Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A766G13 Lonicera japonica HOM05D000058 ORTHO05D000077 1.1e-33 146.0 68 100.0
Lj5A748T10 Lonicera japonica HOM05D000058 ORTHO05D000077 8.0e-13 76.6 87 54.0
Lj4A51G43 Lonicera japonica HOM05D000058 ORTHO05D000077 1.8e-12 75.5 87 52.9
Lj4A51G44 Lonicera japonica HOM05D000058 ORTHO05D000077 1.8e-12 75.5 69 63.8
Thecc.08G013600 Theobroma cacao HOM05D000058 ORTHO05D000077 2.7e-08 61.6 68 50.0
Dinv35986 Davidia involucrata HOM05D000058 ORTHO05D000077 4.5e-08 60.8 32 84.4
DCAR_022044 Daucus carota HOM05D000058 ORTHO05D000077 5.9e-08 60.5 31 87.1
DCAR_022055 Daucus carota HOM05D000058 ORTHO05D000077 5.9e-08 60.5 31 87.1
Dinv35985 Davidia involucrata HOM05D000058 ORTHO05D000077 5.9e-08 60.5 32 84.4
CSS0016061 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 7.7e-08 60.1 32 84.4
CSS0036254 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 7.7e-08 60.1 32 84.4
CSS0044552 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 7.7e-08 60.1 32 84.4
CSS0045790 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 7.7e-08 60.1 32 84.4
DCAR_022054 Daucus carota HOM05D000058 ORTHO05D000077 7.7e-08 60.1 30 90.0
SalBow6G2228 Salvia bowleyana HOM05D000058 ORTHO05D000077 7.7e-08 60.1 66 51.5
TAR625G0156 Trochodendron aralioides HOM05D000058 ORTHO05D000077 1.3e-07 59.3 32 81.2
Ciclev10003343m.g Citrus clementina HOM05D000058 ORTHO05D000077 1.7e-07 58.9 68 50.0
Oeu007261.1 Olea europaea HOM05D000058 ORTHO05D000077 1.7e-07 58.9 67 47.8
Oeu007268.1 Olea europaea HOM05D000058 ORTHO05D000077 1.7e-07 58.9 66 50.0
Oeu013692.1 Olea europaea HOM05D000058 ORTHO05D000077 1.7e-07 58.9 67 47.8
Oeu013694.1 Olea europaea HOM05D000058 ORTHO05D000077 1.7e-07 58.9 67 47.8
DCAR_022043 Daucus carota HOM05D000058 ORTHO05D000077 2.3e-07 58.5 30 86.7
HanXRQChr03g0072291 Helianthus annuus HOM05D000058 ORTHO05D000077 2.3e-07 58.5 50 58.0
Oeu007263.1 Olea europaea HOM05D000058 ORTHO05D000077 2.3e-07 58.5 66 50.0
PSO541G4705 Papaver somniferum HOM05D000058 ORTHO05D000077 2.3e-07 58.5 30 83.3
PSO541G5897 Papaver somniferum HOM05D000058 ORTHO05D000077 2.3e-07 58.5 31 80.6
PSO675G1511 Papaver somniferum HOM05D000058 ORTHO05D000077 2.3e-07 58.5 31 80.6
Peaxi162Scf00929g00413 Petunia axillaris HOM05D000058 ORTHO05D000077 2.3e-07 58.5 62 48.4
Sopen01g050680 Solanum pennellii HOM05D000058 ORTHO05D000077 2.3e-07 58.5 31 80.6
Nitab4.5_0001899g0020 Nicotiana tabacum HOM05D000058 ORTHO05D000077 2.9e-07 58.2 77 40.3
PSO675G0157 Papaver somniferum HOM05D000058 ORTHO05D000077 3.8e-07 57.8 31 80.6
Peaxi162Scf00566g00220 Petunia axillaris HOM05D000058 ORTHO05D000077 3.8e-07 57.8 32 78.1
Cc01_g06030 Coffea canephora HOM05D000058 ORTHO05D000077 5.0e-07 57.4 64 50.0
Duzib168G0549 Durio zibethinus HOM05D000058 ORTHO05D000077 5.0e-07 57.4 63 46.0
Migut.N01199 Erythranthe guttata HOM05D000058 ORTHO05D000077 5.0e-07 57.4 31 77.4
Lsat_1_v5_gn_9_110220 Lactuca sativa HOM05D000058 ORTHO05D000077 5.0e-07 57.4 28 89.3
