Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 4.8e-199 697.6 339 100.0
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 4.7e-154 548.1 334 75.4
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.2e-151 539.3 334 75.7
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.3e-148 530.0 338 73.1
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 6.1e-146 521.2 327 73.7
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 2.8e-143 512.3 336 71.1
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.8e-135 485.7 329 70.2
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.4e-134 483.4 332 68.4
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 4.1e-134 481.9 332 68.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 1.6e-130 469.9 327 67.6
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.8e-130 469.2 326 69.0
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 1.0e-129 467.2 325 68.0
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 2.3e-129 466.1 326 68.7
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 8.9e-129 464.2 327 68.8
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.2e-128 463.8 327 68.8
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.2e-128 463.8 321 68.2
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.0e-128 463.0 326 68.4
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.0e-128 463.0 327 68.5
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 5.8e-128 461.5 327 67.9
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.7e-127 459.9 327 67.9
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.7e-127 459.9 327 68.2
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.9e-127 459.1 327 67.3
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 3.7e-127 458.8 320 68.8
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 4.1e-126 455.3 328 68.0
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 9.2e-126 454.1 338 66.6
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.6e-125 453.4 326 66.3
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 4.6e-125 451.8 334 66.2
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 7.8e-125 451.1 319 68.3
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.0e-124 450.7 327 65.4
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 3.9e-124 448.7 321 66.4
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 8.6e-124 447.6 257 82.5
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 8.6e-124 447.6 323 67.5
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.9e-123 446.4 323 65.6
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 4.3e-123 445.3 323 65.9
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 2.1e-122 443.0 327 64.2
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 3.6e-122 442.2 325 65.8
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.4e-121 440.3 331 63.4
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 1.4e-121 440.3 326 66.6
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 5.2e-121 438.3 324 66.7
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 6.8e-121 438.0 320 66.6
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 6.8e-121 438.0 315 65.1
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 6.8e-121 438.0 320 65.3
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 8.9e-121 437.6 324 65.4
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.2e-120 437.2 325 63.7
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.2e-120 437.2 325 64.3
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 1.5e-120 436.8 312 68.6
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.5e-120 436.8 323 65.6
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 2.0e-120 436.4 324 65.1
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 2.6e-120 436.0 328 64.9
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 4.4e-120 435.3 345 60.6
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 5.8e-120 434.9 324 65.7
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.3e-119 433.7 318 64.5
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.2e-119 433.0 321 64.8
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 3.7e-119 432.2 325 63.4
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 6.4e-119 431.4 325 63.1
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 6.4e-119 431.4 325 63.7
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 6.4e-119 431.4 323 64.1
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 8.3e-119 431.0 325 63.4
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.1e-118 430.6 323 65.3
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.4e-118 430.3 321 63.9
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 1.9e-118 429.9 324 65.1
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.9e-118 429.9 326 65.0
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.4e-118 429.5 322 64.3
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.2e-118 429.1 321 64.2
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.2e-117 427.2 324 63.9
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 6.0e-117 424.9 327 60.9
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 7.8e-117 424.5 311 66.6
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 3.0e-116 422.5 315 66.3
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 5.0e-116 421.8 325 63.1
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 5.0e-116 421.8 323 62.2
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 6.6e-116 421.4 327 63.0
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.3e-115 419.1 336 59.8
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.3e-115 419.1 324 62.7
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 3.3e-115 419.1 324 63.0
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.1e-114 416.4 325 61.8
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 2.8e-114 416.0 327 63.3
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 3.6e-114 415.6 325 61.8
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 4.0e-113 412.1 323 61.9
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 4.0e-113 412.1 327 61.5
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 8.9e-113 411.0 269 72.1
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.0e-112 409.8 323 62.8
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 6.4e-111 404.8 302 64.6
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 6.4e-111 404.8 327 61.5
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 8.3e-111 404.4 302 64.2
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.9e-110 403.3 323 60.4
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 2.4e-110 402.9 323 60.7
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 3.2e-110 402.5 327 60.9
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 7.1e-110 401.4 323 60.4
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 9.2e-110 401.0 327 59.9
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 9.2e-110 401.0 323 60.4
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 9.2e-110 401.0 323 60.1
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 2.1e-109 399.8 324 60.2
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.1e-109 399.8 338 58.0
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.7e-109 399.4 323 61.3
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 3.5e-109 399.1 323 59.4
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 3.5e-109 399.1 319 59.2
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 4.6e-109 398.7 323 60.4
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 4.6e-109 398.7 323 59.8
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 1.3e-108 397.1 323 60.1
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 3.0e-108 396.0 323 59.8
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 3.9e-108 395.6 315 62.2
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 8.6e-108 394.4 307 64.2
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.3e-107 392.5 323 60.1
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 5.6e-107 391.7 354 55.1
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.2e-106 390.6 327 58.1
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.4e-105 387.1 311 60.8
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 2.3e-100 369.8 336 55.4
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 2.4e-97 359.8 325 55.4
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.8e-96 355.1 270 64.1
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 2.9e-95 352.8 300 58.0
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.0e-88 330.1 236 66.9
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 4.2e-86 322.4 245 67.3
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.2e-85 320.9 238 63.9
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.2e-85 320.9 223 68.2
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 4.3e-83 312.4 316 48.4
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 6.7e-76 288.5 216 66.7
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.1e-75 287.7 213 65.3
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 8.2e-74 281.6 319 44.8
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.4e-72 276.2 322 44.1
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 5.5e-62 242.3 146 76.0
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.2e-54 216.5 137 73.7
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.4e-43 179.5 136 61.8
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 3.3e-35 153.3 136 55.9
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 5.7e-35 152.5 316 29.1
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 8.3e-34 148.7 206 43.7
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 2.4e-33 147.1 143 51.0
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 5.7e-27 125.9 83 68.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 5.0e-23 112.8 87 63.2
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.5e-14 84.7 100 42.0
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.7e-13 79.7 71 52.1
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.2e-10 70.9 56 58.9
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 1.4e-09 68.2 69 46.4


User provided reference genes

Program Settings