Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.6e-253 879.0 468 100.0
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.7e-141 505.8 563 54.4
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 1.0e-127 461.1 623 49.6
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 3.3e-126 456.1 614 49.2
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.0e-119 434.5 620 46.5
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 1.3e-117 427.6 630 48.3
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.3e-114 417.5 630 44.1
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 1.3e-114 417.5 608 46.2
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 3.8e-114 416.0 602 45.2
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.0e-114 415.6 633 44.9
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 3.2e-113 412.9 633 44.9
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.1e-112 410.2 625 44.5
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 6.8e-111 405.2 621 44.4
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 4.4e-110 402.5 620 44.2
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.7e-110 402.1 638 44.2
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.3e-109 401.0 626 44.7
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 4.5e-107 392.5 622 44.5
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.5e-107 392.5 622 44.5
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 7.7e-107 391.7 631 43.3
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 7.7e-107 391.7 616 44.0
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.0e-106 391.3 620 44.5
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 1.7e-106 390.6 540 47.0
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 3.8e-106 389.4 655 42.1
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 1.5e-105 387.5 655 42.1
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 1.5e-105 387.5 539 45.6
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.9e-105 387.1 618 44.0
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 3.2e-105 386.3 686 40.7
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 4.2e-105 386.0 571 45.5
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 7.2e-105 385.2 604 43.7
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.2e-104 384.4 627 42.4
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 6.1e-104 382.1 599 42.6
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 2.3e-103 380.2 527 46.7
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 8.8e-103 378.3 592 43.1
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 5.7e-102 375.6 597 43.0
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 9.8e-102 374.8 602 43.0
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 4.9e-101 372.5 600 41.7
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 8.3e-101 371.7 588 42.2
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 1.1e-100 371.3 541 45.1
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.4e-100 369.0 541 44.9
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 5.4e-100 369.0 512 45.9
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 9.1e-100 368.2 351 60.1
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 3.5e-99 366.3 622 41.0
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 3.5e-99 366.3 606 41.7
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.5e-99 365.9 637 40.3
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.0e-98 364.8 609 41.5
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.3e-98 364.4 607 41.0
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 5.5e-97 359.0 303 64.0
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.3e-95 353.6 645 40.3
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 7.5e-94 348.6 558 43.4
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 5.4e-92 342.4 540 44.4
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 9.2e-92 341.7 620 39.0
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 2.9e-90 336.7 585 41.5
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 4.3e-89 332.8 372 52.2
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 4.0e-87 326.2 315 58.1
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 2.1e-80 303.9 449 47.4
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 4.9e-77 292.7 274 60.6
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 1.4e-76 291.2 313 53.7
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.4e-71 274.6 275 57.5
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 1.5e-70 271.2 517 37.7
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.4e-63 247.3 242 56.6
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 4.4e-62 243.0 494 36.4
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 8.4e-61 238.8 534 37.1
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 1.1e-57 228.4 422 40.5
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 2.5e-57 227.3 397 41.8
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 9.6e-57 225.3 578 33.2
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 9.3e-52 208.8 549 35.3
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 1.7e-50 204.5 215 54.0
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 4.3e-49 199.9 275 43.6
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 6.4e-45 186.0 395 35.9
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 1.8e-34 151.4 166 48.8
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.7e-33 146.4 219 39.3
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 1.1e-31 142.1 481 29.5
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 9.3e-28 129.0 203 40.4
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 1.6e-27 128.3 152 53.3
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.1e-27 126.3 288 30.9
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.1e-27 126.3 288 30.9
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 5.1e-26 123.2 325 33.8
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 6.7e-26 122.9 140 57.9
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.1e-25 122.1 339 32.7
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 2.5e-25 120.9 113 65.5
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.7e-22 109.4 292 28.8
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.7e-21 108.2 345 29.9
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.2e-20 102.8 354 27.1
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 1.6e-19 101.7 188 35.1
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 1.4e-18 98.6 117 53.8
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.0e-18 97.4 261 28.7
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 8.5e-13 79.3 222 32.0
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 4.2e-12 77.0 110 46.4
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.2e-11 75.5 261 27.6
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 4.7e-11 73.6 376 27.1
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.9e-10 70.5 272 27.6
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.5e-09 68.6 272 27.9
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.5e-09 68.6 272 27.2
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 7.4e-09 66.2 143 32.9
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 9.7e-09 65.9 263 26.6
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 9.7e-09 65.9 266 25.2
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.3e-08 65.5 248 26.2
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.7e-08 65.1 207 27.1
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 3.7e-08 63.9 256 24.6
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 4.8e-08 63.5 267 25.8
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 4.8e-08 63.5 264 26.5
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 6.3e-08 63.2 269 26.0
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 8.2e-08 62.8 242 25.6
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 8.2e-08 62.8 242 25.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.1e-07 62.4 268 24.6
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.8e-07 61.6 263 25.9
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 2.4e-07 61.2 228 26.3
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 4.1e-07 60.5 263 26.2
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 4.1e-07 60.5 50 58.0
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 5.3e-07 60.1 244 25.8
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 5.3e-07 60.1 358 23.2
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 7.0e-07 59.7 234 23.9
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 9.1e-07 59.3 419 24.1
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 1.6e-06 58.5 264 25.8
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.6e-06 58.5 200 24.0
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.6e-06 58.5 233 24.5
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 1.6e-06 58.5 273 25.6
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 2.0e-06 58.2 200 28.0
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 4.5e-06 57.0 263 24.3
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 4.5e-06 57.0 242 25.2
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 4.5e-06 57.0 160 30.6
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 5.9e-06 56.6 415 22.7
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 5.9e-06 56.6 202 24.8


User provided reference genes

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