Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A653G18 Lonicera japonica HOM05D008985 ORTHO05D000222 2.0e-91 339.0 160 100.0
Lj8A600T21 Lonicera japonica HOM05D008985 ORTHO05D000222 9.8e-78 293.5 154 92.2
Lj6A369T4 Lonicera japonica HOM05D008985 ORTHO05D000222 1.1e-65 253.4 154 81.2
Lj6A370T2 Lonicera japonica HOM05D008985 ORTHO05D000222 4.4e-62 241.5 145 80.7
MD11G1169500 Malus domestica HOM05D008985 ORTHO05D000222 3.0e-50 202.2 157 57.3
Lj3A3G7 Lonicera japonica HOM05D008985 ORTHO05D000222 3.3e-49 198.7 156 66.7
Lj3A116T12 Lonicera japonica HOM05D008985 ORTHO05D000222 6.4e-37 157.9 71 100.0
Lju926C6T13 Lonicera japonica HOM05D008985 ORTHO05D000222 1.2e-35 153.7 71 97.2
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 8.7e-34 147.5 154 50.0
Lju2092A2T3 Lonicera japonica HOM05D008985 ORTHO05D000222 1.5e-25 120.2 52 100.0
FvH4_1g01701 Fragaria vesca HOM05D002291 ORTHO05D000222 5.3e-23 111.7 157 40.8
FAN19G1637 Fragaria x ananassa HOM05D002291 ORTHO05D000222 5.3e-23 111.7 157 40.8
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.5e-22 110.2 152 40.1
FAN28G2311 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.5e-22 110.2 148 40.5
FAN26G1277 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.0e-22 109.8 157 40.1
RcHm_v2.0_Chr2g0086631 Rosa chinensis HOM05D002291 ORTHO05D000222 2.0e-22 109.8 157 40.1
Lj5C295T2 Lonicera japonica HOM05D008985 ORTHO05D000222 2.5e-20 102.8 48 91.7
MD03G1062700 Malus domestica HOM05D000514 ORTHO05D000222 6.7e-18 94.7 155 31.0
MD16G1222400 Malus domestica HOM05D000514 ORTHO05D000222 1.6e-16 90.1 157 30.6
MD05G1235500 Malus domestica HOM05D000514 ORTHO05D000222 8.2e-16 87.8 142 32.4
MD16G1275200 Malus domestica HOM05D000514 ORTHO05D000222 1.1e-15 87.4 158 30.4
Lj3A678G12 Lonicera japonica HOM05D008985 ORTHO05D000222 2.6e-14 82.8 44 84.1
MD03G1255700 Malus domestica HOM05D000514 ORTHO05D000222 7.6e-14 81.3 151 30.5
MD04G1142700 Malus domestica HOM05D000514 ORTHO05D000222 1.9e-12 76.6 142 28.9
MD15G1306500 Malus domestica HOM05D000514 ORTHO05D000222 3.2e-12 75.9 142 28.9
Oeu007000.1 Olea europaea HOM05D010861 ORTHO05D000222 3.2e-12 75.9 94 44.7
Prupe.5G201300 Prunus persica HOM05D000115 ORTHO05D003511 3.2e-12 75.9 83 44.6
MD12G1110400 Malus domestica HOM05D000514 ORTHO05D000222 5.5e-12 75.1 142 28.9
TWI39G0695 Tripterygium wilfordii HOM05D002291 ORTHO05D000222 4.6e-11 72.0 153 32.7
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 7.9e-11 71.2 101 32.7
MD02G1196000 Malus domestica HOM05D000514 ORTHO05D000222 1.0e-10 70.9 109 31.2
TWI23G0759 Tripterygium wilfordii HOM05D008985 ORTHO05D000222 3.0e-10 69.3 148 32.4
TWI38G1494 Tripterygium wilfordii HOM05D008985 ORTHO05D000222 3.0e-10 69.3 148 32.4
Oeu062231.1 Olea europaea HOM05D010861 ORTHO05D000222 2.5e-09 66.2 77 46.8
