Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 0.0e+00 1513.8 796 100.0
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 3.9e-276 954.9 814 66.1
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.3e-255 886.7 802 64.8
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.1e-254 883.6 802 64.7
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.8e-249 866.3 777 63.8
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 8.5e-247 857.4 829 59.6
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 3.9e-244 848.6 804 61.3
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.8e-241 839.7 841 57.3
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 4.5e-240 835.1 814 58.5
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 3.2e-238 828.9 840 56.5
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 5.5e-238 828.2 836 57.1
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.4e-236 823.5 811 60.4
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 3.0e-236 822.4 840 56.0
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 2.2e-234 816.2 856 54.8
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.8e-234 815.8 836 57.4
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 4.8e-234 815.1 811 60.3
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 6.3e-234 814.7 875 55.3
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.8e-233 813.1 809 58.7
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 9.1e-233 810.8 812 56.3
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 3.4e-232 808.9 843 56.3
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.2e-231 806.2 815 57.4
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.8e-231 805.4 876 54.9
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.1e-230 803.9 810 57.3
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.9e-230 803.1 775 58.8
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.6e-229 800.0 831 56.3
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 7.9e-229 797.7 810 56.0
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 8.2e-226 787.7 813 55.8
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.4e-225 786.9 815 57.4
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.8e-225 786.6 806 56.8
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.2e-224 783.9 855 55.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.2e-224 783.9 817 55.4
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 7.7e-224 781.2 811 57.3
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 2.9e-223 779.2 812 55.5
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.5e-222 776.9 823 55.0
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.2e-221 773.9 801 56.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.6e-221 773.5 808 56.2
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-221 772.7 812 54.7
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.0e-221 771.2 776 56.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.7e-220 768.1 812 54.4
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.4e-219 765.4 813 54.0
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 7.0e-217 758.1 821 55.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 9.1e-217 757.7 845 53.3
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 9.1e-217 757.7 816 57.1
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 1.2e-216 757.3 805 56.4
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.7e-216 756.1 815 56.1
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.5e-216 755.4 772 57.3
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 5.9e-216 755.0 845 53.1
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 7.7e-216 754.6 796 54.5
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.8e-215 752.3 840 54.5
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 5.5e-214 748.4 805 52.5
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 3.6e-213 745.7 825 52.6
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 8.0e-213 744.6 816 54.0
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.0e-212 744.2 823 52.1
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 5.2e-212 741.9 815 54.2
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 7.5e-211 738.0 805 52.8
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.7e-210 736.9 836 53.5
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.7e-210 736.9 742 56.7
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 8.3e-210 734.6 799 51.8
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 7.0e-209 731.5 786 54.2
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.2e-208 730.7 816 54.3
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.5e-206 723.8 821 53.0
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 4.7e-205 718.8 805 53.5
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.2e-203 714.1 828 52.7
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 6.3e-202 708.4 824 51.6
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.1e-201 707.6 802 51.6
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 1.2e-200 704.1 805 53.4
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 7.8e-200 701.4 684 58.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 7.3e-198 694.9 765 53.5
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 2.1e-197 693.3 764 53.8
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.6e-195 686.4 827 50.1
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 3.5e-192 676.0 778 53.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.0e-191 674.5 884 47.4
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.5e-190 669.8 809 49.6
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 9.5e-190 667.9 806 50.4
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 2.8e-189 666.4 809 49.6
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.8e-188 663.7 732 54.2
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-187 661.0 762 51.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-187 661.0 692 54.5
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 2.0e-187 660.2 795 49.1
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 9.8e-187 657.9 810 50.2
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 8.3e-186 654.8 805 48.2
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.4e-185 654.1 801 48.3
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 4.1e-185 652.5 801 50.3
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 4.6e-184 649.0 795 49.2
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.0e-184 648.7 801 48.3
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 7.8e-184 648.3 789 50.3
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.0e-183 647.9 800 49.5
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 3.0e-183 646.4 759 51.4
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.9e-183 646.0 776 52.4
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 3.9e-183 646.0 811 47.3
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 6.6e-183 645.2 641 55.2
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.2e-181 641.0 644 54.8
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 2.6e-179 633.3 796 47.9
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 2.6e-179 633.3 797 48.8
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.9e-177 627.1 817 49.4
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 3.2e-177 626.3 798 48.5
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 9.2e-177 624.8 798 47.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 2.1e-176 623.6 799 47.7
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 4.6e-176 622.5 794 48.5
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 3.0e-175 619.8 800 48.1
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 5.1e-175 619.0 794 48.6
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 3.3e-174 616.3 797 47.6
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 4.3e-174 615.9 794 48.4
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.6e-173 612.8 445 69.2
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.8e-172 610.5 794 48.1
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 3.4e-171 606.3 794 47.6
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 4.6e-168 595.9 797 47.6
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-167 594.0 797 46.7
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-166 590.9 776 49.9
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-164 584.7 712 49.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 7.6e-163 578.6 755 46.5
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.9e-162 576.6 675 48.7
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 3.0e-159 566.6 906 42.3
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.1e-156 558.1 828 43.7
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 4.5e-155 552.7 875 43.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.2e-154 550.4 798 44.7
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 7.4e-142 508.8 795 41.8
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.0e-130 471.9 443 54.6
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.1e-128 464.2 803 40.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 3.6e-128 463.4 517 51.3
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.3e-118 430.3 715 39.3
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.4e-102 376.7 630 38.1
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 7.5e-102 375.9 383 61.9
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.3e-95 354.4 820 34.0
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.0e-95 354.0 299 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 5.0e-90 336.7 480 41.0
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-86 324.7 482 41.1
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-85 320.5 482 40.5
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.3e-85 319.7 481 40.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.5e-78 296.2 435 40.5
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.6e-75 287.0 554 40.4
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.3e-74 285.4 484 36.8
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.3e-74 285.4 484 36.8
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.0e-74 284.3 463 38.4
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.6e-74 282.7 470 38.5
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.9e-73 281.6 483 37.5
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 7.3e-57 226.5 196 54.1
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 8.9e-55 219.5 666 33.9
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.9e-52 211.8 418 41.6
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.5e-41 174.9 203 53.2
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.4e-37 160.2 421 37.5
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 5.5e-28 130.6 89 61.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 1.2e-19 102.8 69 71.0
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.1e-17 96.3 107 46.7
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.7e-17 93.2 208 33.7
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.5e-12 78.6 389 29.0
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 7.9e-11 73.6 66 54.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.9e-11 73.6 66 54.5
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.0e-10 73.2 53 56.6
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.8e-10 72.4 53 60.4
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 5.7e-09 67.4 49 67.3
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.3e-08 66.2 53 56.6
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 9.1e-07 60.1 65 50.8
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.6e-06 58.5 44 59.1


User provided reference genes

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