Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.9e-88 328.6 168 100.0
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.5e-73 278.1 160 87.5
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 4.5e-73 278.1 162 86.4
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.9e-71 272.7 160 84.4
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.3e-71 270.4 160 82.5
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.1e-70 269.2 160 82.5
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.1e-70 269.2 160 85.0
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.7e-70 268.9 159 83.6
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.0e-69 266.9 160 81.2
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.0e-69 266.9 159 83.0
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.3e-69 266.5 158 84.8
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 6.7e-69 264.2 158 82.9
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 8.7e-69 263.8 160 80.6
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 8.7e-69 263.8 160 80.6
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.9e-68 262.7 157 81.5
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 3.3e-68 261.9 161 80.7
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.3e-68 261.9 160 83.1
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 4.3e-68 261.5 159 80.5
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 4.3e-68 261.5 159 80.5
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.7e-68 261.2 160 80.6
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 5.7e-68 261.2 159 79.9
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 7.4e-68 260.8 160 80.6
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 2.1e-67 259.2 158 81.6
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.8e-67 258.8 160 78.1
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.7e-67 258.5 160 79.4
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 6.3e-67 257.7 159 81.1
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 2.4e-66 255.8 160 76.2
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 3.1e-66 255.4 160 78.8
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 4.1e-66 255.0 174 75.9
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.3e-66 254.6 158 79.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 5.3e-66 254.6 159 78.6
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 5.3e-66 254.6 160 80.0
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 9.0e-66 253.8 159 78.0
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 9.0e-66 253.8 159 78.6
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.2e-65 253.4 159 78.0
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.5e-65 253.1 159 76.7
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.5e-65 253.1 160 77.5
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 2.0e-65 252.7 159 78.6
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.0e-65 252.7 158 79.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 3.4e-65 251.9 160 78.1
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 3.4e-65 251.9 160 78.1
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.5e-65 251.5 160 78.8
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 5.9e-65 251.1 161 77.0
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 7.6e-65 250.8 160 77.5
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 7.6e-65 250.8 160 77.5
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.0e-64 250.4 160 75.6
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.0e-64 250.4 160 75.6
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.3e-64 250.0 161 75.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.7e-64 249.6 161 78.3
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.7e-64 249.6 161 77.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-64 249.6 159 77.4
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.2e-64 249.2 160 76.9
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.9e-64 248.8 160 78.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.9e-64 248.8 158 76.6
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.9e-64 248.8 160 78.1
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.9e-64 248.8 159 76.7
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 3.8e-64 248.4 161 75.2
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 3.8e-64 248.4 161 75.2
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.8e-64 248.4 160 76.9
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 5.0e-64 248.1 160 78.1
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.0e-64 248.1 161 77.0
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 5.0e-64 248.1 158 76.6
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 5.0e-64 248.1 160 73.8
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 6.5e-64 247.7 159 77.4
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 6.5e-64 247.7 161 75.2
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 8.4e-64 247.3 160 76.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 8.4e-64 247.3 158 75.9
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-63 246.9 161 75.2
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-63 246.9 160 76.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.1e-63 246.9 160 75.0
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.4e-63 246.5 161 75.8
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.4e-63 246.5 160 76.2
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 2.5e-63 245.7 161 74.5
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 3.2e-63 245.4 160 74.4
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.2e-63 245.0 160 75.0
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.2e-63 245.0 160 75.6
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.2e-63 245.0 158 75.3
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 4.2e-63 245.0 162 74.7
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 4.2e-63 245.0 162 74.7
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 4.2e-63 245.0 160 73.8
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 4.2e-63 245.0 160 78.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 5.5e-63 244.6 159 75.5
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 5.5e-63 244.6 160 75.0
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 7.2e-63 244.2 161 74.5
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 9.3e-63 243.8 161 73.3
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.2e-62 243.4 159 76.1
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.2e-62 243.4 160 76.9
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-62 243.4 160 74.4
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.2e-62 243.4 160 72.5
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.6e-62 243.0 160 73.8
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.6e-62 243.0 160 73.8
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.1e-62 242.7 160 74.4
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.7e-62 242.3 159 75.5
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-62 242.3 159 75.5
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.7e-62 242.3 160 73.8
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 3.5e-62 241.9 160 75.0
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 4.6e-62 241.5 166 72.9
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 4.6e-62 241.5 162 74.1
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 4.6e-62 241.5 162 74.1
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 7.9e-62 240.7 160 70.6
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.9e-62 240.7 161 74.5
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.9e-62 240.7 161 74.5
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 7.9e-62 240.7 161 74.5
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 7.9e-62 240.7 159 74.2
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.3e-61 240.0 160 70.6
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.3e-61 240.0 159 74.8
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 2.3e-61 239.2 181 66.9
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 3.0e-61 238.8 160 72.5
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 5.1e-61 238.0 160 74.4
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 8.7e-61 237.3 162 72.8
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 8.7e-61 237.3 159 71.7
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.5e-60 235.7 160 71.2
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 3.3e-60 235.3 158 72.2
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 4.3e-60 235.0 150 78.0
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 7.4e-60 234.2 161 72.0
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.2e-59 232.6 145 78.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.1e-58 230.3 143 79.0
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.1e-58 230.3 186 65.1
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 9.0e-58 227.3 142 79.6
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.2e-57 226.9 149 74.5
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.0e-57 226.1 149 73.8
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.4e-57 225.3 186 63.4
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 1.4e-55 219.9 160 69.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 2.5e-55 219.2 159 68.6
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 4.2e-55 218.4 142 73.9
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.2e-55 217.6 156 69.9
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.0e-53 213.8 136 78.7
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-53 213.8 158 67.1
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-53 213.8 158 67.1
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.4e-53 213.4 160 66.2
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.3e-53 212.6 161 65.2
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.9e-53 211.8 144 70.8
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 5.1e-53 211.5 137 73.7
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 8.8e-53 210.7 164 65.9
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.4e-52 207.6 157 65.6
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-50 203.8 194 56.7
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.1e-50 202.2 158 67.1
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 5.3e-50 201.4 144 68.8
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 1.2e-49 200.3 144 68.8
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.9e-49 198.0 157 65.6
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 5.0e-48 194.9 157 60.5
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 8.5e-48 194.1 144 65.3
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.4e-47 193.4 158 63.9
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.2e-47 192.2 153 66.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 9.4e-47 190.7 159 58.5
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 2.4e-42 176.0 160 58.8
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 2.6e-41 172.6 146 64.4
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 6.5e-40 167.9 162 54.9
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.7e-38 162.5 157 57.3
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.0e-37 160.6 168 55.4
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 5.2e-37 158.3 154 55.2
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.5e-36 156.8 105 71.4
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 3.3e-36 155.6 158 53.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 7.5e-36 154.5 141 62.4
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.3e-35 153.7 157 52.2
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.7e-33 146.0 112 61.6
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 7.7e-33 144.4 159 49.1
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.0e-32 141.7 168 47.6
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.0e-29 132.1 114 59.6
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 2.4e-26 122.9 78 75.6
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.2e-24 116.3 98 59.2
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 2.7e-22 109.4 181 38.1
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 6.8e-21 104.8 163 39.3
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 9.2e-18 94.4 51 94.1
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 7.7e-17 91.3 52 86.5
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 5.6e-15 85.1 87 49.4
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.1e-14 83.2 71 54.9
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.6e-14 82.4 99 42.4
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.3e-11 73.9 108 45.4
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 9.2e-10 67.8 36 94.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 3.9e-08 62.4 157 29.3


User provided reference genes

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