Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 6.7e-277 956.8 521 100.0
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 5.9e-164 581.6 546 66.1
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 2.7e-153 546.2 538 65.4
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.2e-150 536.6 538 61.2
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-146 524.2 533 57.8
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.4e-141 507.3 534 59.4
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 2.4e-141 506.5 530 59.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 3.1e-141 506.1 544 61.4
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 7.7e-140 501.5 567 56.6
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.3e-139 500.7 537 59.6
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.5e-139 498.4 493 63.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.9e-138 496.9 543 60.4
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 3.2e-138 496.1 544 56.1
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.2e-138 496.1 544 56.8
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 4.2e-138 495.7 544 56.8
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 9.4e-138 494.6 544 56.4
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.1e-137 493.4 550 58.5
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 8.0e-137 491.5 536 59.1
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.8e-136 490.3 523 57.7
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.3e-136 490.0 528 59.3
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 6.8e-136 488.4 514 58.9
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 7.5e-135 485.0 523 57.7
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 2.8e-134 483.0 513 61.8
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.8e-134 483.0 561 55.1
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.4e-133 479.9 542 56.5
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.7e-132 476.5 524 59.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 3.5e-132 476.1 539 57.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.0e-131 474.6 545 55.4
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.5e-130 470.7 521 54.9
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 2.7e-129 466.5 525 57.7
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.8e-128 463.8 539 54.7
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 9.8e-127 458.0 551 56.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.2e-126 456.8 538 55.6
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.2e-126 456.8 543 54.1
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.7e-126 456.1 547 53.7
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 8.3e-126 454.9 540 57.0
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 5.4e-125 452.2 548 53.6
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.4e-125 452.2 546 53.3
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 9.1e-125 451.4 529 54.4
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.6e-124 450.7 546 53.8
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-124 450.3 502 55.2
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.5e-124 449.1 548 53.3
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.3e-123 446.8 524 54.6
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.6e-123 445.3 548 52.4
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 4.2e-122 442.6 536 55.0
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 4.2e-122 442.6 530 51.3
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 3.6e-121 439.5 570 51.8
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.0e-120 438.0 539 53.2
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.4e-120 437.6 505 53.9
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 3.0e-120 436.4 539 52.9
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 4.0e-120 436.0 521 57.2
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.8e-120 435.3 541 53.8
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 8.9e-120 434.9 546 53.1
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 8.9e-120 434.9 546 53.5
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.5e-119 434.1 532 51.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.0e-119 433.7 536 53.5
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.6e-119 433.3 543 53.0
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 3.4e-119 433.0 546 52.2
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 7.5e-119 431.8 557 49.6
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 3.7e-118 429.5 527 52.8
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.1e-117 427.9 624 47.9
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 5.0e-115 419.1 545 51.9
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.5e-114 417.5 500 52.8
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.5e-114 417.5 505 55.0
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-113 414.5 533 51.8
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.2e-113 414.5 517 54.0
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.2e-113 414.5 485 54.0
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.1e-113 413.7 494 54.7
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 4.7e-113 412.5 500 54.8
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 4.0e-112 409.5 515 53.4
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 5.2e-112 409.1 525 51.2
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.5e-111 407.5 520 53.8
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 7.5e-111 405.2 494 53.8
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 9.8e-111 404.8 537 52.0
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.9e-110 403.3 499 54.1
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 3.7e-110 402.9 542 48.2
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.1e-109 399.4 519 50.9
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 9.2e-109 398.3 515 53.2
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 9.2e-109 398.3 567 47.8
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 7.8e-108 395.2 497 51.1
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 2.3e-107 393.7 525 50.1
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 3.3e-106 389.8 567 47.4
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 7.3e-106 388.7 518 47.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 9.5e-106 388.3 521 52.4
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 2.8e-105 386.7 520 51.2
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.0e-104 382.9 528 47.0
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.2e-103 381.3 538 51.7
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.2e-103 381.3 516 46.7
