Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 2.1e-103 379.0 191 100.0
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 4.4e-85 318.2 206 80.6
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 9.9e-85 317.0 206 80.1
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 4.9e-84 314.7 206 78.6
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 4.9e-84 314.7 206 78.6
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.4e-84 314.3 206 78.6
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 8.4e-84 313.9 206 79.1
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.4e-83 313.2 206 78.2
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.9e-83 312.8 206 79.1
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.4e-83 312.4 206 80.6
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 7.1e-83 310.8 207 77.3
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 9.2e-83 310.5 206 77.7
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 1.2e-82 310.1 206 77.2
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.2e-82 310.1 206 78.2
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.6e-82 309.7 206 76.7
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 1.6e-82 309.7 203 78.8
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 2.1e-82 309.3 206 78.2
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.5e-82 308.5 203 78.8
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.5e-82 308.5 203 78.8
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 3.5e-82 308.5 206 77.2
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 3.5e-82 308.5 206 77.2
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 4.6e-82 308.1 206 76.7
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 6.0e-82 307.8 206 77.7
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 6.0e-82 307.8 206 77.7
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.8e-82 307.4 206 76.2
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 7.8e-82 307.4 206 77.2
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 7.8e-82 307.4 206 77.2
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 7.8e-82 307.4 206 77.7
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.0e-81 307.0 207 76.8
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.3e-81 306.6 205 76.6
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 1.3e-81 306.6 206 76.2
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 3.0e-81 305.4 206 75.2
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.0e-81 305.4 206 76.2
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 3.0e-81 305.4 205 77.6
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 3.0e-81 305.4 210 74.8
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 8.6e-81 303.9 206 75.7
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 8.6e-81 303.9 179 80.4
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 8.6e-81 303.9 206 75.7
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 1.5e-80 303.1 206 75.7
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 1.5e-80 303.1 211 75.8
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 1.5e-80 303.1 206 75.2
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 1.9e-80 302.8 206 75.2
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 1.9e-80 302.8 206 75.2
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 2.5e-80 302.4 205 77.1
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 3.3e-80 302.0 206 75.7
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.3e-80 302.0 206 75.7
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 3.3e-80 302.0 206 75.7
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 3.3e-80 302.0 206 74.3
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 4.3e-80 301.6 202 74.8
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 4.3e-80 301.6 206 74.3
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 4.3e-80 301.6 206 75.2
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 5.6e-80 301.2 206 74.3
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 5.6e-80 301.2 206 75.2
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 5.6e-80 301.2 206 75.2
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 5.6e-80 301.2 206 76.2
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 7.3e-80 300.8 206 75.2
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 7.3e-80 300.8 215 73.0
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 7.3e-80 300.8 206 76.2
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 9.6e-80 300.4 233 69.5
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 9.6e-80 300.4 206 74.8
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 1.2e-79 300.1 205 75.6
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 1.2e-79 300.1 210 74.3
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 2.1e-79 299.3 206 73.3
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 2.8e-79 298.9 206 74.3
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 2.8e-79 298.9 206 74.8
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 4.7e-79 298.1 206 74.3
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 6.2e-79 297.7 206 73.8
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 8.1e-79 297.4 206 74.3
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 8.1e-79 297.4 206 72.3
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 1.4e-78 296.6 206 72.8
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 1.8e-78 296.2 206 74.3
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 2.4e-78 295.8 196 79.6
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 3.1e-78 295.4 198 76.3
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 3.1e-78 295.4 206 73.8
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.0e-78 295.0 227 70.0
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.0e-78 295.0 227 70.0
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 8.9e-78 293.9 202 72.8
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 8.9e-78 293.9 276 59.4
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 1.2e-77 293.5 206 72.3
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 1.5e-77 293.1 198 75.3
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.5e-77 293.1 202 74.3
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 3.4e-77 292.0 202 73.3
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 4.4e-77 291.6 202 73.3
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 5.8e-77 291.2 206 73.3
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 5.8e-77 291.2 204 71.6
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 9.9e-77 290.4 206 72.3
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 4.9e-76 288.1 203 70.4
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 3.2e-75 285.4 202 70.3
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 5.4e-75 284.6 194 75.8
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 1.7e-73 279.6 203 69.5
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 1.7e-73 279.6 203 67.5
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.5e-72 276.6 199 71.9
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 1.1e-70 270.4 201 68.2
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 9.9e-69 263.8 210 68.6
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 1.9e-67 259.6 184 72.8
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 1.9e-67 259.6 184 72.8
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 1.9e-67 259.6 184 72.8
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.2e-67 258.5 183 74.9
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 6.0e-66 254.6 200 65.0
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 1.3e-65 253.4 183 74.3
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 5.1e-65 251.5 171 76.0
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 6.2e-63 244.6 202 60.4
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.0e-61 239.6 202 59.9
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 8.4e-60 234.2 161 74.5
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 8.4e-60 234.2 202 58.9
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.1e-59 233.8 157 75.8
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 3.2e-59 232.3 405 39.0
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 1.2e-58 230.3 160 74.4
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 4.6e-58 228.4 161 73.9
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 1.0e-57 227.3 202 56.9
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 2.5e-56 222.6 178 65.2
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 9.6e-56 220.7 160 70.6
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.1e-54 217.2 161 67.7
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.8e-54 216.5 160 71.2
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 6.9e-54 214.5 189 58.7
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 9.0e-54 214.2 183 66.1
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.3e-52 210.3 176 65.9
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 6.5e-52 208.0 128 78.1
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 3.2e-51 205.7 204 56.9
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 9.3e-51 204.1 194 62.4
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 3.5e-50 202.2 157 64.3
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.5e-48 196.8 200 48.5
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.8e-47 191.8 106 91.5
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 4.5e-45 185.3 185 58.9
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.1e-43 180.6 175 58.9
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 3.2e-43 179.1 133 73.7
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 8.7e-41 171.0 102 79.4
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 4.8e-39 165.2 201 44.8
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 3.1e-38 162.5 203 46.3
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 3.1e-38 162.5 291 43.0
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 3.4e-37 159.1 142 62.0
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 1.4e-30 137.1 79 82.3
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-30 134.4 98 69.4
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 2.0e-29 133.3 167 52.1
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 8.8e-25 117.9 77 71.4
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 9.7e-24 114.4 137 49.6
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 4.8e-23 112.1 79 65.8
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 1.6e-21 107.1 68 76.5
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 5.0e-12 75.5 45 73.3


User provided reference genes

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