Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 4.4e-53 211.1 109 100.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 4.1e-35 151.4 74 100.0
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.0e-33 146.7 74 93.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.0e-33 146.7 75 93.3
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.7e-33 146.0 74 93.2
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.7e-33 146.0 74 93.2
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.2e-33 145.6 74 95.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 2.2e-33 145.6 74 91.9
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.9e-33 145.2 74 94.6
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.8e-33 144.8 74 93.2
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.8e-33 144.8 74 93.2
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.8e-33 144.8 74 93.2
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 5.0e-33 144.4 74 94.6
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.5e-33 144.1 75 89.3
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-32 143.3 77 89.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-32 143.3 74 91.9
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.1e-32 143.3 74 93.2
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.5e-32 142.9 74 91.9
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-32 142.9 74 91.9
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.5e-32 142.9 74 91.9
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.5e-32 142.9 74 90.5
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-32 142.5 74 91.9
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.9e-32 142.5 74 90.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.9e-32 142.5 74 91.9
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 3.2e-32 141.7 74 91.9
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 3.2e-32 141.7 75 88.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 3.2e-32 141.7 75 86.7
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 3.2e-32 141.7 74 91.9
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 3.2e-32 141.7 74 91.9
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 4.2e-32 141.4 74 87.8
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 4.2e-32 141.4 75 86.7
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 4.2e-32 141.4 75 86.7
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 4.2e-32 141.4 75 86.7
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 5.5e-32 141.0 75 85.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 5.5e-32 141.0 75 85.3
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 5.5e-32 141.0 75 85.3
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 5.5e-32 141.0 75 85.3
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.5e-32 141.0 74 89.2
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.5e-32 141.0 74 89.2
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 5.5e-32 141.0 74 91.9
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.5e-32 141.0 74 90.5
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 5.5e-32 141.0 74 90.5
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 7.2e-32 140.6 75 85.3
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 7.2e-32 140.6 74 90.5
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 7.2e-32 140.6 74 90.5
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 9.4e-32 140.2 74 89.2
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 9.4e-32 140.2 75 85.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 9.4e-32 140.2 75 85.3
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 9.4e-32 140.2 75 85.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 9.4e-32 140.2 74 89.2
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 9.4e-32 140.2 74 87.8
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 9.4e-32 140.2 75 85.3
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 9.4e-32 140.2 74 89.2
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 9.4e-32 140.2 75 85.3
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-31 139.8 75 85.3
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.2e-31 139.8 74 89.2
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.6e-31 139.4 74 90.5
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.6e-31 139.4 75 85.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.6e-31 139.4 74 90.5
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.1e-31 139.0 74 89.2
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.7e-31 138.7 74 87.8
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.7e-31 138.7 74 86.5
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.6e-31 138.3 74 85.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 3.6e-31 138.3 74 87.8
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 3.6e-31 138.3 74 89.2
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 4.7e-31 137.9 75 84.0
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 4.7e-31 137.9 75 84.0
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 4.7e-31 137.9 74 87.8
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 6.1e-31 137.5 106 68.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 6.1e-31 137.5 74 85.1
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 6.1e-31 137.5 74 89.2
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 6.1e-31 137.5 74 87.8
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 6.1e-31 137.5 74 89.2
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 6.1e-31 137.5 74 89.2
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 8.0e-31 137.1 74 86.5
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 8.0e-31 137.1 74 86.5
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.8e-30 136.0 74 83.8
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.3e-30 135.6 74 85.1
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 2.3e-30 135.6 74 90.5
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 2.3e-30 135.6 74 87.8
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.0e-30 135.2 74 89.2
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 3.0e-30 135.2 74 89.2
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 5.2e-30 134.4 74 85.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 5.2e-30 134.4 74 87.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.2e-30 134.4 74 83.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 8.8e-30 133.7 74 83.8
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 8.8e-30 133.7 74 83.8
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 8.8e-30 133.7 74 85.1
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 8.8e-30 133.7 74 83.8
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.2e-29 133.3 74 85.1
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.2e-29 133.3 74 83.8
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.2e-29 133.3 74 82.4
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.5e-29 132.9 74 82.4
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.0e-29 132.5 74 82.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.0e-29 132.5 74 85.1
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 2.0e-29 132.5 74 85.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.6e-29 132.1 74 81.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 2.6e-29 132.1 74 81.1
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.6e-29 132.1 74 81.1
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.4e-29 131.3 74 82.4
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.7e-29 131.0 75 78.7
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 5.7e-29 131.0 74 81.1
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 5.7e-29 131.0 74 82.4
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 7.5e-29 130.6 74 82.4
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-28 129.8 74 79.7
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-28 129.8 74 79.7
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.3e-28 129.8 74 81.1
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 2.8e-28 128.6 74 81.1
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.8e-28 128.6 74 81.1
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.7e-28 128.3 74 77.0
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 3.7e-28 128.3 74 77.0
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 3.7e-28 128.3 74 78.4
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 4.8e-28 127.9 74 75.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 4.8e-28 127.9 74 78.4
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.8e-28 127.9 74 77.0
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 6.3e-28 127.5 74 75.7
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 6.3e-28 127.5 84 73.8
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 8.3e-28 127.1 74 77.0
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 8.3e-28 127.1 74 78.4
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-27 126.7 74 77.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-27 126.7 74 77.0
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.1e-27 126.7 74 79.7
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.1e-27 126.7 74 79.7
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.4e-27 126.3 74 79.7
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.8e-27 125.9 74 75.7
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.1e-27 125.2 74 77.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.1e-27 125.2 74 77.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 9.1e-27 123.6 74 79.7
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.6e-26 122.9 74 75.7
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.6e-26 122.9 75 72.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.7e-26 122.1 74 75.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 2.7e-26 122.1 74 78.4
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 5.9e-26 120.9 74 77.0
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 5.9e-26 120.9 93 71.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 7.7e-26 120.6 85 72.9
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-24 116.7 74 75.7
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.5e-24 116.3 74 74.3
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 5.5e-24 114.4 74 73.0
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 2.1e-23 112.5 71 80.3
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 2.8e-23 112.1 64 84.4
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 4.7e-23 111.3 60 88.3
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.4e-22 109.8 74 68.9
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.8e-22 109.4 58 91.4
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 5.2e-22 107.8 75 62.7
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.3e-20 103.2 59 84.7
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 4.1e-19 98.2 74 56.8
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.0e-19 97.4 59 83.1
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.9e-18 94.4 59 76.3
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 2.5e-16 89.0 45 91.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-15 86.7 74 50.0
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.3e-14 82.4 74 48.6
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-14 82.4 52 73.1
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-14 82.4 52 73.1
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 4.0e-14 81.6 42 88.1
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 5.2e-14 81.3 42 85.7
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 7.8e-10 67.4 33 93.9
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 5.0e-09 64.7 33 90.9
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.9e-08 62.8 69 52.2
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.5e-08 62.4 100 46.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.3e-08 60.8 69 52.2
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 2.8e-07 58.9 36 72.2
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 4.7e-07 58.2 40 65.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.3e-06 55.8 34 70.6


User provided reference genes

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