Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C206G2 Lonicera japonica HOM05D000053 ORTHO05D030004 1.2e-141 506.5 264 100.0
TWI38G0397 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.0e-18 98.2 179 43.0
CAN.G484.19 Capsicum annuum HOM05D000053 ORTHO05D000035 9.6e-14 81.6 98 49.0
PGSC0003DMG400003195 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.8e-13 80.1 100 44.0
Thecc.10G132800 Theobroma cacao HOM05D000053 ORTHO05D000035 3.7e-13 79.7 109 41.3
CAN.G825.35 Capsicum annuum HOM05D000053 ORTHO05D000035 2.4e-12 77.0 99 44.4
CAN.G107.25 Capsicum annuum HOM05D000053 ORTHO05D000035 3.1e-12 76.6 88 45.5
GSVIVG01034788001 Vitis vinifera HOM05D000053 ORTHO05D000035 5.9e-11 72.4 104 44.2
EL10Ac4g08018 Beta vulgaris HOM05D000053 ORTHO05D000035 1.3e-10 71.2 112 39.3
Duzib213G0467 Durio zibethinus HOM05D000053 ORTHO05D000035 3.8e-10 69.7 162 33.3
TWI38G1191 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.4e-09 67.8 102 46.1
TWI73G0933 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.9e-09 67.4 159 33.3
A04p20070 Brassica napus HOM05D000053 ORTHO05D000035 2.5e-09 67.0 111 32.4
Gorai.001G268900 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.5e-09 67.0 154 32.5
Medtr4g018940 Medicago truncatula HOM05D000053 ORTHO05D000448 4.2e-09 66.2 156 43.6
Potri.012G007800 Populus trichocarpa HOM05D000053 ORTHO05D000001 5.5e-09 65.9 173 34.1
BolC8t52591H Brassica oleracea HOM05D000311 ORTHO05D000183 7.2e-09 65.5 129 34.9
TWI34G1516 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 7.2e-09 65.5 98 44.9
C04p55750 Brassica napus HOM05D000053 ORTHO05D000035 9.3e-09 65.1 110 32.7
BolC4t27101H Brassica oleracea HOM05D000053 ORTHO05D000035 9.3e-09 65.1 110 32.7
AUR62036409 Chenopodium quinoa HOM05D000053 ORTHO05D000035 9.3e-09 65.1 116 36.2
QL10p041485 Quercus lobata HOM05D000053 ORTHO05D000448 9.3e-09 65.1 106 40.6
Solyc01g014940.2 Solanum lycopersicum HOM05D000053 ORTHO05D026941 9.3e-09 65.1 159 34.6
FAN06G5035 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.2e-08 64.7 122 38.5
GSVIVG01030340001 Vitis vinifera HOM05D000053 ORTHO05D000448 1.2e-08 64.7 160 33.8
Solyc01g014160.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.7e-08 63.5 121 38.8
AL3G15890 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 3.6e-08 63.2 93 40.9
CANSAT11G2552 Cannabis sativa HOM05D000053 ORTHO05D000035 3.6e-08 63.2 110 41.8
PGSC0003DMG400017968 Solanum tuberosum HOM05D000053 ORTHO05D000035 3.6e-08 63.2 76 44.7
BraA04t17589Z Brassica rapa HOM05D000053 ORTHO05D000035 4.6e-08 62.8 111 31.5
Gohir.D05G341050 Gossypium hirsutum HOM05D000053 ORTHO05D000035 4.6e-08 62.8 94 41.5
C09p64950 Brassica napus HOM05D000053 ORTHO05D000035 6.1e-08 62.4 102 39.2
Solyc01g014930.2 Solanum lycopersicum HOM05D000053 ORTHO05D000035 6.1e-08 62.4 69 52.2
PGSC0003DMG400005538 Solanum tuberosum HOM05D000053 ORTHO05D000035 6.1e-08 62.4 71 47.9
arahy.Tifrunner.gnm1.ann1.75UAZN Arachis hypogaea HOM05D000053 ORTHO05D000035 1.0e-07 61.6 111 36.0
CsaV3_6G006670 Cucumis sativus L. HOM05D000053 ORTHO05D000035 1.8e-07 60.8 110 35.5
DCAR_012081 Daucus carota HOM05D000053 ORTHO05D000035 1.8e-07 60.8 104 36.5
