Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 4.4e-141 504.6 249 100.0
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.2e-125 453.4 243 90.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.8e-124 448.0 243 90.9
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 5.3e-123 444.5 242 88.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 5.3e-123 444.5 244 88.9
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 7.0e-123 444.1 243 87.2
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.7e-122 442.2 243 88.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.7e-122 442.2 243 88.9
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 7.7e-122 440.7 243 87.2
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.0e-121 440.3 242 88.8
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.0e-121 440.3 242 88.0
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.3e-121 439.9 243 87.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.2e-121 439.1 243 87.7
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.9e-121 438.7 243 85.6
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 3.8e-121 438.3 243 85.6
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 6.5e-121 437.6 243 86.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 8.5e-121 437.2 242 85.5
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 8.5e-121 437.2 243 86.4
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.9e-120 436.0 243 85.6
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.9e-120 436.0 243 86.8
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.5e-120 435.6 244 86.1
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.5e-120 435.6 243 86.4
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 4.2e-120 434.9 240 85.8
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 5.5e-120 434.5 243 85.6
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 7.2e-120 434.1 247 85.4
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.2e-119 433.3 243 84.8
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.2e-119 433.3 243 85.6
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.1e-119 432.6 243 85.6
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.1e-119 432.6 243 85.6
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.1e-119 432.6 243 84.8
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.7e-119 432.2 244 85.2
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 4.7e-119 431.4 242 84.7
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 6.1e-119 431.0 243 85.2
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.0e-119 430.6 242 85.5
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 8.0e-119 430.6 243 84.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 8.0e-119 430.6 243 84.0
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.4e-118 429.9 243 86.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.4e-118 429.9 243 84.4
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.4e-118 429.9 243 84.4
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 2.3e-118 429.1 243 84.8
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.0e-118 428.3 243 83.5
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 6.8e-118 427.6 244 84.0
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.2e-117 426.8 243 84.4
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.5e-117 426.4 242 84.7
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.0e-117 426.0 242 83.5
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.6e-117 425.6 242 83.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 5.7e-117 424.5 243 83.5
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.7e-116 422.9 243 82.7
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.2e-116 422.5 247 82.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 6.3e-116 421.0 243 83.1
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 8.3e-116 420.6 245 82.4
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.1e-115 420.2 242 83.1
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.1e-115 420.2 243 82.3
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.8e-115 419.5 243 81.9
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.4e-115 419.1 229 86.0
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.1e-115 418.7 256 80.1
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 9.1e-115 417.2 243 80.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-114 416.8 243 82.7
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.0e-114 416.0 242 82.6
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.0e-114 416.0 243 80.7
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.7e-114 415.6 243 81.5
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.5e-114 415.2 243 81.5
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.5e-114 414.8 242 81.4
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 5.9e-114 414.5 242 82.2
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 5.9e-114 414.5 243 80.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 7.7e-114 414.1 243 80.7
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 7.7e-114 414.1 243 81.9
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.0e-113 413.7 222 89.2
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.3e-113 413.3 237 83.1
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.3e-113 413.3 242 81.4
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.3e-113 413.3 243 80.2
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-113 412.9 256 79.3
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.7e-113 412.9 240 82.1
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.9e-113 412.1 242 80.6
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.9e-113 412.1 243 79.8
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.8e-113 411.8 242 82.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.8e-113 411.8 243 79.4
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 3.8e-113 411.8 233 85.8
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 6.5e-113 411.0 244 80.7
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 6.5e-113 411.0 243 79.4
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 6.5e-113 411.0 243 79.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.5e-112 409.1 243 80.2
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 3.2e-112 408.7 243 79.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 4.2e-112 408.3 294 71.4
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 5.5e-112 407.9 243 82.7
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 3.6e-111 405.2 243 80.2
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 8.0e-111 404.1 243 79.0
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 8.0e-111 404.1 243 79.0
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 8.0e-111 404.1 285 70.2
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 6.8e-110 401.0 235 84.3
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 6.8e-110 401.0 235 84.3
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.5e-109 399.8 243 76.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 5.7e-109 397.9 235 80.0
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.1e-107 393.7 244 75.0
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 5.4e-107 391.3 242 76.9
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.2e-106 390.2 243 80.2
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 4.5e-106 388.3 243 74.9
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.3e-105 386.0 243 76.1
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 3.3e-104 382.1 230 81.7
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 6.4e-100 367.9 246 70.7
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.7e-98 362.5 245 69.4
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 4.6e-98 361.7 250 69.2
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 3.3e-96 355.5 243 73.3
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 7.5e-93 344.4 235 69.8
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 6.0e-90 334.7 196 81.1
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 7.1e-83 311.2 223 66.4
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 9.2e-83 310.8 235 70.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.1e-78 295.8 224 67.4
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.7e-76 290.0 239 61.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.4e-75 287.0 245 61.2
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.7e-74 282.7 244 63.1
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.3e-68 263.8 188 67.6
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 2.2e-68 263.1 149 81.2
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 9.3e-67 257.7 136 90.4
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.3e-65 253.8 134 86.6
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 5.3e-62 241.9 247 51.0
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.6e-61 239.6 235 52.3
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 9.3e-59 231.1 130 82.3
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 2.0e-53 213.4 182 55.5
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 9.3e-43 177.9 132 69.7
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-34 150.6 162 49.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 3.0e-33 146.4 107 68.2
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 4.5e-29 132.5 90 70.0
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.3e-23 114.4 73 76.7
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 5.3e-22 109.0 81 64.2
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 3.6e-18 96.3 61 75.4
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 2.2e-15 87.0 199 30.7
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.2e-10 71.2 126 42.9
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.1e-10 70.5 43 83.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 6.1e-10 68.9 43 81.4
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 6.1e-10 68.9 43 81.4
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 4.4e-08 62.8 48 66.7
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 5.7e-08 62.4 163 30.7
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 5.7e-08 62.4 164 29.3
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.5e-08 62.0 36 86.1
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.5e-08 62.0 36 86.1
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.7e-08 61.6 45 73.3
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.2e-07 60.5 48 64.6
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.8e-07 60.1 36 83.3
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 3.7e-07 59.7 51 64.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 8.2e-07 58.5 114 40.4
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 8.2e-07 58.5 164 28.0
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 4.1e-06 56.2 57 56.1


User provided reference genes

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