Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 1.2e-118 429.9 213 100.0
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 1.3e-101 373.2 281 71.5
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 8.2e-72 274.2 182 72.0
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 3.1e-71 272.3 182 72.0
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 4.6e-67 258.5 282 50.7
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 2.2e-64 249.6 182 67.6
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 2.4e-63 246.1 182 65.9
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.1e-63 245.7 182 66.5
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.5e-62 243.4 182 65.4
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 1.5e-62 243.4 183 66.1
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.0e-61 240.7 182 64.8
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 1.7e-61 240.0 282 45.7
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 8.5e-61 237.7 183 65.0
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 1.9e-60 236.5 182 64.8
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.5e-60 236.1 166 68.7
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 2.5e-60 236.1 182 62.6
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 4.2e-60 235.3 282 46.1
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 4.2e-60 235.3 180 66.1
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 9.4e-60 234.2 242 52.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 3.6e-59 232.3 182 61.0
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 3.6e-59 232.3 182 65.9
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 4.7e-59 231.9 182 61.0
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 4.7e-59 231.9 182 62.1
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 6.7e-58 228.0 182 62.1
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.6e-57 226.1 214 54.7
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 2.6e-57 226.1 214 54.7
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.3e-57 225.7 214 54.7
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 4.4e-57 225.3 182 61.5
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 7.4e-57 224.6 183 62.8
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 2.8e-56 222.6 182 58.2
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 3.7e-56 222.2 282 43.3
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 4.8e-56 221.9 182 61.5
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 6.3e-56 221.5 283 44.9
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 8.2e-56 221.1 182 62.1
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 2.4e-55 219.5 186 57.5
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 7.0e-55 218.0 181 56.9
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.2e-54 217.2 181 56.9
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.7e-53 213.4 183 60.7
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 3.8e-53 212.2 181 55.2
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.1e-52 210.7 182 56.0
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.5e-52 210.3 282 42.2
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.2e-52 208.8 182 54.9
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 4.2e-52 208.8 182 54.9
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 7.2e-52 208.0 181 56.4
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 7.2e-52 208.0 182 58.8
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 3.6e-51 205.7 171 59.1
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 4.7e-51 205.3 240 48.3
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 4.7e-51 205.3 240 48.3
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 4.0e-50 202.2 182 54.9
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 4.4e-49 198.7 182 54.9
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 9.7e-49 197.6 183 55.2
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 1.7e-48 196.8 207 48.8
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 2.2e-48 196.4 208 49.0
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 2.8e-48 196.1 207 48.8
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 3.7e-48 195.7 173 54.3
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 4.8e-48 195.3 170 54.1
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 6.3e-48 194.9 151 65.6
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 3.1e-47 192.6 173 52.0
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 5.3e-47 191.8 208 47.1
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 7.0e-47 191.4 207 48.3
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 7.0e-47 191.4 151 62.9
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 9.1e-47 191.0 166 54.2
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.2e-46 190.7 174 54.6
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 5.9e-46 188.3 160 55.0
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 7.7e-46 188.0 208 46.6
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 7.7e-46 188.0 208 46.6
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 1.3e-45 187.2 207 44.9
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 2.9e-45 186.0 208 46.6
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 3.8e-45 185.7 208 46.2
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 3.8e-45 185.7 182 52.7
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 5.0e-45 185.3 174 55.2
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 1.1e-44 184.1 208 46.2
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 2.5e-44 183.0 208 47.1
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 4.2e-44 182.2 125 71.2
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 6.1e-43 178.3 181 50.3
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.4e-42 177.2 155 57.4
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.8e-42 176.8 182 47.8
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 6.8e-42 174.9 137 65.0
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 7.5e-41 171.4 207 42.0
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 1.7e-40 170.2 149 57.7
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 8.3e-40 167.9 182 51.6
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.1e-35 153.3 182 47.8
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 2.1e-35 153.3 184 47.3
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 6.1e-35 151.8 281 34.9
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.0e-34 151.0 209 41.6
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.0e-34 151.0 182 46.7
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 2.0e-33 146.7 201 40.8
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 6.3e-32 141.7 175 40.0
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.4e-31 140.6 181 39.8
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 5.4e-31 138.7 282 34.4
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.6e-30 137.1 182 43.4
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.7e-29 133.7 183 42.1
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 6.1e-27 125.2 166 42.2
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 8.0e-27 124.8 170 38.8
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 8.9e-26 121.3 84 71.4
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 9.2e-23 111.3 133 45.1
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 5.9e-22 108.6 183 36.6
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.0e-21 107.8 84 59.5
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.1e-20 104.4 181 34.3
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 2.5e-20 103.2 72 66.7
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.2e-19 100.9 77 63.6
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 1.3e-16 90.9 84 52.4
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 2.2e-16 90.1 182 33.5
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 3.7e-16 89.4 182 31.9
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-15 87.4 133 39.1
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 4.7e-11 72.4 131 30.5
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 3.7e-08 62.8 49 63.3
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.9e-07 60.5 137 28.5
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 2.4e-07 60.1 148 28.4
Gohir.D06G164800 Gossypium hirsutum HOM05D005973 ORTHO05D007285 7.1e-07 58.5 150 24.0
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 7.1e-07 58.5 189 23.8
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 9.2e-07 58.2 144 25.0
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 1.2e-06 57.8 151 25.8
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 1.2e-06 57.8 137 27.0
Thecc.10G003600 Theobroma cacao HOM05D005973 ORTHO05D007285 1.2e-06 57.8 154 22.1
FAN06G2970 Fragaria x ananassa HOM05D005973 ORTHO05D007285 2.1e-06 57.0 151 23.8
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 2.1e-06 57.0 154 24.7
Prupe.2G027000 Prunus persica HOM05D005973 ORTHO05D007285 2.1e-06 57.0 150 25.3
FvH4_7g02120 Fragaria vesca HOM05D005973 ORTHO05D007285 3.5e-06 56.2 151 23.8
Gohir.A06G158900 Gossypium hirsutum HOM05D005973 ORTHO05D007285 3.5e-06 56.2 150 22.7
Cfa002200 Carpinus fangiana HOM05D005973 ORTHO05D007285 4.6e-06 55.8 151 22.5
COL.COLO4_19343 Corchorus olitorius HOM05D005973 ORTHO05D007285 6.0e-06 55.5 150 22.7
Gorai.010G192200 Gossypium raimondii HOM05D005973 ORTHO05D007285 7.8e-06 55.1 150 22.7
Nitab4.5_0004665g0040 Nicotiana tabacum HOM05D001779 ORTHO05D001753 7.8e-06 55.1 120 26.7


User provided reference genes

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