Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A722T7 Lonicera japonica HOM05D002299 ORTHO05D002358 8.7e-44 179.9 88 100.0
Lj5C741G0 Lonicera japonica HOM05D002299 ORTHO05D002358 4.3e-27 124.4 61 98.4
Thecc.09G190200 Theobroma cacao HOM05D002299 ORTHO05D002358 5.1e-20 100.9 59 76.3
GSVIVG01010913001 Vitis vinifera HOM05D002299 ORTHO05D002358 5.1e-20 100.9 59 78.0
Atru.chr13.2636 Acer truncatum HOM05D002299 ORTHO05D002358 1.9e-19 99.0 59 76.3
Manes.03G073800 Manihot esculenta HOM05D002299 ORTHO05D002358 1.9e-19 99.0 59 74.6
CANSAT01G2683 Cannabis sativa HOM05D002299 ORTHO05D002358 3.3e-19 98.2 57 78.9
Haze_00271 Corylus avellana HOM05D002299 ORTHO05D002358 9.7e-19 96.7 57 77.2
Potri.018G132100 Populus trichocarpa HOM05D002299 ORTHO05D002358 9.7e-19 96.7 59 74.6
CiPaw.06G042600 Carya illinoinensis HOM05D002299 ORTHO05D002358 1.6e-18 95.9 59 72.9
Cpa.g.sc115.48 Carica papaya HOM05D002299 ORTHO05D002358 1.1e-17 93.2 59 71.2
PGR044G1678 Punica granatum HOM05D002299 ORTHO05D002358 1.1e-17 93.2 59 69.5
Duzib150G1653 Durio zibethinus HOM05D002299 ORTHO05D002358 1.4e-17 92.8 59 71.2
Sabra18G0111800 Salix brachista HOM05D002299 ORTHO05D002358 1.4e-17 92.8 59 71.2
Hma1.2p1_0314F.1_g121940 Hydrangea macrophylla HOM05D002299 ORTHO05D002358 2.4e-17 92.0 59 67.8
Dinv02610 Davidia involucrata HOM05D002299 ORTHO05D002358 4.1e-17 91.3 59 66.1
Potri.006G070400 Populus trichocarpa HOM05D002299 ORTHO05D002358 4.1e-17 91.3 59 72.9
Glyma.01G002400 Glycine max HOM05D002299 ORTHO05D002358 5.3e-17 90.9 59 71.2
Lalb_Chr24g0393771 Lupinus albus HOM05D002299 ORTHO05D002358 5.3e-17 90.9 59 69.5
Lj2g0008448 Lotus japonicus HOM05D002299 ORTHO05D002358 6.9e-17 90.5 59 69.5
TWI63G0522 Tripterygium wilfordii HOM05D002299 ORTHO05D002358 6.9e-17 90.5 59 67.8
Ciclev10022647m.g Citrus clementina HOM05D002299 ORTHO05D002358 9.0e-17 90.1 59 67.8
Dinv00318 Davidia involucrata HOM05D002299 ORTHO05D002358 9.0e-17 90.1 59 64.4
TPR.G35489 Trifolium pratense HOM05D002299 ORTHO05D002358 1.2e-16 89.7 59 69.5
Glyma.07G129900 Glycine max HOM05D002299 ORTHO05D002358 1.5e-16 89.4 59 69.5
Glyma.08G028800 Glycine max HOM05D002299 ORTHO05D002358 1.5e-16 89.4 59 69.5
Hma1.2p1_0474F.1_g160615 Hydrangea macrophylla HOM05D002299 ORTHO05D002358 1.5e-16 89.4 58 65.5
Potri.012G049101 Populus trichocarpa HOM05D002299 ORTHO05D002358 1.5e-16 89.4 59 71.2
CARHR103900 Cardamine hirsuta HOM05D002299 ORTHO05D002358 2.0e-16 89.0 59 67.8
TPR.G25451 Trifolium pratense HOM05D002299 ORTHO05D002358 2.0e-16 89.0 59 67.8
Lj4g0009926 Lotus japonicus HOM05D002299 ORTHO05D002358 2.6e-16 88.6 75 57.3
Medtr6g092790 Medicago truncatula HOM05D002299 ORTHO05D002358 2.6e-16 88.6 59 69.5
Psat1g050920 Pisum sativum HOM05D002299 ORTHO05D002358 2.6e-16 88.6 59 69.5
