Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 3.5e-308 1060.8 547 100.0
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.2e-222 775.8 572 70.3
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 1.1e-221 773.5 561 69.5
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.2e-221 771.9 558 70.4
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.1e-220 769.2 511 75.0
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 4.6e-220 768.1 551 69.3
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 3.0e-219 765.4 558 69.2
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.0e-219 765.4 558 70.1
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 8.7e-219 763.8 558 70.3
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.5e-218 762.3 547 71.3
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 3.3e-218 761.9 558 68.6
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 9.7e-218 760.4 573 68.6
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.6e-217 759.6 568 68.5
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.6e-217 759.6 518 72.6
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.6e-217 759.6 563 69.8
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 4.8e-217 758.1 551 68.8
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.8e-216 756.1 541 71.7
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 3.1e-216 755.4 568 69.4
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 3.4e-215 751.9 505 74.1
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 5.9e-215 751.1 566 68.6
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 7.7e-215 750.7 552 69.4
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 1.0e-214 750.4 557 70.2
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.3e-214 750.0 550 68.9
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.8e-214 748.4 554 70.2
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.5e-214 747.7 566 67.8
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 6.5e-214 747.7 554 70.2
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 8.5e-214 747.3 538 69.7
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.5e-213 745.7 550 68.5
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 7.2e-213 744.2 551 69.3
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 7.2e-213 744.2 537 70.2
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 7.2e-213 744.2 526 71.9
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 7.2e-213 744.2 560 69.1
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 7.2e-213 744.2 546 69.2
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 9.4e-213 743.8 551 69.3
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 9.4e-213 743.8 557 68.8
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.6e-212 743.0 577 66.7
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 2.7e-212 742.3 543 69.6
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 2.7e-212 742.3 557 68.2
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.7e-212 742.3 546 68.5
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 7.9e-212 740.7 534 70.4
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 3.0e-211 738.8 473 76.7
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.1e-210 736.9 550 69.6
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.5e-210 736.5 555 68.8
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.0e-210 736.1 546 69.0
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 4.3e-210 734.9 468 77.4
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 5.7e-210 734.6 545 69.2
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 5.7e-210 734.6 460 77.0
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 7.4e-210 734.2 543 70.2
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.2e-209 732.6 546 68.1
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 2.2e-209 732.6 548 69.5
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 4.8e-209 731.5 545 68.6
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.8e-208 729.6 543 68.7
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 6.9e-208 727.6 491 72.9
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 6.9e-208 727.6 560 67.1
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.0e-207 726.1 496 71.8
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 4.5e-207 724.9 558 67.9
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.7e-207 724.2 482 75.3
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 7.7e-207 724.2 488 73.6
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 3.8e-206 721.8 551 66.2
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 8.5e-206 720.7 547 66.9
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.1e-205 720.3 543 67.4
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.5e-205 719.2 567 66.8
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 9.4e-205 717.2 543 66.3
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.0e-203 713.8 493 71.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.8e-203 713.0 519 72.3
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 6.7e-203 711.1 559 66.4
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-202 710.3 565 65.5
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 2.6e-202 709.1 444 76.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 2.6e-202 709.1 445 76.4
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 7.4e-202 707.6 542 67.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 3.7e-201 705.3 443 76.7
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 3.7e-201 705.3 541 65.1
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 3.7e-201 705.3 463 75.6
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 3.7e-201 705.3 492 70.5
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 8.2e-201 704.1 504 68.7
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 4.1e-200 701.8 454 74.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 5.3e-200 701.4 444 75.0
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 7.0e-200 701.0 444 75.0
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.0e-200 701.0 481 73.6
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 9.1e-200 700.7 537 65.0
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.6e-199 699.9 444 74.8
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.6e-199 699.9 444 75.0
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.0e-199 699.5 548 65.0
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.8e-198 695.3 543 65.9
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.6e-196 689.9 606 60.4
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.8e-195 686.4 485 70.1
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.0e-194 682.9 548 63.9
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 5.7e-194 681.4 442 73.8
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 7.5e-194 681.0 459 72.5
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 9.7e-194 680.6 452 72.8
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.7e-193 679.9 490 69.2
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 4.1e-192 675.2 481 68.8
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 9.1e-192 674.1 481 67.6
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 3.5e-191 672.2 538 65.1
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.2e-190 669.5 447 72.5
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.6e-188 663.3 424 74.1
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 4.9e-177 625.2 503 65.4
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 8.0e-172 607.8 372 79.0
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 8.3e-169 597.8 420 69.5
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.3e-166 589.7 509 57.6
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.2e-156 557.4 386 73.8
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 6.8e-147 525.0 407 66.6
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.3e-145 520.8 360 72.2
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.3e-142 510.8 434 58.3
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 2.1e-140 503.4 439 56.0
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 3.4e-138 496.1 432 57.2
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 5.4e-128 462.2 435 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 6.7e-110 402.1 476 46.6
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.1e-109 401.4 519 47.0
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 3.3e-109 399.8 431 52.4
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 8.2e-108 395.2 438 50.9
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 5.3e-107 392.5 441 50.3
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 7.9e-103 378.6 478 44.6
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.4e-99 367.9 465 48.0
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 2.5e-96 357.1 478 43.5
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.0e-94 351.7 443 46.7
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.5e-93 347.8 516 43.4
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 4.5e-90 336.3 235 72.8
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 4.4e-77 293.1 481 38.9
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 6.5e-73 279.3 176 76.7
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.1e-72 278.5 169 79.9
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 2.8e-47 194.1 215 54.0
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.2e-39 168.7 162 56.2
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.9e-36 157.5 129 61.2
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.1e-32 145.6 86 80.2
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 3.8e-28 130.6 138 51.4
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 4.6e-26 123.6 105 58.1
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 6.2e-23 113.2 125 44.8
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 9.9e-21 105.9 102 57.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.3e-17 95.5 58 77.6
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.3e-15 89.0 149 40.3
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.9e-12 77.8 135 38.5
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 3.8e-12 77.4 76 61.8
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 1.1e-11 75.9 133 45.9
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 6.7e-09 66.6 139 38.1
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.8e-07 61.2 37 81.1
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 6.2e-07 60.1 67 49.3


User provided reference genes

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