Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 3.9e-166 588.2 321 100.0
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.3e-105 387.1 334 66.2
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 6.1e-103 378.3 328 60.1
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 8.2e-100 367.9 334 61.4
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.2e-98 364.0 328 66.2
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.0e-97 360.9 337 60.8
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 2.2e-97 359.8 333 63.4
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 8.5e-97 357.8 337 61.7
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 8.5e-97 357.8 339 62.2
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 2.5e-96 356.3 333 64.0
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.2e-96 355.9 328 57.3
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 4.2e-96 355.5 346 63.0
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.2e-95 354.0 333 64.0
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 2.1e-95 353.2 339 59.0
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 3.6e-95 352.4 338 60.1
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 3.6e-95 352.4 334 53.6
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.0e-94 350.9 332 58.4
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.4e-94 350.5 329 55.3
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 2.3e-94 349.7 335 53.4
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 5.1e-94 348.6 329 58.7
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 5.1e-94 348.6 335 57.6
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.5e-93 347.1 333 60.1
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.5e-93 347.1 333 58.6
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 7.4e-93 344.7 328 57.6
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 9.7e-93 344.4 334 62.0
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.3e-92 344.0 382 53.4
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 1.7e-92 343.6 329 59.9
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.2e-92 343.2 328 57.3
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 4.8e-92 342.0 329 62.9
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 8.2e-92 341.3 328 57.0
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.8e-91 340.1 326 61.7
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.8e-91 340.1 331 56.5
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 3.1e-91 339.3 343 54.8
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 4.1e-91 339.0 337 61.1
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.2e-90 337.4 330 58.8
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 7.7e-90 334.7 321 56.4
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 3.8e-89 332.4 346 60.1
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 5.0e-89 332.0 325 61.8
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 5.0e-89 332.0 329 55.9
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 8.5e-89 331.3 345 59.1
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.1e-88 330.9 328 60.1
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.4e-88 330.5 334 57.8
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 2.5e-88 329.7 336 52.4
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 4.2e-88 328.9 328 59.8
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.7e-87 326.2 332 57.8
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 3.6e-87 325.9 337 59.9
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.0e-86 324.3 353 58.6
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 2.3e-86 323.2 342 57.9
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 5.2e-86 322.0 362 58.6
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 6.7e-86 321.6 331 60.4
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 6.7e-86 321.6 343 57.1
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 8.8e-86 321.2 350 58.3
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 2.0e-85 320.1 340 54.7
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 2.6e-85 319.7 279 61.6
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.6e-85 319.7 339 51.6
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 4.4e-85 318.9 337 56.1
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.2e-84 316.6 351 58.1
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.4e-83 313.2 329 51.1
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 5.3e-83 312.0 338 59.8
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 7.0e-83 311.6 331 58.9
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 9.1e-83 311.2 324 58.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 2.0e-82 310.1 329 60.5
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 2.0e-82 310.1 334 53.3
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.9e-82 308.5 329 55.0
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 2.9e-81 306.2 358 51.1
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 3.2e-80 302.8 341 50.1
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 2.7e-79 299.7 334 50.9
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 2.6e-77 293.1 333 50.2
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.8e-75 287.0 339 54.0
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.6e-74 283.9 354 54.8
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 2.0e-74 283.5 329 50.2
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.7e-73 280.4 348 46.0
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.2e-72 276.2 329 49.8
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 4.2e-72 275.8 336 51.2
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 1.6e-71 273.9 334 52.7
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 2.7e-71 273.1 342 54.4
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 8.0e-71 271.6 340 49.1
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 3.0e-70 269.6 331 46.8
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 1.5e-69 267.3 329 45.0
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 3.4e-69 266.2 330 52.7
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 4.4e-69 265.8 334 53.3
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 5.7e-69 265.4 334 53.3
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 9.8e-69 264.6 334 53.3
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.7e-68 263.8 307 49.8
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 6.3e-68 261.9 342 52.6
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 8.3e-68 261.5 342 51.2
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 8.3e-68 261.5 342 52.6
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 8.3e-68 261.5 342 51.2
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 8.3e-68 261.5 342 51.2
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 1.8e-67 260.4 342 51.2
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 4.1e-67 259.2 360 50.0
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 5.4e-67 258.8 342 50.9
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 7.0e-67 258.5 372 49.2
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.0e-66 256.9 323 50.2
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 2.7e-66 256.5 339 51.6
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 3.5e-66 256.1 340 47.9
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 4.5e-66 255.8 351 50.7
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.0e-65 252.3 328 41.5
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 1.1e-64 251.1 374 48.9
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.5e-64 250.8 328 42.1
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.2e-64 248.4 328 42.1
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.1e-63 246.9 330 49.1
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 8.0e-63 245.0 275 54.9
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.4e-61 239.6 316 41.1
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 5.7e-61 238.8 315 51.4
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.4e-59 234.2 320 42.8
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 5.2e-54 215.7 307 41.4
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 2.0e-50 203.8 326 38.3
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 1.7e-49 200.7 224 54.9
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 7.3e-48 195.3 127 66.1
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 7.3e-48 195.3 115 74.8
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.6e-47 193.0 323 43.0
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.4e-43 179.1 325 41.8
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.3e-41 173.7 169 58.6
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 6.6e-41 172.2 387 38.0
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 3.6e-39 166.4 347 41.8
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.9e-32 144.1 239 36.8
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 1.2e-31 141.4 131 57.3
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 9.9e-29 131.7 151 45.0
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 2.3e-25 120.6 334 35.9
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 2.4e-22 110.5 115 46.1
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 9.9e-21 105.1 318 28.3
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 2.1e-18 97.4 143 39.2
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.0e-17 95.1 309 26.9
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.6e-15 87.8 340 25.9
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.6e-15 87.8 216 42.1
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.2e-12 77.4 111 37.8
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 3.0e-09 67.0 155 33.5
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 3.9e-09 66.6 93 41.9
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 1.1e-06 58.5 109 35.8
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.1e-06 58.5 95 35.8
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 1.4e-06 58.2 95 40.0


User provided reference genes

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