Medtr6g016050 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016055 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016060 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016065 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016070 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016075 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016080 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016085 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016090 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016095 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016100 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016105 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016110 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016115 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016120 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016125 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Medtr6g016130 Medicago truncatula HOM05D000071 ORTHO05D000029 1.8e-07 60.8 128 35.9
Thecc.10G166700 Theobroma cacao HOM05D000053 ORTHO05D000035 1.8e-07 60.8 65 52.3
arahy.Tifrunner.gnm1.ann1.BMX328 Arachis hypogaea HOM05D000053 ORTHO05D000035 2.3e-07 60.5 111 35.1
CiPaw.07G042800 Carya illinoinensis HOM05D000106 ORTHO05D009366 2.3e-07 60.5 82 42.7
Ciclev10014246m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.3e-07 60.5 102 40.2
TAR622G1251 Trochodendron aralioides HOM05D000053 ORTHO05D000035 2.3e-07 60.5 64 51.6
CANSAT11G2659 Cannabis sativa HOM05D000071 ORTHO05D000029 3.0e-07 60.1 98 36.7
Ciclev10023754m.g Citrus clementina HOM05D000053 ORTHO05D000035 3.0e-07 60.1 75 44.0
QL12p009182 Quercus lobata HOM05D000053 ORTHO05D000035 3.0e-07 60.1 99 41.4
Rhsim01G0066400 Rhododendron simsii HOM05D008549 ORTHO05D030004 3.0e-07 60.1 71 45.1
Solyc12g100010.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 3.0e-07 60.1 72 47.2
PGSC0003DMG400005539 Solanum tuberosum HOM05D000053 ORTHO05D000035 3.0e-07 60.1 71 47.9
CAN.G484.17 Capsicum annuum HOM05D000053 ORTHO05D000035 3.9e-07 59.7 86 43.0
Cc00_g05030 Coffea canephora HOM05D000071 ORTHO05D000029 3.9e-07 59.7 109 34.9
SEGI_14389 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 3.9e-07 59.7 109 36.7
AL3G16300 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 5.1e-07 59.3 93 36.6
arahy.Tifrunner.gnm1.ann1.V485GG Arachis hypogaea HOM05D000053 ORTHO05D000035 5.1e-07 59.3 95 38.9
BolC4t23193H Brassica oleracea HOM05D011050 ORTHO05D013523 5.1e-07 59.3 102 36.3
CARHR080100 Cardamine hirsuta HOM05D000053 ORTHO05D000035 5.1e-07 59.3 95 35.8
arahy.Tifrunner.gnm1.ann1.18C3F6 Arachis hypogaea HOM05D000053 ORTHO05D000035 6.7e-07 58.9 103 39.8
A03p45280 Brassica napus HOM05D000053 ORTHO05D000035 6.7e-07 58.9 78 38.5
BraA03t13661Z Brassica rapa HOM05D000053 ORTHO05D000035 6.7e-07 58.9 78 38.5
DCAR_001832 Daucus carota HOM05D000053 ORTHO05D000035 6.7e-07 58.9 70 42.9
Glyma.07G153200 Glycine max HOM05D000053 ORTHO05D000448 6.7e-07 58.9 79 41.8
RcHm_v2.0_Chr2g0113771 Rosa chinensis HOM05D000021 ORTHO05D000010 6.7e-07 58.9 100 36.0
RcHm_v2.0_Chr5g0042831 Rosa chinensis HOM05D000053 ORTHO05D000035 6.7e-07 58.9 100 42.0
Sed0010402 Sechium edule HOM05D000053 ORTHO05D000448 6.7e-07 58.9 108 38.0
Gohir.D05G380100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.7e-07 58.5 63 50.8
A10p25880 Brassica napus HOM05D000053 ORTHO05D000035 1.1e-06 58.2 103 35.9
Gorai.007G338800 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.1e-06 58.2 133 28.6
Mapoly0001s0152 Marchantia polymorpha HOM05D024351 ORTHO05D005974 1.1e-06 58.2 193 26.9
Atru.chr2.3395 Acer truncatum HOM05D000071 ORTHO05D000029 1.5e-06 57.8 118 34.7
Cfa017122 Carpinus fangiana HOM05D000053 ORTHO05D000448 1.5e-06 57.8 177 38.4
Ciclev10014016m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.5e-06 57.8 135 32.6
