Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 2.7e-49 198.4 100 100.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.8e-30 135.2 129 60.5
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.8e-30 135.2 118 62.7
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 8.1e-30 133.7 115 67.0
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.1e-29 131.7 123 59.3
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.0e-29 131.3 116 63.8
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 4.0e-29 131.3 116 63.8
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 9.0e-29 130.2 116 62.9
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.5e-28 129.4 116 61.2
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 2.6e-28 128.6 115 64.3
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 2.6e-28 128.6 115 64.3
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.4e-28 128.3 116 62.9
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.8e-28 127.5 116 64.7
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 9.9e-28 126.7 116 61.2
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.3e-27 126.3 119 60.5
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.3e-27 126.3 119 60.5
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.3e-27 126.3 116 62.1
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 2.2e-27 125.6 116 62.9
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.9e-27 125.2 116 62.9
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.8e-27 124.8 116 61.2
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.8e-27 124.8 116 62.1
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 4.9e-27 124.4 116 62.1
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 8.4e-27 123.6 116 61.2
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.1e-26 123.2 116 61.2
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 1.1e-26 123.2 142 51.4
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.1e-26 123.2 116 61.2
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.4e-26 122.9 116 61.2
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.4e-26 122.1 115 61.7
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 2.4e-26 122.1 115 61.7
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 3.2e-26 121.7 116 60.3
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 3.2e-26 121.7 116 60.3
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-26 121.7 116 60.3
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 3.2e-26 121.7 116 60.3
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 3.2e-26 121.7 115 61.7
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 4.2e-26 121.3 116 60.3
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.2e-26 121.3 116 60.3
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.2e-26 121.3 116 60.3
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.2e-26 121.3 116 59.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.2e-26 121.3 115 60.9
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.2e-26 121.3 116 59.5
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 7.1e-26 120.6 116 58.6
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 7.1e-26 120.6 116 60.3
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 7.1e-26 120.6 115 60.0
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 9.3e-26 120.2 116 58.6
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 9.3e-26 120.2 116 58.6
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 9.3e-26 120.2 116 58.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 9.3e-26 120.2 116 58.6
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 9.3e-26 120.2 116 58.6
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 9.3e-26 120.2 115 60.9
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 9.3e-26 120.2 116 58.6
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.6e-25 119.4 116 57.8
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.5e-25 118.2 116 56.9
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 4.6e-25 117.9 116 57.8
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 6.0e-25 117.5 115 59.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 6.0e-25 117.5 115 59.1
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 7.8e-25 117.1 115 58.3
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 7.8e-25 117.1 115 58.3
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 7.8e-25 117.1 115 58.3
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 1.0e-24 116.7 115 58.3
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.3e-24 116.3 116 57.8
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.7e-24 115.9 143 49.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.7e-24 115.9 115 57.4
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.3e-24 115.5 115 59.1
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 3.0e-24 115.2 116 56.9
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 3.0e-24 115.2 116 56.9
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.0e-24 115.2 116 56.0
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 3.9e-24 114.8 116 55.2
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.9e-24 114.8 116 54.3
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 5.1e-24 114.4 115 56.5
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 5.1e-24 114.4 116 56.9
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 5.1e-24 114.4 119 57.1
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.1e-23 113.2 98 62.2
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.9e-23 112.5 116 56.9
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.9e-23 112.5 116 56.9
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.6e-23 110.9 115 57.4
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 9.6e-23 110.2 116 51.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 9.6e-23 110.2 116 51.7
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.8e-22 107.8 115 54.8
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.8e-22 107.8 115 54.8
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 8.1e-22 107.1 60 81.7
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 5.3e-21 104.4 138 47.8
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 2.2e-19 99.0 97 54.6
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 3.0e-16 88.6 60 75.0
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 1.9e-15 85.9 61 72.1
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.3e-14 83.2 60 70.0
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.8e-13 79.3 88 53.4
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 2.4e-13 79.0 97 47.4
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 2.4e-13 79.0 97 47.4
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.4e-13 79.0 80 57.5
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 9.0e-13 77.0 81 54.3
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.5e-12 76.3 81 54.3
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.0e-12 75.9 81 54.3
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 2.0e-12 75.9 124 34.7
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 2.0e-12 75.9 75 58.7
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 3.4e-12 75.1 81 55.6
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 4.5e-12 74.7 81 54.3
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 5.8e-12 74.3 86 51.2
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 7.6e-12 73.9 105 46.7
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 7.6e-12 73.9 80 55.0
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.6e-12 73.9 75 60.0
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 7.6e-12 73.9 81 55.6
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.0e-11 73.6 75 58.7
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.2e-11 72.4 75 54.7
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.2e-11 72.4 75 54.7
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.2e-11 72.4 75 54.7
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.2e-11 72.4 75 54.7
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 2.2e-11 72.4 75 57.3
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.9e-11 72.0 87 48.3
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.9e-11 72.0 75 58.7
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.8e-11 71.6 81 53.1
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 4.9e-11 71.2 81 54.3
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 6.5e-11 70.9 75 56.0
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 6.5e-11 70.9 75 56.0
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 8.4e-11 70.5 75 57.3
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 8.4e-11 70.5 81 50.6
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 8.4e-11 70.5 81 50.6
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 8.4e-11 70.5 81 50.6
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.1e-10 70.1 75 57.3
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.4e-10 69.7 92 44.6
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.4e-10 69.7 81 50.6
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.4e-10 69.7 81 50.6
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.9e-10 69.3 75 56.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.9e-10 69.3 83 49.4
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.9e-10 69.3 90 47.8
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 3.2e-10 68.6 75 53.3
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 3.2e-10 68.6 88 46.6
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.2e-10 68.2 37 81.1
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 4.2e-10 68.2 32 93.8
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 7.1e-10 67.4 75 52.0
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 7.1e-10 67.4 75 52.0
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 7.1e-10 67.4 75 52.0
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 7.1e-10 67.4 148 36.5
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 2.1e-09 65.9 86 46.5
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 6.0e-09 64.3 116 39.7
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 7.9e-09 63.9 114 37.7
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.0e-08 63.5 75 49.3
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 3.9e-08 61.6 107 32.7
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 6.7e-08 60.8 28 96.4
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 5.7e-07 57.8 26 96.2
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 7.4e-07 57.4 64 51.6
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.6e-06 56.2 25 100.0
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.6e-06 56.2 25 100.0
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 1.6e-06 56.2 25 100.0
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.6e-06 56.2 25 100.0
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 1.6e-06 56.2 25 100.0
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 1.6e-06 56.2 25 100.0
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 2.1e-06 55.8 25 96.0
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.1e-06 55.8 73 41.1
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 4.8e-06 54.7 76 43.4


User provided reference genes

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