Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 0.0e+00 1865.1 933 100.0
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1286.9 1048 65.9
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1261.1 1045 64.2
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1260.7 1023 65.0
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1256.5 1060 63.4
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 1247.3 1045 65.1
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1244.2 1062 63.9
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1242.6 1044 63.6
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 1238.0 1037 64.0
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1235.7 1044 63.3
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1231.9 1045 63.3
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1231.1 1060 62.3
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 0.0e+00 1228.0 1047 62.7
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1228.0 1047 63.1
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1227.6 1047 62.5
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1227.6 1047 62.5
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1220.3 1047 62.6
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1220.3 1047 62.6
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1218.4 1044 62.6
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1217.6 1047 62.5
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1217.2 1045 63.3
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1216.1 1047 62.6
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 1209.9 1045 62.1
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1209.9 1047 62.8
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1209.1 1044 61.5
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1208.4 1047 62.4
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1208.4 1141 58.9
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 1205.7 1046 61.4
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1203.7 1046 61.9
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1203.3 1021 62.4
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1202.2 1045 61.6
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1201.4 1046 62.0
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1199.9 1048 62.1
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1198.3 1052 61.4
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 1197.6 1044 61.3
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 1196.4 1025 62.7
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1194.1 1044 61.8
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1192.6 1157 57.6
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1185.2 1132 57.9
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1184.1 1078 60.0
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1182.9 1042 60.8
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 1182.9 1041 61.4
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 1170.6 1025 61.4
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1170.2 1032 60.9
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1166.4 1042 60.3
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1163.3 1046 60.9
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1162.5 1078 58.7
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 1162.5 1050 59.7
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 1154.4 1045 59.4
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1151.3 1045 60.0
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1149.0 1024 60.4
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1146.0 1044 59.6
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 1146.0 1045 59.8
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 1145.6 1045 59.5
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 1144.8 1047 59.4
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1144.4 1045 59.4
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 1142.5 1046 59.3
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 1141.7 1047 59.1
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 1140.6 1045 59.3
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 1136.3 1051 58.6
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1134.0 1047 59.3
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1134.0 1012 60.8
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1129.4 1050 58.6
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1125.9 1048 58.8
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1125.2 1070 57.7
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1124.4 1053 58.4
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1117.1 1043 58.0
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1114.4 1057 58.2
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1113.6 1062 57.4
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1112.8 1051 57.8
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1112.1 1031 58.9
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1112.1 1062 57.4
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1109.0 1072 56.6
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1108.2 1063 57.2
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1107.0 1044 57.6
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1102.8 1074 56.7
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1099.3 1052 57.8
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 0.0e+00 1096.3 1075 56.7
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 1092.8 1044 57.0
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1091.3 1047 57.8
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1090.1 1052 57.6
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 1085.5 1046 57.8
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1084.3 1045 55.6
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1083.6 1063 55.0
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1082.8 975 60.0
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1075.5 835 69.1
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 3.2e-311 1071.6 1043 57.0
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 2.0e-308 1062.4 1059 55.3
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 4.5e-308 1061.2 1047 55.6
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 2.2e-302 1042.3 995 57.9
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 9.1e-301 1036.9 1030 55.0
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 1.4e-288 996.5 1046 53.5
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 4.0e-288 995.0 882 60.4
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 3.5e-284 981.9 1046 52.6
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.0e-283 980.3 1006 54.8
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 3.9e-283 978.4 1045 52.4
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 3.7e-278 961.8 1015 53.7
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 2.2e-270 936.0 979 54.6
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 1.8e-264 916.4 905 56.7
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 1.9e-258 896.3 996 51.0
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 1.6e-228 797.0 1056 44.2
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 1.8e-224 783.5 1069 44.2
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 2.5e-221 773.1 720 59.0
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 2.6e-215 753.1 1084 43.2
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 3.4e-215 752.7 689 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 6.7e-211 738.4 1048 42.6
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 1.2e-196 691.0 617 60.9
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 6.8e-187 658.7 582 61.7
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 1.4e-179 634.4 1145 37.0
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 3.5e-175 619.8 542 60.9
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 2.8e-164 583.6 705 48.4
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 2.4e-123 447.6 591 46.0
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 1.1e-120 438.7 368 61.7
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 3.7e-116 423.7 595 44.5
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 1.9e-109 401.4 1059 31.3
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 4.3e-109 400.2 328 63.7
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 4.6e-103 380.2 329 59.3
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.4e-99 368.6 292 66.1
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 6.7e-94 349.7 291 62.9
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.1e-91 342.4 389 48.3
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 2.5e-88 331.3 258 64.7
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 3.2e-88 330.9 237 68.8
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 7.2e-88 329.7 249 66.7
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.9e-80 305.1 249 61.8
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 5.5e-80 303.5 275 53.8
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.7e-76 292.0 733 29.7
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 7.0e-75 286.6 276 55.1
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 1.7e-73 282.0 276 55.4
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 1.2e-66 259.2 251 57.8
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 5.0e-65 253.8 260 56.5
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 1.2e-53 216.1 573 29.3
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 1.2e-50 206.1 167 62.3
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 2.3e-46 191.8 152 63.8
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 2.3e-46 191.8 152 63.8
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 3.3e-40 171.4 115 72.2
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 4.0e-38 164.5 134 64.9
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 8.9e-38 163.3 112 70.5
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 2.0e-37 162.2 103 72.8
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 4.9e-36 157.5 144 53.5
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 1.9e-35 155.6 151 57.6
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 2.4e-35 155.2 124 62.9
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 3.0e-33 148.3 102 70.6
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 6.6e-33 147.1 115 61.7
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 1.1e-32 146.4 214 41.6
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 6.2e-31 140.6 113 60.2
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.6e-29 135.2 87 79.3
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.4e-29 134.8 87 79.3
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.4e-29 134.8 87 79.3
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.4e-29 134.4 87 79.3
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 5.8e-29 134.0 87 78.2
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 5.8e-29 134.0 87 79.3
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.9e-28 131.0 87 78.2
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.9e-28 131.0 87 78.2
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 1.4e-27 129.4 92 67.4
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.4e-27 129.4 87 77.0
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 7.1e-27 127.1 177 40.7
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 3.9e-25 121.3 111 54.1
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 1.1e-24 119.8 115 54.8
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 3.1e-22 111.7 52 90.4
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 7.6e-21 107.1 54 87.0
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 9.9e-21 106.7 102 53.9
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 9.9e-21 106.7 51 92.2
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 2.2e-20 105.5 51 92.2
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 6.6e-17 94.0 49 85.7
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 1.9e-16 92.4 57 75.4
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 7.3e-16 90.5 48 83.3
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.3e-12 79.7 45 84.4
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 6.4e-12 77.4 45 84.4
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 5.4e-11 74.3 80 53.8
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 3.5e-10 71.6 36 83.3
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 7.9e-10 70.5 61 54.1
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 4.3e-08 64.7 31 87.1
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 7.4e-08 63.9 52 63.5
Cpa.g.sc791.3 Carica papaya HOM05D003697 ORTHO05D005452 3.7e-07 61.6 79 45.6
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 8.1e-07 60.5 51 58.8


User provided reference genes

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