Ca_25627_v3 Cicer arietinum L. HOM05D002299 ORTHO05D002358 4.5e-16 87.8 59 66.1
FAN07G0696 Fragaria x ananassa HOM05D002299 ORTHO05D002358 4.5e-16 87.8 59 64.4
arahy.Tifrunner.gnm1.ann1.N1SVVP Arachis hypogaea HOM05D002299 ORTHO05D002358 5.9e-16 87.4 59 67.8
arahy.Tifrunner.gnm1.ann1.XYC619 Arachis hypogaea HOM05D002299 ORTHO05D002358 5.9e-16 87.4 59 67.8
CsaV3_1G032150 Cucumis sativus L. HOM05D002299 ORTHO05D002358 5.9e-16 87.4 59 66.1
MELO3C017400.2 Cucumis melo HOM05D002299 ORTHO05D002358 7.7e-16 87.0 59 64.4
ClCG06G013940 Citrullus lanatus HOM05D002299 ORTHO05D002358 1.0e-15 86.7 59 64.4
Prupe.1G066500 Prunus persica HOM05D002299 ORTHO05D002358 1.0e-15 86.7 59 64.4
Rhsim01G0112100 Rhododendron simsii HOM05D002299 ORTHO05D002358 1.0e-15 86.7 59 62.7
vmacro20775 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 1.0e-15 86.7 59 62.7
Aa31sc441G40 Aethionema arabicum HOM05D002299 ORTHO05D002358 1.3e-15 86.3 59 66.1
Carub.0003s2732 Capsella rubella HOM05D002299 ORTHO05D002358 1.3e-15 86.3 59 67.8
MD13G1235500 Malus domestica HOM05D002299 ORTHO05D002358 1.3e-15 86.3 59 64.4
MD16G1240200 Malus domestica HOM05D002299 ORTHO05D002358 1.3e-15 86.3 59 64.4
Nn8g41001 Nelumbo nucifera HOM05D002299 ORTHO05D002358 1.3e-15 86.3 59 62.7
Lsat_1_v5_gn_7_57841 Lactuca sativa HOM05D002299 ORTHO05D002358 1.7e-15 85.9 76 51.3
Eucgr.L01776 Eucalyptus grandis HOM05D002299 ORTHO05D002358 2.2e-15 85.5 59 61.0
FvH4_4g06380 Fragaria vesca HOM05D002299 ORTHO05D002358 2.2e-15 85.5 59 62.7
FAN17G1324 Fragaria x ananassa HOM05D002299 ORTHO05D002358 2.2e-15 85.5 59 62.7
FAN22G1906 Fragaria x ananassa HOM05D002299 ORTHO05D002358 2.2e-15 85.5 59 62.7
RcHm_v2.0_Chr4g0398131 Rosa chinensis HOM05D002299 ORTHO05D002358 2.2e-15 85.5 59 62.7
THA.LOC104815321 Tarenaya hassleriana HOM05D002299 ORTHO05D002358 3.8e-15 84.7 59 66.1
AL3G43890 Arabidopsis lyrata HOM05D002299 ORTHO05D002358 6.5e-15 84.0 59 64.4
AT2G06925 Arabidopsis thaliana HOM05D002299 ORTHO05D002358 6.5e-15 84.0 59 64.4
PSO144G0139 Papaver somniferum HOM05D002299 ORTHO05D002358 6.5e-15 84.0 77 50.6
PSO325G0017 Papaver somniferum HOM05D002299 ORTHO05D002358 6.5e-15 84.0 77 50.6
THA.LOC104808905 Tarenaya hassleriana HOM05D002299 ORTHO05D002358 6.5e-15 84.0 59 62.7
vmacro20773 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 6.5e-15 84.0 59 61.0
Eucgr.C00541 Eucalyptus grandis HOM05D002299 ORTHO05D002358 8.5e-15 83.6 59 59.3
Gohir.A05G001700 Gossypium hirsutum HOM05D002299 ORTHO05D002358 8.5e-15 83.6 59 59.3
Gohir.D05G002000 Gossypium hirsutum HOM05D002299 ORTHO05D002358 8.5e-15 83.6 59 61.0
Gorai.009G001900 Gossypium raimondii HOM05D002299 ORTHO05D002358 8.5e-15 83.6 59 61.0
Sc14g0001400 Simmondsia chinensis HOM05D002299 ORTHO05D002358 8.5e-15 83.6 59 61.0
