Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 0.0e+00 3063.5 1547 100.0
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 0.0e+00 1666.4 1746 54.4
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1583.2 1761 49.8
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1501.5 1774 48.5
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1500.3 1834 48.6
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1431.4 1812 45.9
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1427.2 1810 45.9
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1424.1 1809 46.3
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1387.5 1770 45.9
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1385.5 1775 45.5
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1366.3 1668 47.2
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1357.8 1756 45.0
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1355.5 1756 45.4
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1353.6 1822 45.0
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1348.2 1794 43.5
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 1338.9 1719 46.0
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1334.7 1701 45.4
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1332.0 1754 45.8
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1321.6 1788 44.3
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 0.0e+00 1317.0 1708 45.7
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1315.4 1762 44.6
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 0.0e+00 1308.5 1673 44.8
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1299.6 1804 43.6
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1287.3 1756 43.7
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 0.0e+00 1286.2 1782 43.9
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1282.7 1762 43.9
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 0.0e+00 1273.5 1662 45.4
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 0.0e+00 1269.2 1684 45.5
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1265.8 1751 43.7
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 0.0e+00 1264.6 1701 44.4
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 0.0e+00 1250.7 1770 43.1
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 0.0e+00 1244.6 1776 42.2
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 0.0e+00 1241.9 1765 42.7
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1241.5 1802 41.7
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 0.0e+00 1240.7 1777 42.5
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1236.1 1790 42.2
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1214.5 1811 41.5
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 0.0e+00 1210.3 1547 44.8
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1205.7 1783 41.1
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1189.1 1793 41.0
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1183.3 1782 40.6
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1182.5 1779 42.0
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1182.2 1780 40.4
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1181.8 1773 41.3
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1181.4 1780 40.6
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 0.0e+00 1175.6 1725 41.9
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 0.0e+00 1135.9 1719 41.2
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 0.0e+00 1130.9 1694 40.7
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 0.0e+00 1102.0 1726 38.8
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 0.0e+00 1100.5 1801 39.5
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1099.3 1674 41.2
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1096.3 1689 40.1
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 1.8e-309 1066.6 1759 39.1
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 2.3e-309 1066.2 1717 39.3
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 4.0e-309 1065.4 1768 38.7
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.5e-308 1063.5 1697 40.4
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 5.9e-305 1051.6 1787 38.3
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 1.7e-304 1050.0 1664 39.4
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 9.5e-303 1044.3 1669 39.0
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 1.2e-300 1037.3 1767 38.0
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 2.7e-297 1026.2 1586 40.9
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 7.8e-297 1024.6 1705 37.8
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 3.3e-295 1019.2 1731 39.0
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 7.3e-295 1018.1 1752 38.6
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 6.2e-294 1015.0 1662 39.5
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 5.2e-293 1011.9 1711 37.5
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 5.2e-293 1011.9 1731 38.2
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 1.5e-292 1010.4 1709 37.4
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 3.4e-292 1009.2 1689 37.7
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 5.8e-292 1008.4 1794 36.7
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 9.8e-292 1007.7 1701 37.6
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 6.6e-288 995.0 1776 37.2
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 1.5e-287 993.8 1704 37.7
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 1.6e-286 990.3 1724 37.7
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 6.2e-286 988.4 1724 37.5
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 8.9e-285 984.6 1692 38.5
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 2.2e-275 953.4 1466 40.2
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 6.9e-269 931.8 1792 35.4
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 2.9e-267 926.4 1823 36.1
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 8.4e-267 924.9 1682 36.1
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 9.3e-266 921.4 1774 35.1
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 3.0e-264 916.4 1687 35.5
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 1.5e-263 914.1 1774 34.8
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 3.3e-263 912.9 1697 35.4
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 1.3e-262 911.0 1680 36.0
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 1.3e-262 911.0 1680 36.0
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 1.1e-261 907.9 1674 35.2
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.3e-251 874.4 1480 38.7
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 2.2e-238 830.5 1657 35.7
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 5.0e-227 792.7 1718 33.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.0e-220 770.8 1706 32.6
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-187 662.1 1140 37.6
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 1.6e-177 628.2 792 45.7
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.7e-171 608.2 731 45.7
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 2.7e-164 584.3 1018 38.1
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 2.4e-157 561.2 551 52.5
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 9.2e-157 559.3 826 40.7
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.8e-145 521.2 1270 30.5
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 3.0e-139 501.1 878 36.8
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 5.0e-118 430.6 734 37.2
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 5.0e-110 404.1 1101 30.1
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 1.3e-105 389.4 680 37.5
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 9.1e-88 330.1 1815 22.5
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 1.6e-87 329.3 1856 22.9
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 1.6e-87 329.3 388 48.5
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 2.6e-82 312.0 1776 23.1
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 2.9e-78 298.5 566 35.7
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 1.3e-65 256.5 489 36.0
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 2.3e-62 245.7 205 56.1
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 1.5e-53 216.5 1529 21.9
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 2.6e-50 205.7 412 35.2
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 6.8e-43 181.0 241 44.0
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 2.9e-41 175.6 270 40.4
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 3.2e-40 172.2 200 44.5
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 3.9e-38 165.2 298 36.6
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 4.0e-35 155.2 133 63.2
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 5.4e-32 144.8 290 36.9
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 1.0e-30 140.6 148 47.3
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 5.6e-29 134.8 107 60.7
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 1.6e-28 133.3 317 33.8
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 1.6e-28 133.3 268 36.2
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 6.2e-28 131.3 198 40.4
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 8.1e-28 131.0 135 47.4
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 4.0e-27 128.6 121 50.4
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 9.0e-27 127.5 147 44.9
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 4.9e-25 121.7 335 31.3
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 1.1e-24 120.6 134 45.5
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 4.2e-24 118.6 127 46.5
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 2.1e-23 116.3 127 46.5
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 2.7e-23 115.9 81 66.7
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 1.0e-22 114.0 122 45.9
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 4.3e-21 108.6 368 24.5
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 5.6e-21 108.2 150 43.3
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 1.1e-19 104.0 150 42.0
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 2.4e-19 102.8 119 47.9
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 3.1e-19 102.4 173 38.7
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 5.8e-18 98.2 77 57.1
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 1.3e-17 97.1 116 43.1
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 1.9e-16 93.2 103 47.6
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 6.0e-15 88.2 105 45.7
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 7.6e-10 71.2 89 40.4
SHI05680 Sapria himalayana HOM05D000105 ORTHO05D003034 3.2e-08 65.9 79 40.5
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 5.5e-08 65.1 85 40.0
Psat2g036680 Pisum sativum HOM05D004890 ORTHO05D005869 1.0e-06 60.8 92 39.1


User provided reference genes

Program Settings