Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 4.7e-140 501.1 244 100.0
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 5.8e-114 414.5 244 80.3
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 3.1e-107 392.1 243 75.7
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 2.6e-106 389.0 244 74.6
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 3.4e-106 388.7 244 75.4
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 1.1e-104 383.6 247 74.5
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 4.2e-104 381.7 243 75.7
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.6e-103 379.8 245 75.5
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 4.6e-103 378.3 241 75.9
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 6.0e-103 377.9 243 72.8
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 1.8e-102 376.3 245 71.8
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 3.9e-102 375.2 244 72.5
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 8.7e-102 374.0 246 74.8
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 8.7e-102 374.0 244 75.0
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.1e-101 373.6 244 74.6
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 1.5e-101 373.2 244 72.1
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 3.3e-101 372.1 244 72.5
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 4.3e-101 371.7 244 72.5
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 7.4e-101 370.9 243 73.3
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 7.4e-101 370.9 244 72.1
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-100 370.2 244 70.9
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 1.1e-99 367.1 247 72.9
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 1.4e-99 366.7 244 72.5
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.4e-99 366.7 247 70.0
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 1.8e-99 366.3 245 71.4
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.8e-99 366.3 244 71.7
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 5.3e-99 364.8 244 73.4
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 9.0e-99 364.0 246 71.1
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 2.0e-98 362.8 245 69.8
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 2.0e-98 362.8 246 70.7
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 2.0e-98 362.8 245 72.2
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 2.6e-98 362.5 244 71.3
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 5.8e-98 361.3 244 71.3
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 7.6e-98 360.9 244 69.7
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 9.9e-98 360.5 246 71.5
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.7e-97 359.8 244 70.1
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 3.8e-97 358.6 244 70.9
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.8e-97 358.6 244 70.9
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 6.4e-97 357.8 246 71.1
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 6.4e-97 357.8 230 75.2
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 8.4e-97 357.5 245 69.8
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.1e-96 357.1 223 74.9
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 1.4e-96 356.7 247 70.4
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 1.9e-96 356.3 247 69.2
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 3.2e-96 355.5 244 70.1
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 5.5e-96 354.8 245 71.0
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 7.1e-96 354.4 244 71.3
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 7.1e-96 354.4 220 76.4
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 9.3e-96 354.0 244 71.7
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 1.6e-95 353.2 245 69.0
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 2.1e-95 352.8 243 70.4
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 6.0e-95 351.3 248 65.7
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 7.9e-95 350.9 244 69.7
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.3e-94 350.1 244 68.9
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.3e-94 349.4 245 67.8
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 5.1e-94 348.2 244 70.9
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 5.1e-94 348.2 243 69.1
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 3.3e-93 345.5 244 68.9
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 4.3e-93 345.1 245 67.8
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 7.4e-93 344.4 245 66.5
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.3e-92 343.6 245 66.9
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 2.1e-92 342.8 221 72.9
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 2.8e-92 342.4 245 67.8
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.4e-91 340.1 244 67.6
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 2.4e-91 339.3 226 69.9
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 5.3e-91 338.2 244 66.0
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 5.3e-91 338.2 244 66.0
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 2.0e-90 336.3 244 66.0
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 1.0e-89 334.0 244 66.4
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-89 333.2 243 65.4
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 1.7e-89 333.2 244 65.6
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 1.7e-89 333.2 243 65.4
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 2.2e-89 332.8 272 62.1
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 2.2e-89 332.8 266 63.2
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 3.8e-89 332.0 220 70.5
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 3.8e-89 332.0 244 63.9
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.5e-89 331.3 220 69.1
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.4e-88 330.1 244 65.2
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 1.9e-88 329.7 244 64.3
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 1.9e-88 329.7 244 64.3
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 5.5e-88 328.2 221 69.7
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 5.5e-88 328.2 244 64.3
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 5.5e-88 328.2 244 65.2
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 9.3e-88 327.4 244 64.3
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 9.3e-88 327.4 244 64.3
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 9.3e-88 327.4 244 64.3
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.2e-87 327.0 244 63.9
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.6e-87 326.6 237 65.0
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 2.7e-87 325.9 244 63.1
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 7.9e-87 324.3 248 66.9
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.0e-86 323.9 249 66.7
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.7e-86 321.2 220 67.3
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 1.6e-84 316.6 244 63.9
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.7e-84 315.5 224 67.0
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.1e-83 313.9 222 68.9
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 1.8e-83 313.2 245 61.6
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.4e-83 312.8 244 61.1
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 2.4e-83 312.8 247 63.2
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 3.1e-83 312.4 244 62.7
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 2.0e-82 309.7 222 66.7
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 2.0e-82 309.7 222 64.0
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 3.4e-82 308.9 390 45.4
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 7.2e-80 301.2 198 72.2
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 1.5e-77 293.5 240 59.6
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 5.7e-77 291.6 247 59.1
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 6.3e-76 288.1 187 71.7
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 3.4e-74 282.3 256 58.2
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 4.4e-69 265.4 244 55.3
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.0e-65 254.2 177 71.8
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 5.0e-57 225.3 152 69.1
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 6.1e-55 218.4 252 45.6
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 9.7e-53 211.1 154 63.0
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.1e-51 207.6 234 47.4
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.1e-51 207.6 251 45.0
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.4e-51 207.2 236 45.3
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 5.9e-50 201.8 245 43.3
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 1.0e-49 201.1 236 44.9
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.6e-47 193.7 230 43.9
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 6.1e-47 191.8 131 68.7
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 1.5e-45 187.2 178 53.9
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 3.7e-44 182.6 229 42.8
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 1.2e-42 177.6 227 43.2
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 6.8e-38 161.8 219 42.0
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 6.8e-38 161.8 92 78.3
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 2.2e-36 156.8 126 59.5
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 3.7e-36 156.0 232 37.5
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 5.9e-34 148.7 292 32.9
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 3.8e-33 146.0 123 60.2
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 1.0e-25 121.3 239 31.8
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 2.5e-16 90.1 255 27.5
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.1e-15 87.0 51 72.5
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.8e-15 86.7 58 67.2
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.9e-12 76.6 53 67.9
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 5.1e-09 65.9 168 26.8
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 2.1e-07 60.5 103 33.0


User provided reference genes

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