Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 2.1e-91 339.0 165 100.0
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 4.3e-52 208.4 146 70.5
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 3.6e-51 205.3 147 68.7
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.2e-49 200.3 146 64.4
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.2e-49 200.3 146 64.4
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 7.5e-49 197.6 157 61.1
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 4.6e-46 188.3 195 47.7
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 7.8e-46 187.6 143 62.2
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 7.8e-46 187.6 143 62.2
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 7.8e-46 187.6 144 62.5
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 7.8e-46 187.6 153 59.5
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.0e-45 187.2 148 60.8
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.0e-45 187.2 143 61.5
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.3e-45 186.8 145 62.8
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 1.7e-45 186.4 146 63.7
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.9e-45 185.3 143 60.8
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 6.6e-45 184.5 149 61.1
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 8.6e-45 184.1 145 62.8
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 8.6e-45 184.1 145 62.8
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 8.6e-45 184.1 146 59.6
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 8.6e-45 184.1 146 61.0
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.1e-44 183.7 144 61.1
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 1.9e-44 183.0 153 57.5
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 1.9e-44 183.0 144 61.1
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 3.3e-44 182.2 144 60.4
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 5.6e-44 181.4 152 55.9
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 9.5e-44 180.6 146 59.6
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 9.5e-44 180.6 144 60.4
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 2.8e-43 179.1 150 58.0
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 2.8e-43 179.1 144 61.1
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 8.1e-43 177.6 158 57.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.4e-42 176.8 153 57.5
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 2.3e-42 176.0 146 59.6
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 3.1e-42 175.6 149 57.0
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 3.1e-42 175.6 148 56.1
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 3.1e-42 175.6 155 54.2
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.0e-42 175.3 164 57.9
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 5.2e-42 174.9 146 58.9
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 6.8e-42 174.5 158 58.9
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 8.9e-42 174.1 145 59.3
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.2e-41 173.7 150 56.0
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 1.2e-41 173.7 145 58.6
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.5e-41 173.3 143 55.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 2.6e-41 172.6 165 53.3
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 3.4e-41 172.2 145 58.6
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.4e-41 172.2 143 55.9
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 4.4e-41 171.8 143 60.1
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 4.4e-41 171.8 153 57.5
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 4.4e-41 171.8 153 57.5
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.8e-41 171.4 143 58.7
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 7.6e-41 171.0 148 56.1
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 9.9e-41 170.6 146 55.5
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 9.9e-41 170.6 147 55.8
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 1.3e-40 170.2 146 55.5
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 1.3e-40 170.2 146 55.5
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.3e-40 170.2 148 54.7
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 2.2e-40 169.5 155 54.2
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 2.2e-40 169.5 144 56.9
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.4e-39 166.8 144 53.5
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.9e-39 166.4 154 52.6
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.9e-39 166.4 146 54.8
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 2.4e-39 166.0 145 57.2
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 2.4e-39 166.0 145 53.1
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 2.4e-39 166.0 144 55.6
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 2.4e-39 166.0 146 54.8
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.1e-39 165.2 145 53.1
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.2e-38 163.7 153 52.9
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.2e-38 163.7 153 52.9
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.2e-38 163.7 153 52.9
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 3.5e-38 162.2 152 53.3
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 3.5e-38 162.2 164 52.4
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 4.6e-38 161.8 150 52.0
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 6.0e-38 161.4 152 52.6
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 7.8e-38 161.0 150 51.3
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 7.8e-38 161.0 163 50.3
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 1.3e-37 160.2 150 50.7
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 1.3e-37 160.2 150 50.7
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 2.3e-37 159.5 147 51.7
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 3.9e-37 158.7 152 52.0
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 3.9e-37 158.7 155 52.3
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 5.1e-37 158.3 152 51.3
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.5e-36 156.8 163 48.5
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 9.6e-36 154.1 154 52.6
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 2.1e-35 152.9 150 52.7
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 4.7e-35 151.8 89 76.4
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 1.1e-34 150.6 90 76.7
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 5.2e-34 148.3 149 46.3
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.8e-33 144.8 153 49.7
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.7e-32 143.3 153 49.0
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 2.7e-30 136.0 88 70.5
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 7.8e-30 134.4 73 79.5
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.7e-29 133.3 146 45.2
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 3.9e-29 132.1 73 78.1
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.9e-29 132.1 139 45.3
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 5.1e-29 131.7 73 79.5
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 5.1e-29 131.7 75 77.3
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.9e-28 129.8 73 78.1
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.9e-28 129.8 73 78.1
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 5.6e-28 128.3 125 47.2
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 7.3e-28 127.9 73 75.3
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 2.1e-27 126.3 71 76.1
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 2.8e-27 125.9 71 77.5
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.8e-27 125.9 71 77.5
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 2.8e-27 125.9 71 77.5
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.8e-26 123.2 71 74.6
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 2.0e-25 119.8 68 80.9
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 5.8e-25 118.2 80 68.8
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 3.8e-24 115.5 79 68.4
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 3.8e-24 115.5 83 63.9
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 1.4e-23 113.6 139 39.6
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 3.2e-23 112.5 139 39.6
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 5.4e-23 111.7 63 77.8
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 1.6e-22 110.2 99 55.6
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 2.1e-22 109.8 114 47.4
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 2.3e-21 106.3 80 50.0
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 6.9e-18 94.7 74 58.1
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 8.4e-16 87.8 82 51.2
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 4.8e-11 72.0 69 49.3
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 9.0e-10 67.8 69 40.6
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 1.3e-08 63.9 72 41.7


User provided reference genes

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