Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.1e-150 536.6 276 100.0
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.6e-104 383.3 266 74.8
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.1e-103 380.6 219 84.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.1e-103 380.6 219 84.9
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.8e-103 379.8 251 77.7
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 4.9e-101 371.7 256 71.5
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.1e-100 370.5 229 79.9
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 3.2e-100 369.0 230 77.4
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 7.0e-100 367.9 224 82.1
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 7.0e-100 367.9 256 73.4
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 9.2e-100 367.5 218 81.7
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.3e-97 359.0 228 74.6
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 9.5e-97 357.5 267 67.4
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.2e-96 357.1 268 67.2
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.2e-96 357.1 260 69.2
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.1e-95 354.0 258 70.2
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.4e-95 353.6 215 79.5
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.4e-95 353.6 215 79.5
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.8e-95 353.2 235 74.9
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.0e-95 352.1 227 78.0
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 4.0e-95 352.1 217 77.0
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 5.2e-95 351.7 232 76.3
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.5e-94 350.1 227 77.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-94 350.1 227 77.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.6e-94 349.4 274 67.5
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 4.4e-94 348.6 257 69.3
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 4.9e-93 345.1 215 77.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 8.3e-93 344.4 216 78.7
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.2e-92 342.4 273 66.3
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.6e-91 340.1 215 76.3
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.1e-91 339.7 213 78.4
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 4.6e-91 338.6 213 77.5
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.6e-91 338.6 251 70.5
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.3e-90 337.0 213 77.9
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.7e-90 336.7 254 68.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.3e-90 336.3 215 75.8
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 3.0e-90 335.9 211 74.9
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.1e-90 335.1 220 74.1
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.1e-90 335.1 233 72.1
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 6.6e-90 334.7 217 74.7
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 8.6e-90 334.3 215 76.7
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-89 334.0 213 76.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.5e-89 333.6 218 75.7
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.5e-89 333.6 214 75.2
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.9e-89 333.2 262 64.9
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 2.5e-89 332.8 225 73.3
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 4.3e-89 332.0 228 70.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 5.6e-89 331.6 214 76.6
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 5.6e-89 331.6 220 73.6
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.6e-88 330.1 220 74.1
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 2.8e-88 329.3 218 73.4
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.6e-88 328.9 216 73.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.6e-88 328.9 221 73.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 6.2e-88 328.2 262 64.5
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 6.2e-88 328.2 231 70.6
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.1e-87 327.4 254 66.1
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.8e-87 326.6 214 73.8
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.8e-87 326.6 215 74.0
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.8e-87 326.6 212 74.1
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.8e-87 326.6 214 74.8
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 2.4e-87 326.2 274 62.8
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 4.0e-87 325.5 213 74.6
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 5.2e-87 325.1 214 74.8
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 6.8e-87 324.7 208 76.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.2e-86 323.9 219 71.7
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.5e-86 323.6 258 65.5
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.5e-86 323.6 217 71.4
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.6e-86 322.8 228 70.6
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.4e-86 322.4 219 71.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 7.6e-86 321.2 219 74.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.7e-85 320.1 251 66.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.7e-85 320.1 252 67.9
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 2.2e-85 319.7 215 74.0
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.2e-85 319.7 218 70.6
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.9e-85 319.3 226 69.5
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 8.4e-85 317.8 218 72.5
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 8.4e-85 317.8 259 65.3
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.1e-84 317.4 252 64.7
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.1e-84 317.4 215 73.0
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.4e-84 317.0 205 73.7
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 2.4e-84 316.2 250 64.4
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.2e-84 315.8 214 71.5
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 5.4e-84 315.1 252 64.3
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 5.4e-84 315.1 254 63.0
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 5.4e-84 315.1 212 70.8
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.4e-84 315.1 215 72.6
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 7.1e-84 314.7 254 65.0
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.7e-83 312.8 225 68.9
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.6e-83 312.0 215 72.6
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 4.6e-83 312.0 215 72.6
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 7.8e-83 311.2 216 70.8
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 7.8e-83 311.2 212 72.2
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 7.8e-83 311.2 216 70.8
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 7.8e-83 311.2 216 70.8
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 7.8e-83 311.2 212 72.2
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 7.8e-83 311.2 229 69.0
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.7e-82 310.1 215 71.6
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 3.0e-82 309.3 212 71.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 3.0e-82 309.3 212 71.7
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 3.9e-82 308.9 210 71.9
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.9e-82 308.9 212 71.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 3.9e-82 308.9 210 71.9
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 3.9e-82 308.9 216 69.0
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.1e-82 308.5 214 69.2
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.5e-81 307.0 215 70.7
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.9e-81 306.6 211 70.1
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.9e-81 306.6 216 68.5
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.3e-81 305.4 210 71.0
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.3e-81 305.4 216 69.4
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 7.3e-81 304.7 247 64.4
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.2e-80 303.9 219 67.1
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.8e-80 302.8 216 71.3
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-80 302.8 216 71.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 8.1e-80 301.2 216 70.8
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-79 300.4 209 71.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.4e-79 299.7 212 68.9
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 9.0e-79 297.7 213 69.5
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 4.4e-78 295.4 213 70.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 5.8e-78 295.0 220 67.7
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.8e-78 295.0 214 67.8
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.6e-78 294.7 213 69.5
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.7e-77 293.5 216 69.4
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.7e-77 293.5 229 63.3
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.7e-77 293.5 229 63.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-77 293.1 206 72.3
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 2.9e-77 292.7 173 83.8
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.8e-77 292.4 207 68.6
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.4e-77 291.2 215 67.4
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.6e-75 287.0 185 76.2
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 4.6e-75 285.4 207 67.6
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.3e-74 283.9 182 75.3
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 3.0e-74 282.7 206 69.4
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.5e-73 279.6 220 60.9
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.5e-73 279.6 220 60.9
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 3.3e-73 279.3 220 61.4
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.6e-73 278.5 220 60.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.6e-73 278.5 220 60.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.6e-73 278.5 220 60.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 9.6e-73 277.7 213 66.7
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.1e-72 276.6 230 61.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.2e-72 275.0 217 61.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-68 264.2 230 61.7
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 7.1e-68 261.5 234 59.0
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 2.1e-67 260.0 231 57.1
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.4e-61 238.0 283 50.9
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 2.4e-60 236.5 202 57.4
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 3.2e-60 236.1 225 54.2
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 3.0e-58 229.6 221 55.7
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 9.0e-55 218.0 132 79.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 2.0e-54 216.9 136 78.7
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 5.8e-54 215.3 136 77.9
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.1e-52 211.1 221 48.9
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.2e-52 209.5 220 51.8
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 4.1e-47 192.6 220 48.2
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.2e-44 182.6 185 54.1
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.1e-43 178.7 175 50.3
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-41 174.1 185 54.1
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.9e-30 135.6 77 87.0
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 3.0e-18 96.7 76 57.9
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.0e-18 96.7 64 65.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.2e-14 84.7 89 48.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.2e-13 80.5 68 55.9
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.9e-13 80.1 72 61.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.9e-12 77.4 68 51.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.8e-08 63.5 81 46.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.1e-07 60.1 34 76.5
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 7.0e-07 58.9 44 63.6


User provided reference genes

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