HanXRQChr14g0437451 Helianthus annuus HOM05D002299 ORTHO05D002358 1.9e-14 82.4 76 47.4
Hund09048 Selenicereus undatus HOM05D002299 ORTHO05D002358 1.9e-14 82.4 53 66.0
MBI12_g05371_MAGBIO Magnolia biondii HOM05D002299 ORTHO05D002358 3.2e-14 81.6 59 61.0
VMungo0464G1047 Vigna mungo HOM05D002299 ORTHO05D002358 3.2e-14 81.6 59 64.4
Aqoxy7G02715 Aquilegia oxysepala HOM05D002299 ORTHO05D002358 4.2e-14 81.3 77 51.9
A05p18240 Brassica napus HOM05D002299 ORTHO05D002358 4.2e-14 81.3 59 61.0
C06p14970 Brassica napus HOM05D002299 ORTHO05D002358 4.2e-14 81.3 59 61.0
BolC6t36674H Brassica oleracea HOM05D002299 ORTHO05D002358 4.2e-14 81.3 59 61.0
BraA05t20719Z Brassica rapa HOM05D002299 ORTHO05D002358 4.2e-14 81.3 59 61.0
AUR62021334 Chenopodium quinoa HOM05D002299 ORTHO05D002358 4.2e-14 81.3 59 62.7
Phvul.004G177100 Phaseolus vulgaris HOM05D002299 ORTHO05D002358 4.2e-14 81.3 59 64.4
Sp3g24920 Schrenkiella parvula HOM05D002299 ORTHO05D002358 5.5e-14 80.9 59 61.0
Eucgr.C00294 Eucalyptus grandis HOM05D002299 ORTHO05D002358 7.2e-14 80.5 59 61.0
BcaB02g10918 Brassica carinata HOM05D002299 ORTHO05D002358 9.4e-14 80.1 59 61.0
AUR62033249 Chenopodium quinoa HOM05D002299 ORTHO05D002358 9.4e-14 80.1 59 61.0
Thhalv10002685m.g Eutrema salsugineum HOM05D002299 ORTHO05D002358 9.4e-14 80.1 59 61.0
CSS0008405 Camellia sinensis var. sinensis HOM05D002299 ORTHO05D002358 1.2e-13 79.7 59 57.6
Cc06_g22200 Coffea canephora HOM05D002299 ORTHO05D002358 1.6e-13 79.3 56 60.7
TAR383G0293 Trochodendron aralioides HOM05D002299 ORTHO05D002358 1.6e-13 79.3 59 57.6
ECA240G3969 Erigeron canadensis HOM05D002299 ORTHO05D002358 2.1e-13 79.0 76 44.7
ATR0564G112 Amborella trichopoda HOM05D002299 ORTHO05D002358 2.7e-13 78.6 59 59.3
EL10Ac8g18321 Beta vulgaris HOM05D002299 ORTHO05D002358 2.7e-13 78.6 77 51.9
HPP92_009353 Vanilla planifolia HOM05D002299 ORTHO05D002358 2.7e-13 78.6 59 61.0
Nitab4.5_0007054g0010 Nicotiana tabacum HOM05D002299 ORTHO05D002358 3.6e-13 78.2 77 48.1
Sed0009027 Sechium edule HOM05D002299 ORTHO05D002358 4.6e-13 77.8 59 57.6
HanXRQChr03g0067351 Helianthus annuus HOM05D002299 ORTHO05D002358 1.4e-12 76.3 76 44.7
Nitab4.5_0000413g0150 Nicotiana tabacum HOM05D002299 ORTHO05D002358 1.4e-12 76.3 77 46.8
vmacro20774 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 1.4e-12 76.3 59 52.5
CSS0040929 Camellia sinensis var. sinensis HOM05D002299 ORTHO05D002358 1.8e-12 75.9 59 54.2
Medtr8g101550 Medicago truncatula HOM05D002299 ORTHO05D002358 2.3e-12 75.5 69 50.7
QL09p007489 Quercus lobata HOM05D002299 ORTHO05D002358 3.0e-12 75.1 60 55.0
Oeu021033.1 Olea europaea HOM05D002299 ORTHO05D002358 3.9e-12 74.7 57 54.4
Oeu028836.1 Olea europaea HOM05D002299 ORTHO05D002358 3.9e-12 74.7 58 53.4
