Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.4e-137 493.0 257 100.0
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.9e-91 339.7 245 73.5
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 4.7e-90 335.1 274 69.0
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.4e-89 333.6 295 64.7
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.8e-89 333.2 242 74.8
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.0e-88 329.7 263 68.1
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 5.8e-88 328.2 250 71.6
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.7e-87 325.5 262 68.7
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 6.4e-87 324.7 281 64.1
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 8.3e-87 324.3 262 68.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 3.2e-86 322.4 308 61.0
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 9.2e-86 320.9 309 61.8
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-85 320.5 261 67.8
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 1.6e-85 320.1 279 65.6
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.5e-85 318.9 283 63.6
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.6e-85 318.5 310 60.6
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 4.6e-85 318.5 295 63.1
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.0e-84 317.4 280 63.9
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.3e-84 317.0 306 60.5
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.3e-84 317.0 308 61.0
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 3.9e-84 315.5 279 64.5
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 3.9e-84 315.5 279 64.5
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 6.6e-84 314.7 279 63.8
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 8.6e-84 314.3 306 59.2
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.9e-83 313.2 292 62.7
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.3e-83 312.4 296 61.5
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 3.3e-83 312.4 280 63.2
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 4.3e-83 312.0 276 64.9
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 5.6e-83 311.6 288 60.8
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 7.3e-83 311.2 307 60.3
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.2e-82 310.5 281 63.7
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.2e-82 310.5 307 60.9
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 2.1e-82 309.7 289 61.9
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 2.8e-82 309.3 278 63.3
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 3.6e-82 308.9 278 63.7
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.2e-82 308.1 279 63.4
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 6.2e-82 308.1 245 66.5
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 8.1e-82 307.8 304 58.6
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.1e-81 307.4 279 62.7
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 5.2e-81 305.1 290 62.1
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.5e-80 303.5 296 59.5
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 4.4e-80 302.0 281 60.1
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 5.8e-80 301.6 291 58.1
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 5.8e-80 301.6 292 57.9
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 7.5e-80 301.2 286 59.1
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 7.5e-80 301.2 292 57.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 9.8e-80 300.8 279 60.2
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.3e-79 300.4 279 59.5
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.3e-79 300.4 281 59.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 1.3e-79 300.4 310 55.8
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.3e-79 300.4 252 65.5
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 4.9e-79 298.5 291 57.7
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 6.4e-79 298.1 292 57.9
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.1e-78 297.4 301 58.5
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.9e-78 296.6 291 57.7
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.9e-78 296.6 361 52.1
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.2e-77 293.9 342 52.6
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 2.7e-77 292.7 290 57.9
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 3.5e-77 292.4 291 57.4
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.5e-77 292.4 293 56.3
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 3.5e-77 292.4 278 59.4
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 3.5e-77 292.4 292 56.8
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.7e-76 290.0 284 57.7
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 2.3e-76 289.7 276 59.1
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 5.1e-76 288.5 279 59.5
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.1e-75 287.3 281 57.7
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-75 287.0 292 55.8
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.5e-75 286.2 280 58.6
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-75 286.2 293 56.0
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 3.3e-75 285.8 293 56.0
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 4.3e-75 285.4 292 55.5
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 9.5e-75 284.3 278 58.3
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.6e-74 283.5 286 57.0
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 2.8e-74 282.7 303 56.4
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 3.6e-74 282.3 279 57.7
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.4e-73 280.4 252 64.3
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.2e-72 277.3 305 55.4
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.2e-72 277.3 293 56.0
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.9e-71 272.7 302 55.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.8e-71 272.3 277 54.9
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 8.4e-71 271.2 282 54.6
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.4e-70 270.4 317 52.4
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 7.8e-69 264.6 282 56.0
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.3e-68 263.1 253 59.3
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.3e-68 263.1 214 65.9
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 6.6e-68 261.5 282 51.4
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 8.6e-68 261.2 187 72.7
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 8.6e-68 261.2 212 65.6
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.1e-67 260.8 330 47.6
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 8.4e-63 244.6 188 67.0
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 2.8e-58 229.6 271 50.6
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 3.4e-56 222.6 199 61.3
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 4.2e-54 215.7 261 50.2
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 7.1e-54 214.9 228 57.9
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 8.7e-52 208.0 295 42.4
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 6.2e-50 201.8 298 46.6
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 2.2e-47 193.4 278 42.8
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 2.9e-47 193.0 220 55.5
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.9e-44 182.6 275 41.1
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.6e-43 178.7 275 41.5
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-41 174.5 211 47.9
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.4e-40 169.5 115 75.7
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.5e-38 163.3 133 63.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 3.2e-38 162.9 144 61.8
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.8e-36 157.1 211 45.5
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.1e-36 155.6 130 66.9
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 4.3e-35 152.5 184 48.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 6.9e-33 145.2 210 45.2
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 2.6e-32 143.3 208 45.7
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 3.4e-32 142.9 187 48.1
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 3.4e-32 142.9 208 44.2
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.1e-30 137.9 199 45.7
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 3.2e-30 136.3 104 68.3
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 5.7e-27 125.6 186 45.2
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 2.8e-26 123.2 79 81.0
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.1e-25 121.3 170 47.1
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 3.8e-23 112.8 207 40.6
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 5.5e-22 109.0 103 58.3
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 1.0e-20 104.8 72 73.6
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-16 91.3 141 41.8
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 2.0e-16 90.5 90 54.4
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 7.7e-16 88.6 128 41.4
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 4.1e-09 66.2 184 26.1
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.7e-07 60.8 71 53.5
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.9e-06 57.4 62 54.8
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 5.5e-06 55.8 40 67.5


User provided reference genes

Program Settings