Ciclev10017771m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.5e-06 57.8 135 32.6
Ciclev10027416m.g Citrus clementina HOM05D000053 ORTHO05D000448 1.5e-06 57.8 107 40.2
PGR014G0003 Punica granatum HOM05D000053 ORTHO05D000035 1.5e-06 57.8 89 39.3
PGR031G1664 Punica granatum HOM05D000053 ORTHO05D000448 1.5e-06 57.8 105 34.3
Sabra16G0116600 Salix brachista HOM05D000053 ORTHO05D000448 1.5e-06 57.8 80 42.5
SalBow7G3938 Salvia bowleyana HOM05D000071 ORTHO05D000029 1.5e-06 57.8 105 35.2
BcaB08g34570 Brassica carinata HOM05D000053 ORTHO05D000035 1.9e-06 57.4 78 35.9
Cc01_g08180 Coffea canephora HOM05D000053 ORTHO05D000035 1.9e-06 57.4 74 45.9
FvH4_7g13570 Fragaria vesca HOM05D000053 ORTHO05D000448 1.9e-06 57.4 104 39.4
Hma1.2p1_0129F.1_g060170 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 1.9e-06 57.4 84 41.7
GSVIVG01015618001 Vitis vinifera HOM05D000053 ORTHO05D000035 1.9e-06 57.4 98 38.8
QL08p015947 Quercus lobata HOM05D000053 ORTHO05D000448 2.5e-06 57.0 89 37.1
TPR.G4580 Trifolium pratense HOM05D000071 ORTHO05D000029 2.5e-06 57.0 128 28.1
TPR.G6500 Trifolium pratense HOM05D000517 ORTHO05D000751 2.5e-06 57.0 116 32.8
AT1G71390 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 3.3e-06 56.6 84 35.7
CAN.G575.9 Capsicum annuum HOM05D000053 ORTHO05D000035 3.3e-06 56.6 110 36.4
Migut.N02334 Erythranthe guttata HOM05D000071 ORTHO05D000029 3.3e-06 56.6 102 34.3
RcHm_v2.0_Chr7g0208841 Rosa chinensis HOM05D000071 ORTHO05D000029 3.3e-06 56.6 122 35.2
CiPaw.05G209900 Carya illinoinensis HOM05D000071 ORTHO05D000029 4.3e-06 56.2 113 35.4
ECA247G2038 Erigeron canadensis HOM05D003109 ORTHO05D004733 4.3e-06 56.2 101 35.6
AT3G05650 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 5.7e-06 55.8 97 33.0
COL.COLO4_37423 Corchorus olitorius HOM05D000053 ORTHO05D000035 5.7e-06 55.8 122 33.6
Medtr0087s0070 Medicago truncatula HOM05D000071 ORTHO05D000029 5.7e-06 55.8 115 28.7
Medtr2g017480 Medicago truncatula HOM05D000071 ORTHO05D000029 5.7e-06 55.8 126 31.0
Nitab4.5_0000365g0170 Nicotiana tabacum HOM05D000029 ORTHO05D006810 5.7e-06 55.8 90 38.9
Thecc.07G159400 Theobroma cacao HOM05D000053 ORTHO05D000035 5.7e-06 55.8 60 50.0
Ah.09g234380 Amaranthus hybridus HOM05D000053 ORTHO05D000035 7.4e-06 55.5 110 36.4
Carub.0003s0498 Capsella rubella HOM05D000053 ORTHO05D000035 7.4e-06 55.5 98 38.8
ClCG06G000820 Citrullus lanatus HOM05D000053 ORTHO05D000035 7.4e-06 55.5 75 38.7
Ciclev10017648m.g Citrus clementina HOM05D000053 ORTHO05D000035 7.4e-06 55.5 51 52.9
HanXRQChr03g0069291 Helianthus annuus HOM05D000053 ORTHO05D000035 7.4e-06 55.5 91 38.5
Lalb_Chr01g0023921 Lupinus albus HOM05D000166 ORTHO05D001348 7.4e-06 55.5 104 34.6
Medtr7g073710 Medicago truncatula HOM05D000033 ORTHO05D000913 7.4e-06 55.5 120 35.0
TAR374G1085 Trochodendron aralioides HOM05D000071 ORTHO05D000029 7.4e-06 55.5 100 35.0
Actinidia11565 Actinidia chinensis HOM05D000053 ORTHO05D000448 9.7e-06 55.1 127 29.1
BolC4t27620H Brassica oleracea HOM05D000053 ORTHO05D000035 9.7e-06 55.1 129 30.2
CiPaw.03G280100 Carya illinoinensis HOM05D000053 ORTHO05D000035 9.7e-06 55.1 89 40.4
COL.COLO4_25517 Corchorus olitorius HOM05D000053 ORTHO05D000035 9.7e-06 55.1 83 41.0
Haze_16213 Corylus avellana HOM05D000053 ORTHO05D000448 9.7e-06 55.1 146 26.7
QL08p006319 Quercus lobata HOM05D000053 ORTHO05D000035 9.7e-06 55.1 62 45.2
TWI73G0994 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 9.7e-06 55.1 119 35.3


User provided reference genes

Program Settings