Peaxi162Scf00320g00715 Petunia axillaris HOM05D002299 ORTHO05D002358 3.9e-12 74.7 77 45.5
Sopen07g005610 Solanum pennellii HOM05D002299 ORTHO05D002358 5.1e-12 74.3 77 45.5
CDE05G2837 Ceratophyllum demersum HOM05D002299 ORTHO05D002358 8.8e-12 73.6 59 52.5
Eucgr.C00463 Eucalyptus grandis HOM05D002299 ORTHO05D002358 1.1e-11 73.2 50 58.0
CDE05G2010 Ceratophyllum demersum HOM05D002299 ORTHO05D002358 3.3e-11 71.6 59 49.2
Oeu036946.1 Olea europaea HOM05D002299 ORTHO05D002358 3.3e-11 71.6 57 54.4
Rhsim01G0112300 Rhododendron simsii HOM05D002299 ORTHO05D002358 3.3e-11 71.6 93 40.9
unitig_746.g26792 Utricularia gibba HOM05D002299 ORTHO05D002358 4.3e-11 71.2 57 50.9
CAN.G35.2 Capsicum annuum HOM05D002299 ORTHO05D002358 7.4e-11 70.5 59 50.8
SalBow5G5168 Salvia bowleyana HOM05D002299 ORTHO05D002358 9.7e-11 70.1 59 50.8
Solyc07g014730.3 Solanum lycopersicum HOM05D002299 ORTHO05D002358 9.7e-11 70.1 77 42.9
PGSC0003DMG400029964 Solanum tuberosum HOM05D002299 ORTHO05D002358 9.7e-11 70.1 77 42.9
DCAR_019830 Daucus carota HOM05D002299 ORTHO05D002358 1.7e-10 69.3 59 54.2
Migut.L01908 Erythranthe guttata HOM05D002299 ORTHO05D002358 4.8e-10 67.8 59 49.2
MSTRG.10459 Avicennia marina HOM05D002299 ORTHO05D002358 8.2e-10 67.0 59 42.4
DCAR_019790 Daucus carota HOM05D002299 ORTHO05D002358 8.2e-10 67.0 59 50.8
Os03g0708000 Oryza sativa ssp. japonica HOM05D002299 ORTHO05D002358 8.2e-10 67.0 59 52.5
Rhsim03G0268400 Rhododendron simsii HOM05D002299 ORTHO05D002358 8.2e-10 67.0 57 49.1
Cfa016181 Carpinus fangiana HOM05D002299 ORTHO05D002358 1.1e-09 66.6 57 49.1
SGA_v2.0_scaffold21G09628 Striga asiatica HOM05D002299 ORTHO05D002358 1.4e-09 66.2 59 45.8
Zm00001eb216590 Zea mays HOM05D002299 ORTHO05D002358 2.4e-09 65.5 58 51.7
CiPaw.06G042800 Carya illinoinensis HOM05D002299 ORTHO05D002358 9.1e-09 63.5 53 50.9
vmacro22290 Vaccinium macrocarpon HOM05D002299 ORTHO05D002358 9.1e-09 63.5 57 45.6
Sed0003442 Sechium edule HOM05D002299 ORTHO05D002358 2.0e-08 62.4 61 47.5
CiPaw.06G042900 Carya illinoinensis HOM05D002299 ORTHO05D002358 3.4e-08 61.6 53 49.1
Nn8g41002 Nelumbo nucifera HOM05D002299 ORTHO05D002358 3.4e-08 61.6 59 45.8
SEGI_24817 Sequoiadendron giganteum HOM05D002299 ORTHO05D002358 1.0e-07 60.1 58 44.8
SGA_v2.0_scaffold21G09633 Striga asiatica HOM05D002299 ORTHO05D002358 2.2e-07 58.9 70 38.6
Zm00001eb011380 Zea mays HOM05D002299 ORTHO05D002358 1.1e-06 56.6 57 43.9
Os11g0546600 Oryza sativa ssp. japonica HOM05D002299 ORTHO05D002358 2.5e-06 55.5 63 39.7
Zm00001eb197570 Zea mays HOM05D002299 ORTHO05D002358 4.2e-06 54.7 62 43.5
Eucgr.C00515 Eucalyptus grandis HOM05D002299 ORTHO05D002358 9.4e-06 53.5 39 51.3


User provided reference genes

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