Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 5.2e-176 620.9 312 100.0
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 9.8e-82 307.8 280 61.4
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 7.0e-80 301.6 299 58.9
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 1.0e-78 297.7 231 69.3
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.8e-76 289.7 294 58.5
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 8.9e-75 284.6 270 58.5
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 7.5e-74 281.6 296 54.4
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 8.3e-73 278.1 288 53.8
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 3.5e-71 272.7 256 59.4
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 3.0e-70 269.6 256 56.2
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 6.6e-70 268.5 228 63.6
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 6.6e-70 268.5 229 62.0
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 1.1e-69 267.7 293 53.6
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 7.3e-69 265.0 298 53.0
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 7.3e-69 265.0 298 53.0
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 1.6e-68 263.8 231 60.2
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 2.8e-68 263.1 294 52.7
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 2.8e-68 263.1 294 53.4
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 1.0e-67 261.2 294 52.4
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 1.8e-67 260.4 229 61.6
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 4.0e-67 259.2 242 58.7
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 4.0e-67 259.2 223 62.3
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 1.2e-66 257.7 246 55.7
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 1.5e-66 257.3 269 51.7
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 1.5e-66 257.3 284 50.0
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 4.4e-66 255.8 293 52.9
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 1.3e-65 254.2 251 53.8
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 1.7e-65 253.8 257 55.3
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 1.7e-65 253.8 286 51.0
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 4.9e-65 252.3 238 59.2
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 8.3e-65 251.5 231 57.6
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 1.4e-64 250.8 302 49.0
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 1.9e-64 250.4 213 62.0
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 2.0e-63 246.9 264 52.3
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 2.7e-63 246.5 224 60.3
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 3.5e-63 246.1 227 58.1
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 1.0e-62 244.6 224 60.3
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 2.3e-62 243.4 263 53.2
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 3.9e-62 242.7 224 57.6
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 1.1e-61 241.1 223 59.2
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.5e-61 240.0 267 53.9
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 3.3e-61 239.6 288 48.6
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 1.1e-59 234.6 228 54.8
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 3.2e-56 223.0 233 52.8
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 4.1e-56 222.6 244 50.0
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 1.6e-55 220.7 236 53.0
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 1.6e-55 220.7 224 53.6
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 2.7e-55 219.9 223 54.3
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 7.8e-55 218.4 214 53.7
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 7.8e-55 218.4 238 50.4
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 1.3e-54 217.6 238 50.0
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 1.3e-54 217.6 224 51.3
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 1.3e-54 217.6 224 51.8
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 3.0e-54 216.5 238 49.6
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 3.0e-54 216.5 238 49.6
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 1.9e-53 213.8 228 50.9
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 2.5e-53 213.4 218 57.3
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 7.3e-53 211.8 218 56.9
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 1.6e-52 210.7 269 44.2
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 2.0e-50 203.8 231 49.4
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 7.6e-50 201.8 263 47.1
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 2.1e-47 193.7 179 57.5
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 6.0e-47 192.2 229 48.0
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 1.0e-46 191.4 228 48.7
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 1.9e-45 187.2 223 48.9
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 2.8e-44 183.3 230 45.7
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 2.4e-43 180.3 177 57.1
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 4.4e-42 176.0 221 45.7
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 1.9e-40 170.6 181 51.4
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 1.9e-37 160.6 223 45.7
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 2.2e-33 147.1 209 45.0
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 1.9e-29 134.0 110 60.9
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 1.5e-18 97.8 82 54.9
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 4.5e-18 96.3 238 33.6
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 2.2e-17 94.0 82 54.9
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.8e-14 84.3 219 26.9
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 4.3e-13 79.7 220 27.7
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 6.3e-12 75.9 215 27.0
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 6.3e-12 75.9 215 27.0
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 8.2e-12 75.5 215 27.0
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 1.1e-11 75.1 77 48.1
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 1.8e-11 74.3 206 27.2
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 5.3e-11 72.8 206 26.7
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 1.0e-09 68.6 206 26.7
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 1.0e-09 68.6 206 26.7
C03p75300 Brassica napus HOM05D002526 ORTHO05D010157 9.3e-08 62.0 215 24.7
BolC3t19789H Brassica oleracea HOM05D002526 ORTHO05D010157 2.3e-06 57.4 54 46.3


User provided reference genes

Program Settings