FvH4_1g20522 Fragaria vesca HOM05D000514 ORTHO05D000222 3.3e-09 65.9 158 27.8
FvH4_5g39771 Fragaria vesca HOM05D000514 ORTHO05D000222 5.7e-09 65.1 153 28.8
FAN26G2059 Fragaria x ananassa HOM05D000514 ORTHO05D000222 2.8e-08 62.8 156 27.6
FvH4_6g23171 Fragaria vesca HOM05D000514 ORTHO05D000222 3.7e-08 62.4 156 28.2
FvH4_3g14831 Fragaria vesca HOM05D000514 ORTHO05D000222 4.8e-08 62.0 158 27.8
FAN02G4232 Fragaria x ananassa HOM05D000514 ORTHO05D000222 8.2e-08 61.2 158 27.2
Rhsim09G0074300 Rhododendron simsii HOM05D000791 ORTHO05D000669 1.4e-07 60.5 101 29.7
TPR.G36323 Trifolium pratense HOM05D008291 ORTHO05D003568 4.1e-07 58.9 98 30.6
RcHm_v2.0_Chr1g0329081 Rosa chinensis HOM05D008485 ORTHO05D009647 5.3e-07 58.5 129 26.4
FvH4_6g33400 Fragaria vesca HOM05D000514 ORTHO05D000222 6.9e-07 58.2 158 27.2
FAN21G1076 Fragaria x ananassa HOM05D000514 ORTHO05D000222 6.9e-07 58.2 158 27.2
Lj9A334G22 Lonicera japonica HOM05D008985 ORTHO05D000222 6.9e-07 58.2 35 74.3
Oeu006554.1 Olea europaea HOM05D017951 ORTHO05D020916 6.9e-07 58.2 161 26.1
RcHm_v2.0_Chr6g0264941 Rosa chinensis HOM05D008485 ORTHO05D009647 6.9e-07 58.2 129 26.4
MELO3C031804.2 Cucumis melo HOM05D001963 ORTHO05D001863 9.0e-07 57.8 147 24.5
FvH4_2g01880 Fragaria vesca HOM05D000514 ORTHO05D000222 9.0e-07 57.8 158 26.6
FAN22G1175 Fragaria x ananassa HOM05D002052 ORTHO05D000222 9.0e-07 57.8 156 26.3
FAN07G2085 Fragaria x ananassa HOM05D000514 ORTHO05D000222 1.2e-06 57.4 158 27.8
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 1.2e-06 57.4 69 33.3
FvH4_5g31660 Fragaria vesca HOM05D002052 ORTHO05D000222 1.5e-06 57.0 156 26.9
FAN17G2326 Fragaria x ananassa HOM05D002052 ORTHO05D000222 1.5e-06 57.0 156 27.6
FAN22G1380 Fragaria x ananassa HOM05D002052 ORTHO05D000222 1.5e-06 57.0 156 27.6
FAN26G3191 Fragaria x ananassa HOM05D000514 ORTHO05D000222 1.5e-06 57.0 156 26.3
FAN06G4660 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.6e-06 56.2 156 26.9
MD03G1170400 Malus domestica HOM05D000514 ORTHO05D000222 2.6e-06 56.2 99 30.3
Lsat_1_v5_gn_7_48900 Lactuca sativa HOM05D014621 ORTHO05D015019 3.4e-06 55.8 94 31.9
FAN02G0378 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.5e-06 55.5 156 26.9
FvH4_3g25630 Fragaria vesca HOM05D000514 ORTHO05D000222 5.9e-06 55.1 158 26.6
FvH4_4g09084 Fragaria vesca HOM05D000514 ORTHO05D000222 7.7e-06 54.7 157 27.4
FAN09G3654 Fragaria x ananassa HOM05D002052 ORTHO05D000222 7.7e-06 54.7 156 26.9
FAN15G3643 Fragaria x ananassa HOM05D002052 ORTHO05D000222 7.7e-06 54.7 156 26.3
FAN04G0426 Fragaria x ananassa HOM05D000514 ORTHO05D000222 1.0e-05 54.3 158 27.2
MD11G1167200 Malus domestica HOM05D000514 ORTHO05D000222 1.0e-05 54.3 94 24.5


User provided reference genes

Program Settings