200 701.8 726 57.0
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 6.4e-200 701.4 806 56.5
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 4.2e-199 698.7 721 58.7
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 1.2e-198 697.2 728 58.8
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 1.2e-198 697.2 730 58.8
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.2e-198 697.2 721 59.4
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.0e-197 694.1 722 57.9
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 6.7e-197 691.4 728 58.4
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 1.5e-196 690.3 712 59.4
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 4.3e-196 688.7 726 56.9
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 1.6e-195 686.8 716 58.0
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 4.8e-195 685.3 727 56.4
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 2.4e-194 682.9 716 57.0
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 4.0e-194 682.2 725 56.3
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 2.6e-193 679.5 728 55.4
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 3.4e-193 679.1 723 56.6
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 6.4e-192 674.9 699 58.1
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.2e-190 670.6 727 55.2
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 4.6e-190 668.7 723 56.2
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 6.0e-190 668.3 722 55.7
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 5.1e-189 665.2 721 57.7
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.5e-188 663.7 725 56.6
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 4.5e-185 652.1 723 55.2
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 6.5e-184 648.3 790 53.2
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 4.2e-183 645.6 722 54.8
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 7.1e-183 644.8 677 57.8
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 7.1e-183 644.8 738 53.7
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.6e-179 633.6 684 57.6
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 2.1e-179 633.3 722 54.2
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.4e-178 630.6 723 56.2
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 2.4e-178 629.8 723 54.1
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 2.4e-178 629.8 723 54.1
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 9.3e-175 617.8 721 53.3
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.0e-173 612.8 724 53.5
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 8.2e-171 604.7 723 54.1
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.9e-167 593.6 655 55.1
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 3.7e-155 552.7 727 48.8
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 6.3e-155 552.0 722 49.3
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 4.5e-153 545.8 719 48.7
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 4.2e-151 539.3 774 46.8
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 6.7e-149 531.9 718 47.8
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 1.3e-147 527.7 644 52.8
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 3.1e-146 523.1 452 69.7
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 4.0e-141 506.1 451 67.0
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 2.6e-140 503.4 625 53.4
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.9e-136 490.0 496 58.7
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 3.3e-119 433.3 398 64.3
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 2.1e-118 430.6 521 52.4
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 4.6e-113 412.9 547 51.6
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 9.9e-92 342.0 337 60.8
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 2.9e-91 340.5 335 60.3
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 3.2e-90 337.0 472 48.3
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 1.9e-87 327.8 528 45.8
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 3.1e-85 320.5 272 67.6
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 2.9e-83 313.9 397 52.1
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 7.6e-76 289.3 274 60.6
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 1.1e-71 275.4 244 65.2
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.6e-65 255.0 729 30.0
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 3.0e-64 250.8 662 31.0
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.1e-63 248.8 277 56.3
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 6.5e-59 233.0 734 27.1
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 8.8e-56 222.6 642 34.9
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 3.8e-43 180.6 709 25.8
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.1e-37 162.5 724 24.6
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 1.1e-26 125.9 198 47.5
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.1e-25 120.2 109 58.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.7e-22 110.9 108 59.3
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 5.4e-21 107.1 99 64.6
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 9.1e-21 106.3 124 48.4
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 5.5e-18 97.1 119 55.5
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 4.7e-17 94.0 104 51.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.7e-15 87.0 55 83.6
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 7.5e-15 86.7 164 37.2
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.2e-14 85.1 54 72.2
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 1.1e-13 82.8 70 65.7
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 1.1e-10 72.8 55 67.3
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.5e-10 72.4 142 40.1
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 4.4e-07 60.8 42 64.3
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 1.3e-06 59.3 98 36.7
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.9e-06 58.2 109 39.4
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 3.7e-06 57.8 45 66.7


User provided reference genes

Program Settings