Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 5.0e-47 191.4 154 100.0
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 9.3e-25 117.5 156 73.7
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 2.3e-23 112.8 167 67.1
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 2.3e-23 112.8 129 79.1
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 6.6e-23 111.3 158 72.2
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 1.1e-22 110.5 154 73.4
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.9e-22 109.8 124 79.8
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 1.9e-22 109.8 162 69.8
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 1.9e-22 109.8 156 69.2
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 2.5e-22 109.4 125 80.0
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 3.3e-22 109.0 163 67.5
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 5.6e-22 108.2 124 79.0
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 5.6e-22 108.2 67 80.6
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 7.3e-22 107.8 148 70.3
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 7.3e-22 107.8 148 70.9
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 9.6e-22 107.5 162 68.5
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 1.3e-21 107.1 91 81.3
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 2.1e-21 106.3 165 69.7
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 2.1e-21 106.3 150 70.0
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 2.1e-21 106.3 130 75.4
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 2.8e-21 105.9 91 80.2
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 3.6e-21 105.5 157 70.7
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 4.8e-21 105.1 156 71.2
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 6.2e-21 104.8 64 73.4
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 8.1e-21 104.4 162 66.0
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 1.1e-20 104.0 162 64.8
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 1.1e-20 104.0 153 69.3
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 1.4e-20 103.6 164 64.6
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 1.4e-20 103.6 170 63.5
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 1.4e-20 103.6 154 70.8
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 1.8e-20 103.2 150 71.3
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 2.4e-20 102.8 152 67.1
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 4.0e-20 102.1 126 77.8
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 4.0e-20 102.1 154 68.2
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 5.3e-20 101.7 166 66.9
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 5.3e-20 101.7 152 69.1
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 5.3e-20 101.7 146 71.2
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 6.9e-20 101.3 136 75.7
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 9.0e-20 100.9 166 68.1
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 1.2e-19 100.5 166 68.1
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 1.2e-19 100.5 91 76.9
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.2e-19 100.5 168 65.5
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 1.5e-19 100.1 152 69.7
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 1.5e-19 100.1 169 63.9
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 2.0e-19 99.8 152 70.4
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 2.6e-19 99.4 154 70.8
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 2.6e-19 99.4 64 73.4
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 4.4e-19 98.6 154 67.5
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 5.8e-19 98.2 154 67.5
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 7.6e-19 97.8 67 74.6
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 9.9e-19 97.4 138 71.7
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 1.3e-18 97.1 153 64.7
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.3e-18 97.1 136 72.1
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 1.3e-18 97.1 130 70.0
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 1.7e-18 96.7 168 60.7
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 2.2e-18 96.3 154 68.2
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 2.2e-18 96.3 154 68.2
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 2.2e-18 96.3 91 79.1
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 2.2e-18 96.3 155 67.7
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 2.2e-18 96.3 167 61.1
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 2.9e-18 95.9 91 78.0
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 3.8e-18 95.5 154 68.2
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 4.9e-18 95.1 155 67.1
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 4.9e-18 95.1 167 64.7
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 6.4e-18 94.7 154 68.2
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 6.4e-18 94.7 151 68.9
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 6.4e-18 94.7 123 72.4
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 6.4e-18 94.7 90 73.3
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 8.4e-18 94.4 153 65.4
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 8.4e-18 94.4 172 64.5
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 1.4e-17 93.6 150 64.7
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 1.9e-17 93.2 171 64.9
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.4e-17 92.8 149 67.1
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 2.4e-17 92.8 169 65.1
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 2.4e-17 92.8 169 65.1
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 2.4e-17 92.8 88 78.4
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 3.2e-17 92.4 67 71.6
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 3.2e-17 92.4 169 64.5
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 7.1e-17 91.3 154 66.9
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 7.1e-17 91.3 155 66.5
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 7.1e-17 91.3 154 68.8
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 9.3e-17 90.9 166 60.2
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 9.3e-17 90.9 163 62.0
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 1.2e-16 90.5 153 64.1
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 1.6e-16 90.1 163 62.0
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 2.1e-16 89.7 155 65.8
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 2.7e-16 89.4 151 66.9
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 4.6e-16 88.6 125 72.0
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 6.0e-16 88.2 67 67.2
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 6.0e-16 88.2 167 56.9
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 7.9e-16 87.8 63 68.3
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 7.9e-16 87.8 159 64.8
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 1.0e-15 87.4 160 65.6
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 1.0e-15 87.4 67 65.7
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 3.0e-15 85.9 67 65.7
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 3.9e-15 85.5 91 73.6
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 5.1e-15 85.1 163 65.6
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 1.9e-14 83.2 163 60.1
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 3.3e-14 82.4 66 60.6
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 9.6e-14 80.9 163 59.5
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 1.6e-13 80.1 54 70.4
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 2.1e-13 79.7 165 58.8
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 6.9e-12 74.7 89 46.1
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 1.3e-10 70.5 67 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 4.9e-10 68.6 67 56.7
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 4.2e-09 65.5 168 56.0
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 1.6e-08 63.5 67 50.7


User provided reference genes

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