Nitab4.5_0004334g0060 Nicotiana tabacum HOM05D000058 ORTHO05D000077 5.0e-07 57.4 84 39.3
Peaxi162Scf00003g01725 Petunia axillaris HOM05D000058 ORTHO05D000077 5.0e-07 57.4 31 77.4
Solyc01g108460.1 Solanum lycopersicum HOM05D000058 ORTHO05D000077 5.0e-07 57.4 84 39.3
PGSC0003DMG402025899 Solanum tuberosum HOM05D000058 ORTHO05D000077 5.0e-07 57.4 84 40.5
CAN.G322.14 Capsicum annuum HOM05D000058 ORTHO05D000077 6.6e-07 57.0 84 38.1
Ciclev10028330m.g Citrus clementina HOM05D000058 ORTHO05D000077 6.6e-07 57.0 68 48.5
Cc01_g06050 Coffea canephora HOM05D000058 ORTHO05D000077 6.6e-07 57.0 64 48.4
Nitab4.5_0001899g0040 Nicotiana tabacum HOM05D000058 ORTHO05D000077 6.6e-07 57.0 65 47.7
CSS0045509 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 8.6e-07 56.6 59 54.2
Cc01_g06070 Coffea canephora HOM05D000058 ORTHO05D000077 8.6e-07 56.6 32 78.1
Hma1.2p1_1589F.1_g292370 Hydrangea macrophylla HOM05D000058 ORTHO05D000077 8.6e-07 56.6 30 80.0
MBI06_g08187_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 8.6e-07 56.6 32 78.1
Nitab4.5_0004334g0080 Nicotiana tabacum HOM05D000058 ORTHO05D000077 8.6e-07 56.6 29 82.8
Oeu009758.1 Olea europaea HOM05D000058 ORTHO05D000077 8.6e-07 56.6 29 82.8
Solyc01g108470.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 8.6e-07 56.6 65 46.2
DCAR_022049 Daucus carota HOM05D000058 ORTHO05D000077 1.1e-06 56.2 30 80.0
Gohir.D05G078900 Gossypium hirsutum HOM05D000058 ORTHO05D000077 1.1e-06 56.2 63 46.0
Gorai.009G080300 Gossypium raimondii HOM05D000058 ORTHO05D000077 1.1e-06 56.2 63 46.0
Nitab4.5_0000068g0410 Nicotiana tabacum HOM05D000058 ORTHO05D000077 1.1e-06 56.2 50 52.0
SalBow6G0219 Salvia bowleyana HOM05D000058 ORTHO05D000077 1.1e-06 56.2 67 46.3
DCAR_003619 Daucus carota HOM05D000058 ORTHO05D000077 1.5e-06 55.8 30 80.0
ECA240G1713 Erigeron canadensis HOM05D000058 ORTHO05D000077 1.5e-06 55.8 28 85.7
HanXRQChr03g0072231 Helianthus annuus HOM05D000058 ORTHO05D000077 1.5e-06 55.8 28 85.7
Cc00_g04910 Coffea canephora HOM05D000058 ORTHO05D000077 1.9e-06 55.5 32 78.1
Cc00_g29090 Coffea canephora HOM05D000058 ORTHO05D000077 1.9e-06 55.5 32 78.1
Cc10_g03960 Coffea canephora HOM05D000058 ORTHO05D000077 1.9e-06 55.5 32 81.2
Lsat_1_v5_gn_4_124900 Lactuca sativa HOM05D000058 ORTHO05D000077 1.9e-06 55.5 64 46.9
Nitab4.5_0004334g0070 Nicotiana tabacum HOM05D000058 ORTHO05D000077 1.9e-06 55.5 29 79.3
Solyc01g108450.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 1.9e-06 55.5 29 79.3
Solyc01g108480.1 Solanum lycopersicum HOM05D000058 ORTHO05D000077 1.9e-06 55.5 29 79.3
PGSC0003DMG403025898 Solanum tuberosum HOM05D000058 ORTHO05D000077 1.9e-06 55.5 29 79.3
vmacro04466 Vaccinium macrocarpon HOM05D000058 ORTHO05D000077 1.9e-06 55.5 60 50.0
Dinv39339 Davidia involucrata HOM05D000058 ORTHO05D000077 2.5e-06 55.1 66 47.0
Lj4A776G58 Lonicera japonica HOM05D000058 ORTHO05D000077 2.5e-06 55.1 64 46.9
RcHm_v2.0_Chr6g0307131 Rosa chinensis HOM05D000058 ORTHO05D000077 2.5e-06 55.1 66 47.0
GSVIVG01031782001 Vitis vinifera HOM05D000058 ORTHO05D000077 2.5e-06 55.1 28 85.7
