Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 5.3e-50 200.7 99 100.0
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 4.6e-25 117.9 98 64.3
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 9.8e-20 100.1 97 54.6
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 1.1e-18 96.7 97 50.5
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 1.9e-18 95.9 96 54.2
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 1.9e-18 95.9 116 48.3
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.4e-18 95.5 96 51.0
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 3.2e-18 95.1 96 53.1
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 3.2e-18 95.1 96 51.0
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 5.4e-18 94.4 96 53.1
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 9.2e-18 93.6 97 51.5
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 1.2e-17 93.2 97 48.5
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 3.5e-17 91.7 100 48.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.5e-17 91.7 97 48.5
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 4.6e-17 91.3 97 50.5
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 4.6e-17 91.3 101 48.5
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 6.0e-17 90.9 97 48.5
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 6.0e-17 90.9 97 47.4
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 7.8e-17 90.5 97 49.5
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 7.8e-17 90.5 97 49.5
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 1.0e-16 90.1 97 50.5
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 1.0e-16 90.1 96 50.0
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 1.0e-16 90.1 96 49.0
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 1.3e-16 89.7 97 49.5
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 1.3e-16 89.7 96 47.9
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 1.7e-16 89.4 101 50.5
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.7e-16 89.4 98 49.0
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.7e-16 89.4 98 49.0
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 2.3e-16 89.0 96 47.9
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 2.3e-16 89.0 96 47.9
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 2.3e-16 89.0 95 50.5
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.0e-16 88.6 97 47.4
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 3.0e-16 88.6 97 47.4
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 3.0e-16 88.6 96 50.0
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 3.0e-16 88.6 97 48.5
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 3.9e-16 88.2 96 46.9
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 5.0e-16 87.8 97 48.5
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 5.0e-16 87.8 98 48.0
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.0e-16 87.8 96 47.9
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 5.0e-16 87.8 97 48.5
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 5.0e-16 87.8 97 49.5
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 5.0e-16 87.8 97 46.4
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 5.0e-16 87.8 96 50.0
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 6.6e-16 87.4 99 46.5
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 6.6e-16 87.4 96 50.0
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 6.6e-16 87.4 96 49.0
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 6.6e-16 87.4 96 49.0
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 1.5e-15 86.3 96 47.9
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 1.5e-15 86.3 98 46.9
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.5e-15 86.3 98 46.9
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 2.5e-15 85.5 96 47.9
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 2.5e-15 85.5 98 48.0
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.3e-15 85.1 102 44.1
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.3e-15 85.1 102 44.1
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 3.3e-15 85.1 102 44.1
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 3.3e-15 85.1 97 47.4
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 4.3e-15 84.7 97 46.4
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 4.3e-15 84.7 97 44.3
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.6e-15 84.3 96 46.9
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 5.6e-15 84.3 96 46.9
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 5.6e-15 84.3 96 51.0
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 5.6e-15 84.3 96 51.0
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 9.5e-15 83.6 97 46.4
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 9.5e-15 83.6 96 46.9
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 9.5e-15 83.6 99 43.4
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 9.5e-15 83.6 97 46.4
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 1.2e-14 83.2 96 47.9
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.6e-14 82.8 98 45.9
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 4.7e-14 81.3 96 46.9
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 4.7e-14 81.3 95 43.2
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 1.1e-13 80.1 99 43.4
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 2.3e-13 79.0 108 41.7
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 5.2e-13 77.8 96 45.8
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 6.8e-13 77.4 97 44.3
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 8.9e-13 77.0 97 43.3
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 8.9e-13 77.0 97 42.3
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 8.9e-13 77.0 97 42.3
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 2.0e-12 75.9 99 41.4
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 5.8e-12 74.3 98 43.9
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 9.9e-12 73.6 93 44.1
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 9.9e-12 73.6 93 44.1
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 9.9e-12 73.6 93 44.1
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 1.3e-11 73.2 95 44.2
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 1.7e-11 72.8 93 44.1
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 2.2e-11 72.4 97 43.3
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 2.2e-11 72.4 51 64.7
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 2.2e-11 72.4 98 42.9
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 3.7e-11 71.6 98 42.9
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 3.7e-11 71.6 97 41.2
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 4.9e-11 71.2 96 43.8
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 6.4e-11 70.9 73 50.7
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 6.4e-11 70.9 53 64.2
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 8.3e-11 70.5 69 49.3
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 8.3e-11 70.5 93 43.0
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 1.1e-10 70.1 98 37.8
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 1.9e-10 69.3 94 44.7
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 2.4e-10 68.9 98 41.8
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 4.1e-10 68.2 73 52.1
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 5.4e-10 67.8 98 39.8
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 7.1e-10 67.4 98 40.8
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 9.2e-10 67.0 96 39.6
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 7.8e-09 63.9 53 56.6
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 1.3e-08 63.2 96 39.6
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 6.6e-08 60.8 44 68.2
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 8.6e-08 60.5 99 40.4


User provided reference genes

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