Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 4.6e-149 531.2 262 100.0
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 6.7e-84 314.7 253 62.1
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.6e-83 312.8 249 61.0
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 3.3e-83 312.4 253 61.7
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 5.7e-83 311.6 249 62.7
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.7e-82 310.1 252 58.7
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 6.3e-82 308.1 253 58.9
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 9.1e-81 304.3 253 60.1
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 3.5e-80 302.4 253 59.7
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 5.9e-80 301.6 253 58.5
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.1e-78 297.4 255 57.3
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.4e-78 297.0 250 54.8
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.4e-78 297.0 253 58.9
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.4e-78 297.0 253 55.7
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.9e-78 296.6 253 59.3
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 1.9e-78 296.6 246 59.8
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.6e-77 293.5 251 58.2
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.7e-77 292.7 253 58.1
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 2.7e-77 292.7 254 56.7
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 6.1e-77 291.6 255 58.4
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 8.0e-77 291.2 255 56.5
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.4e-76 290.4 255 56.9
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.4e-76 290.4 249 54.6
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.3e-76 289.7 255 56.1
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.3e-76 289.7 269 55.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.3e-76 289.7 253 58.1
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.7e-76 288.1 254 57.5
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 2.6e-75 286.2 250 54.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.8e-74 282.7 249 55.4
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.8e-73 280.0 234 59.8
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 3.1e-73 279.3 231 56.3
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 5.3e-73 278.5 252 51.6
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 9.1e-73 277.7 246 52.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.6e-72 276.9 244 56.6
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.0e-72 276.6 235 60.0
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.5e-72 275.8 235 59.6
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.0e-71 274.2 234 56.0
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 8.5e-71 271.2 251 56.2
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.5e-70 270.4 248 52.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.9e-70 270.0 250 54.0
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.2e-70 269.2 249 51.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 2.7e-69 266.2 226 57.1
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 2.7e-69 266.2 231 54.5
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.6e-69 265.8 227 57.3
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 3.6e-69 265.8 248 52.8
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 4.7e-69 265.4 226 57.1
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.0e-68 264.2 253 51.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.0e-68 264.2 255 52.5
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.8e-68 263.5 227 57.3
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.3e-68 263.1 248 52.8
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.0e-68 262.3 247 51.8
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 5.2e-68 261.9 234 55.1
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 8.8e-68 261.2 252 52.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.7e-67 258.5 228 56.6
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.3e-66 257.3 236 53.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 2.2e-66 256.5 234 54.7
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.2e-66 256.5 248 50.0
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 2.8e-66 256.1 249 52.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 4.8e-66 255.4 254 48.8
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 8.3e-66 254.6 253 50.6
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.1e-65 254.2 232 53.9
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.1e-65 254.2 249 48.2
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.8e-65 253.4 253 54.2
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.8e-65 253.4 221 55.2
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 2.4e-65 253.1 234 53.8
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 4.1e-65 252.3 224 51.8
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.1e-65 252.3 232 54.3
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 9.1e-65 251.1 230 53.5
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.6e-64 250.4 261 46.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.7e-64 249.6 235 53.6
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 3.5e-64 249.2 252 47.6
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 5.9e-64 248.4 251 49.8
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 1.7e-63 246.9 235 51.5
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.7e-63 246.9 226 52.2
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.9e-63 246.1 254 48.0
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.8e-63 245.7 234 51.7
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 5.0e-63 245.4 234 51.3
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.5e-62 243.8 215 56.7
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 9.4e-62 241.1 232 50.0
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.6e-61 240.4 253 46.2
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.6e-61 239.2 231 51.1
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.6e-61 239.2 231 51.1
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 3.6e-61 239.2 248 48.0
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 4.7e-61 238.8 235 49.4
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 6.1e-61 238.4 188 62.2
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.0e-60 237.7 254 48.4
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.4e-60 237.3 235 49.8
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.2e-59 234.2 239 49.4
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.5e-59 233.8 252 48.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 2.0e-59 233.4 260 47.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 5.7e-59 231.9 225 50.7
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 7.5e-59 231.5 263 46.4
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 9.8e-59 231.1 253 47.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.7e-58 230.3 252 46.4
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.7e-58 230.3 234 47.0
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.2e-58 229.9 234 47.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.2e-58 229.9 255 47.1
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.8e-58 229.6 252 47.2
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.7e-58 229.2 255 47.1
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 4.8e-58 228.8 252 46.4
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 4.8e-58 228.8 254 46.5
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 6.3e-58 228.4 253 47.0
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 8.3e-58 228.0 267 46.1
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 8.3e-58 228.0 253 46.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-57 227.6 267 46.1
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 2.4e-57 226.5 265 46.4
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.4e-57 226.5 253 46.2
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 7.0e-57 224.9 254 45.7
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 3.5e-56 222.6 252 44.8
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.0e-55 221.1 186 57.0
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.0e-55 221.1 186 57.0
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 6.6e-55 218.4 237 48.5
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 8.6e-55 218.0 250 46.0
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 2.5e-54 216.5 253 44.7
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 2.5e-54 216.5 253 44.7
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.2e-54 215.7 234 48.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.2e-54 215.7 234 48.3
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.0e-52 211.1 228 46.1
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 4.0e-52 209.1 239 45.6
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 5.2e-52 208.8 181 58.0
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 5.2e-52 208.8 236 44.9
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 6.8e-52 208.4 248 44.0
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.6e-51 206.5 206 50.5
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.3e-50 204.1 163 63.2
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 3.7e-50 202.6 234 47.4
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.1e-49 199.1 227 44.9
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 4.5e-48 195.7 257 43.2
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.8e-48 194.9 229 47.2
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.7e-47 193.7 234 43.2
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 7.3e-46 188.3 208 47.6
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 7.5e-43 178.3 236 41.5
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.7e-42 177.2 199 45.7
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.4e-41 172.2 211 43.1
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.0e-39 167.9 216 42.6
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 8.0e-37 158.3 244 35.2
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.8e-36 157.1 161 49.7
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 2.4e-33 146.7 98 63.3
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.7e-32 143.3 145 52.4
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 4.6e-32 142.5 195 39.5
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.8e-29 133.3 101 60.4
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 8.1e-29 131.7 95 62.1
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.3e-26 124.4 113 51.3
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 9.2e-25 118.2 86 61.6
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.5e-22 110.2 239 30.5
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 7.3e-22 108.6 150 40.0
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.2e-21 107.8 142 43.0
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 4.0e-20 102.8 107 44.9
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 7.6e-19 98.6 184 32.6
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 8.4e-18 95.1 77 53.2
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 2.5e-14 83.6 116 36.2
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.4e-09 67.0 55 54.5


User provided reference genes

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