Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 9.6e-127 457.2 301 100.0
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 3.8e-83 312.4 222 73.0
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 1.5e-82 310.5 247 66.8
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 1.5e-82 310.5 260 68.1
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 1.2e-81 307.4 245 70.6
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 4.7e-81 305.4 253 65.6
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 8.0e-81 304.7 223 70.9
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 8.0e-81 304.7 231 69.7
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.8e-80 303.5 253 65.6
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 4.0e-80 302.4 220 70.9
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 5.2e-80 302.0 232 68.1
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 1.2e-79 300.8 199 75.9
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 2.6e-79 299.7 219 70.3
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 2.6e-79 299.7 231 68.4
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 2.6e-79 299.7 244 66.0
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 1.7e-78 297.0 242 64.5
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 2.2e-78 296.6 231 66.7
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 6.3e-78 295.0 248 64.9
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 6.3e-78 295.0 224 67.9
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 1.1e-77 294.3 246 63.0
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 1.4e-77 293.9 222 68.9
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 3.1e-77 292.7 314 54.5
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 7.0e-77 291.6 221 70.6
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 1.6e-76 290.4 221 67.0
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 1.7e-75 287.0 303 55.4
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 8.6e-75 284.6 257 60.7
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 8.6e-75 284.6 222 68.9
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 1.9e-74 283.5 224 67.4
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 2.5e-74 283.1 221 69.2
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 2.5e-74 283.1 261 59.8
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 3.3e-74 282.7 249 63.5
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 1.4e-72 277.3 256 60.9
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 4.0e-72 275.8 223 67.3
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 5.2e-72 275.4 294 53.7
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 5.2e-72 275.4 270 57.8
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 4.4e-71 272.3 219 66.7
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 4.4e-71 272.3 217 65.0
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 2.8e-70 269.6 263 57.8
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 3.7e-70 269.2 224 62.5
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 1.8e-69 266.9 245 59.6
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 3.1e-69 266.2 223 62.8
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 4.1e-69 265.8 260 57.3
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 9.2e-69 264.6 217 65.0
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 9.2e-69 264.6 222 64.4
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 1.2e-68 264.2 259 56.0
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 4.5e-68 262.3 228 61.4
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 7.8e-68 261.5 199 68.8
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.3e-67 260.8 217 63.6
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 2.3e-67 260.0 220 62.3
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 5.0e-67 258.8 256 60.9
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 6.6e-67 258.5 288 59.0
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 8.6e-67 258.1 217 63.1
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 1.5e-66 257.3 224 62.5
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-66 257.3 248 62.5
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 1.9e-66 256.9 224 63.4
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 1.9e-66 256.9 222 63.1
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 2.5e-66 256.5 222 63.1
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 4.3e-66 255.8 228 59.6
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 5.6e-66 255.4 224 62.1
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 5.6e-66 255.4 254 53.9
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 7.3e-66 255.0 223 63.2
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 9.5e-66 254.6 218 63.8
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.2e-65 254.2 220 62.3
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 2.8e-65 253.1 225 62.2
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 3.6e-65 252.7 259 56.0
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 3.6e-65 252.7 223 63.2
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 3.6e-65 252.7 226 61.5
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 3.6e-65 252.7 224 61.6
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 4.7e-65 252.3 223 63.2
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 4.7e-65 252.3 223 63.2
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 8.0e-65 251.5 226 61.1
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 1.4e-64 250.8 224 60.7
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 1.4e-64 250.8 223 59.6
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 1.8e-64 250.4 227 60.4
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 2.3e-64 250.0 223 60.1
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 3.0e-64 249.6 220 59.1
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 8.9e-64 248.1 263 53.6
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 8.9e-64 248.1 257 53.3
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 1.2e-63 247.7 222 61.3
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 2.0e-63 246.9 260 59.6
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 7.5e-63 245.0 217 60.8
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 7.5e-63 245.0 217 60.8
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 9.8e-63 244.6 253 55.3
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 2.2e-62 243.4 204 62.7
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 1.1e-61 241.1 237 57.0
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.4e-61 240.7 221 59.3
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 3.2e-61 239.6 196 64.8
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 1.2e-60 237.7 238 57.1
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 3.6e-57 226.1 268 53.7
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 6.8e-56 221.9 212 55.2
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 1.5e-55 220.7 201 62.7
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 1.5e-55 220.7 214 57.9
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 3.4e-55 219.5 214 59.8
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 3.4e-55 219.5 198 64.1
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 5.8e-55 218.8 216 56.9
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 3.7e-54 216.1 171 66.1
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 1.1e-53 214.5 213 56.8
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 2.1e-52 210.3 212 54.2
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 3.0e-51 206.5 162 67.9
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 3.3e-50 203.0 253 51.4
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 4.3e-50 202.6 124 79.8
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 1.2e-49 201.1 224 56.2
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 6.2e-49 198.7 187 56.1
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 4.9e-46 189.1 198 55.6
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 3.0e-43 179.9 223 51.1
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 9.5e-42 174.9 221 48.9
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 9.5e-42 174.9 120 66.7
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 3.2e-37 159.8 229 43.7
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 3.5e-36 156.4 169 52.1
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 4.6e-36 156.0 235 42.1
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 1.3e-35 154.5 197 50.8
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 2.3e-35 153.7 195 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 2.1e-33 147.1 199 45.2
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 2.1e-33 147.1 88 78.4
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 8.4e-30 135.2 210 39.5
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 1.2e-28 131.3 177 40.7
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 2.5e-26 123.6 72 81.9
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 5.3e-24 115.9 170 42.9
Cfa012883 Carpinus fangiana HOM05D005782 ORTHO05D000300 7.6e-23 112.1 101 60.4
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.6e-20 104.4 164 42.1
AUR62044085 Chenopodium quinoa HOM05D005782 ORTHO05D007436 2.3e-19 100.5 162 42.0
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 8.7e-19 98.6 59 83.1
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 7.4e-18 95.5 216 35.6
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 7.4e-18 95.5 58 82.8
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.4e-16 90.5 57 75.4
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 9.3e-13 78.6 48 81.2
MBI15_g25469_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 1.2e-12 78.2 47 70.2
HPP92_020431 Vanilla planifolia HOM05D005782 ORTHO05D007436 2.6e-07 60.5 44 65.9


User provided reference genes

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