HanXRQChr03g0072241 Helianthus annuus HOM05D000058 ORTHO05D000077 3.3e-06 54.7 28 82.1
HanXRQChr03g0072271 Helianthus annuus HOM05D000058 ORTHO05D000077 3.3e-06 54.7 28 82.1
HanXRQChr09g0246251 Helianthus annuus HOM05D000058 ORTHO05D000077 3.3e-06 54.7 32 81.2
Lsat_1_v5_gn_4_124221 Lactuca sativa HOM05D000058 ORTHO05D000077 3.3e-06 54.7 64 45.3
Nitab4.5_0005549g0010 Nicotiana tabacum HOM05D000058 ORTHO05D000077 3.3e-06 54.7 47 53.2
Sc21g0000800 Simmondsia chinensis HOM05D000058 ORTHO05D000077 3.3e-06 54.7 52 55.8
TAR381G1640 Trochodendron aralioides HOM05D000058 ORTHO05D000077 3.3e-06 54.7 32 78.1
TAR628G0646 Trochodendron aralioides HOM05D000058 ORTHO05D000077 3.3e-06 54.7 32 78.1
Glyma.13G183700 Glycine max HOM05D000058 ORTHO05D000077 4.2e-06 54.3 65 43.1
Lju926A6T26 Lonicera japonica HOM05D000058 ORTHO05D000077 4.2e-06 54.3 64 46.9
MD08G1106600 Malus domestica HOM05D000058 ORTHO05D000077 4.2e-06 54.3 32 75.0
Prupe.1G441000 Prunus persica HOM05D000058 ORTHO05D000077 4.2e-06 54.3 32 75.0
Actinidia29859 Actinidia chinensis HOM05D000058 ORTHO05D000077 5.5e-06 53.9 32 78.1
Migut.B00316 Erythranthe guttata HOM05D000058 ORTHO05D000077 5.5e-06 53.9 30 76.7
Glyma.07G192700 Glycine max HOM05D000058 ORTHO05D000077 5.5e-06 53.9 65 43.1
HanXRQChr03g0072251 Helianthus annuus HOM05D000058 ORTHO05D000077 5.5e-06 53.9 28 82.1
Lsat_1_v5_gn_5_113280 Lactuca sativa HOM05D000058 ORTHO05D000077 5.5e-06 53.9 32 75.0
ECA240G3940 Erigeron canadensis HOM05D000058 ORTHO05D000077 7.2e-06 53.5 32 78.1
ECA240G4558 Erigeron canadensis HOM05D000058 ORTHO05D000077 7.2e-06 53.5 32 78.1
HanXRQChr03g0068191 Helianthus annuus HOM05D000058 ORTHO05D000077 7.2e-06 53.5 32 78.1
HanXRQChr03g0068271 Helianthus annuus HOM05D000058 ORTHO05D000077 7.2e-06 53.5 32 78.1
HanXRQChr10g0303261 Helianthus annuus HOM05D000058 ORTHO05D000077 7.2e-06 53.5 30 80.0
Lsat_1_v5_gn_4_124781 Lactuca sativa HOM05D000058 ORTHO05D000077 7.2e-06 53.5 64 46.9
MBI02_g23556_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 7.2e-06 53.5 31 71.0
Rhsim07G0231400 Rhododendron simsii HOM05D000058 ORTHO05D000077 7.2e-06 53.5 64 48.4
arahy.Tifrunner.gnm1.ann1.B45QV6 Arachis hypogaea HOM05D000058 ORTHO05D000077 9.5e-06 53.1 66 42.4
arahy.Tifrunner.gnm1.ann1.W04FCI Arachis hypogaea HOM05D000058 ORTHO05D000077 9.5e-06 53.1 66 42.4
Cc00_g14050 Coffea canephora HOM05D000058 ORTHO05D000077 9.5e-06 53.1 51 51.0
ECA240G1923 Erigeron canadensis HOM05D000058 ORTHO05D000077 9.5e-06 53.1 32 78.1
ECA240G4359 Erigeron canadensis HOM05D000058 ORTHO05D000077 9.5e-06 53.1 32 78.1
Gohir.D07G119301 Gossypium hirsutum HOM05D000058 ORTHO05D000077 9.5e-06 53.1 47 55.3
Lsat_1_v5_gn_8_141661 Lactuca sativa HOM05D000058 ORTHO05D000077 9.5e-06 53.1 32 78.1
Sc15g0006390 Simmondsia chinensis HOM05D000058 ORTHO05D000077 9.5e-06 53.1 52 50.0
Solyc04g079330.2 Solanum lycopersicum HOM05D000058 ORTHO05D000077 9.5e-06 53.1 32 71.9
Sopen01g050690 Solanum pennellii HOM05D000058 ORTHO05D000077 9.5e-06 53.1 29 75.9


User provided reference genes

Program Settings