Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 0.0e+00 1294.3 662 100.0
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 9.2e-247 857.1 676 68.2
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.9e-232 808.1 687 64.2
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.2e-231 805.4 678 64.5
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.6e-230 803.1 678 64.0
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 3.5e-230 802.0 680 63.7
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 4.0e-226 788.5 665 63.3
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 6.8e-226 787.7 657 63.9
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-224 783.5 693 62.8
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 6.4e-224 781.2 664 62.0
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.4e-223 780.0 644 64.1
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.4e-223 780.0 680 62.4
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 7.1e-223 777.7 679 62.9
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.0e-221 773.9 681 62.0
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.9e-221 771.9 682 61.6
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 3.3e-220 768.8 641 63.7
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 9.6e-220 767.3 679 61.1
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.4e-218 763.5 650 62.6
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 4.0e-218 761.9 671 62.3
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.0e-217 759.6 642 63.7
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 9.9e-217 757.3 671 61.7
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.2e-216 756.1 672 61.8
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.4e-215 753.4 671 61.4
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 7.1e-215 751.1 657 61.0
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.7e-214 749.2 662 61.0
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.6e-214 748.4 677 59.5
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.9e-213 745.3 681 60.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.5e-212 743.4 663 60.5
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.3e-212 741.1 681 59.0
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.6e-211 740.0 673 59.4
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.4e-210 736.9 667 60.1
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 3.1e-210 735.7 634 61.7
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.8e-209 731.5 719 58.8
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.1e-207 727.2 663 60.5
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 4.6e-206 721.8 670 58.4
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 5.1e-205 718.4 636 60.1
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 5.1e-205 718.4 679 57.1
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.3e-204 715.7 679 59.5
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 4.3e-204 715.3 687 58.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 4.8e-203 711.8 670 60.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.1e-202 710.7 643 58.8
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.1e-202 710.7 657 58.4
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 6.9e-202 708.0 667 59.5
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.6e-201 706.1 688 57.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.8e-201 704.9 662 57.9
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.3e-200 703.7 678 58.8
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 4.9e-200 701.8 636 60.4
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.1e-199 700.7 636 58.3
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.2e-199 698.7 664 58.6
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.3e-197 693.0 663 57.8
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.9e-197 692.2 637 58.9
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 6.7e-197 691.4 664 58.3
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 8.7e-197 691.0 670 55.4
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 2.1e-195 686.4 674 57.7
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.8e-195 686.0 640 59.2
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.8e-195 686.0 661 56.7
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 9.0e-194 681.0 652 57.2
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 2.6e-193 679.5 649 57.0
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 4.5e-193 678.7 633 60.2
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 5.8e-193 678.3 657 55.4
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 5.8e-193 678.3 646 59.3
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.0e-192 677.6 669 56.8
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.9e-192 676.0 668 55.2
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 4.9e-192 675.2 664 56.9
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 4.9e-192 675.2 655 57.1
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 6.5e-192 674.9 639 57.7
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 2.5e-191 672.9 654 56.0
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.2e-190 670.6 659 54.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.1e-190 669.8 642 55.8
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 7.9e-190 667.9 647 57.7
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.8e-189 666.8 667 54.9
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.8e-189 666.8 667 54.9
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.8e-189 666.8 657 57.1
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 3.0e-189 666.0 635 57.3
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.9e-188 663.3 684 54.8
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 4.3e-188 662.1 630 57.3
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.7e-187 659.1 654 54.9
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 4.1e-186 655.6 640 55.6
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 6.9e-186 654.8 630 56.5
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 9.0e-186 654.4 659 54.2
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.2e-185 654.1 673 55.4
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.0e-185 653.3 654 54.0
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 4.5e-185 652.1 663 53.5
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 5.9e-185 651.7 655 54.0
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 6.5e-184 648.3 641 54.8
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 3.2e-183 646.0 643 58.5
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 9.4e-183 644.4 678 52.5
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 5.1e-181 638.6 672 55.8
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 6.7e-181 638.3 688 53.6
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-177 627.1 688 54.8
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 7.7e-177 624.8 690 52.5
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.6e-174 617.1 664 51.1
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 7.9e-174 614.8 659 53.6
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 2.0e-172 610.1 656 52.1
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 1.8e-170 603.6 679 52.0
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 9.1e-170 601.3 642 52.8
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.2e-169 600.9 539 59.4
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 3.5e-169 599.4 685 51.7
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 6.3e-163 578.6 653 51.6
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 8.2e-163 578.2 557 56.6
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 4.5e-161 572.4 637 50.4
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.3e-160 570.9 639 49.8
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-159 566.6 641 50.2
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 4.4e-156 555.8 620 50.3
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 3.1e-154 549.7 645 48.5
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.9e-151 540.4 679 49.2
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 9.4e-151 538.1 648 48.0
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.5e-143 514.2 523 56.2
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.7e-139 500.7 512 54.9
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.1e-127 461.5 637 46.8
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 5.6e-127 459.1 639 43.3
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.7e-115 421.0 674 40.4
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 3.2e-114 416.8 647 41.6
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 7.1e-106 389.0 441 52.6
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 3.1e-101 373.6 534 44.2
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 4.3e-95 353.2 368 55.2
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 7.6e-92 342.4 264 67.0
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 9.0e-85 318.9 607 37.6
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 9.3e-82 308.9 358 50.0
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 1.0e-75 288.9 361 46.3
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.6e-73 280.0 281 55.9
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.2e-68 265.4 408 42.4
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.3e-62 245.4 299 48.8
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.6e-60 237.7 288 51.0
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 4.5e-60 236.9 293 44.0
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.0e-59 235.7 317 40.4
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.7e-54 217.2 252 50.4
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.1e-53 215.7 259 47.9
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.2e-52 212.2 119 86.6
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.7e-51 208.4 172 67.4
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.6e-49 200.7 121 76.9
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.1e-45 189.1 155 68.4
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.2e-44 185.7 228 43.0
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 9.4e-42 176.0 249 41.0
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.6e-39 167.9 139 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 5.7e-39 166.8 164 57.3
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.2e-38 164.9 176 52.3
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 2.0e-36 158.3 131 64.1
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.0e-36 158.3 138 61.6
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.5e-36 157.5 186 50.5
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.5e-36 157.5 142 59.2
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 4.5e-36 157.1 98 76.5
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.8e-35 154.1 281 34.2
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.0e-32 144.1 113 66.4
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 4.5e-28 130.6 196 41.3
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.7e-28 129.8 344 29.1
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.7e-28 129.8 124 59.7
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 2.1e-25 121.7 87 70.1
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 3.6e-25 120.9 176 43.8
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 4.7e-25 120.6 87 70.1
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 6.8e-24 116.7 65 83.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 9.8e-23 112.8 108 52.8
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.4e-21 107.1 79 73.4
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 7.0e-21 106.7 78 75.6
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 7.0e-21 106.7 175 37.7
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.2e-20 105.9 74 73.0
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.5e-20 104.4 70 70.0
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.6e-17 95.5 111 45.9
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 6.2e-17 93.6 69 69.6
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 6.4e-14 83.6 69 53.6
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 3.2e-13 81.3 147 39.5
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 5.0e-11 73.9 49 71.4
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 7.3e-10 70.1 49 63.3
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 6.2e-09 67.0 72 54.2
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 2.3e-08 65.1 48 58.3
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.2e-07 62.8 120 36.7


User provided reference genes

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