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.1e-101 374.8 514 47.9
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.2e-101 373.2 524 51.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.7e-100 370.2 539 47.5
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 4.6e-100 369.4 495 49.1
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.7e-99 367.5 506 50.8
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 2.3e-99 367.1 522 47.7
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.0e-99 366.7 419 56.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 3.9e-99 366.3 535 47.1
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.9e-99 366.3 541 48.4
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 2.1e-97 360.5 555 45.2
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.8e-97 360.1 522 48.5
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.6e-97 359.8 485 48.9
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 6.2e-97 359.0 556 49.5
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.3e-96 357.1 559 44.9
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 1.2e-95 354.8 560 45.5
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.4e-95 353.2 525 47.6
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 7.6e-95 352.1 539 44.9
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 9.9e-95 351.7 537 44.7
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 9.9e-95 351.7 424 59.0
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.7e-94 350.9 559 44.7
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.9e-94 350.1 515 46.4
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 3.7e-94 349.7 510 46.1
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 6.4e-94 349.0 537 44.7
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 3.2e-93 346.7 525 45.3
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 9.2e-93 345.1 525 45.0
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.2e-92 344.7 505 50.1
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.6e-92 344.4 501 46.9
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.3e-91 341.3 516 45.0
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-90 338.2 372 54.8
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 4.0e-88 329.7 453 52.5
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.4e-87 326.6 530 43.2
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 4.4e-87 326.2 548 43.8
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 7.6e-87 325.5 548 43.8
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.3e-86 324.7 549 44.1
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 7.1e-85 318.9 506 44.5
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.2e-84 318.2 521 43.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 3.5e-84 316.6 309 67.0
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 5.1e-83 312.8 538 42.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.1e-80 305.1 502 43.8
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 5.3e-80 302.8 543 45.5
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.0e-79 300.8 379 53.8
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 4.4e-79 299.7 378 53.7
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.8e-79 299.3 517 42.9
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 2.2e-78 297.4 507 43.6
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.3e-75 287.3 257 70.8
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.1e-69 268.5 467 41.5
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 5.1e-67 259.6 287 57.5
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.4e-64 251.5 456 40.6
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 3.4e-63 246.9 566 35.9
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 5.8e-63 246.1 246 61.0
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.2e-62 244.2 402 44.3
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 7.1e-61 239.2 419 39.9
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 9.6e-58 228.8 325 48.0
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 5.7e-50 203.0 405 35.8
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.7e-46 191.4 419 37.0
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 2.5e-45 187.6 451 34.6
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 3.6e-44 183.7 439 34.4
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.1e-43 179.9 397 34.3
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.8e-40 171.4 390 34.1
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.3e-38 165.2 384 33.9
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.3e-38 165.2 237 51.9
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 5.0e-38 163.3 479 33.4
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 5.5e-37 159.8 470 33.2
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 9.4e-37 159.1 194 49.5
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.0e-34 151.4 470 31.3
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 6.3e-33 146.4 239 44.4
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.0e-31 141.4 177 52.5
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.0e-31 141.4 411 31.9
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 5.9e-31 139.8 186 45.7
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.2e-28 132.1 206 40.3
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.0e-27 127.1 295 32.9
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 6.3e-25 119.8 306 30.7
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.4e-24 118.6 152 44.1
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.1e-24 117.1 267 33.0
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 5.3e-24 116.7 344 31.7
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 7.0e-24 116.3 153 45.8
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 2.9e-22 110.9 138 49.3
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.8e-22 110.5 191 51.3
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.2e-20 105.5 109 57.8
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 4.7e-20 103.6 102 56.9
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.0e-19 100.9 122 47.5
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 5.5e-13 80.1 112 42.9
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 4.7e-12 77.0 98 50.0
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.7e-09 68.6 94 44.7
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.8e-09 67.8 224 33.5
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.8e-08 65.1 71 47.9
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 7.0e-08 63.2 103 41.7


User provided reference genes

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