Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A64T49 Lonicera japonica HOM05D002035 ORTHO05D002032 1.5e-45 185.7 83 100.0
Lj9A505T67 Lonicera japonica HOM05D002035 ORTHO05D002032 7.2e-24 113.6 96 52.1
Actinidia08824 Actinidia chinensis HOM05D002035 ORTHO05D002032 8.0e-23 110.2 92 56.5
COL.COLO4_30316 Corchorus olitorius HOM05D002035 ORTHO05D002032 1.4e-22 109.4 82 54.9
CSS0016789 Camellia sinensis var. sinensis HOM05D002035 ORTHO05D002032 1.8e-22 109.0 95 49.5
Potri.001G176800 Populus trichocarpa HOM05D002035 ORTHO05D002032 1.8e-22 109.0 94 52.1
Nn2g11853 Nelumbo nucifera HOM05D002035 ORTHO05D002032 3.0e-22 108.2 101 47.5
Atru.chr1.3214 Acer truncatum HOM05D002035 ORTHO05D002032 1.5e-21 105.9 82 52.4
Potri.003G057700 Populus trichocarpa HOM05D002035 ORTHO05D002032 3.3e-21 104.8 95 48.4
CiPaw.01G241400 Carya illinoinensis HOM05D002035 ORTHO05D002032 5.7e-21 104.0 101 50.5
Gorai.009G131700 Gossypium raimondii HOM05D002035 ORTHO05D002032 9.7e-21 103.2 94 47.9
Atru.chr1.3215 Acer truncatum HOM05D002035 ORTHO05D002032 1.3e-20 102.8 92 50.0
Gohir.A05G126700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 1.3e-20 102.8 94 48.9
Gohir.D05G127600 Gossypium hirsutum HOM05D002035 ORTHO05D002032 1.3e-20 102.8 94 48.9
Aqoxy7G01891 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 2.4e-19 98.6 99 44.4
Ciclev10026432m.g Citrus clementina HOM05D002035 ORTHO05D002032 3.1e-19 98.2 99 43.4
Duzib192G0363 Durio zibethinus HOM05D002035 ORTHO05D002032 7.0e-19 97.1 93 47.3
Thecc.06G081100 Theobroma cacao HOM05D002035 ORTHO05D002032 4.5e-18 94.4 97 45.4
Atru.chr1.3213 Acer truncatum HOM05D002035 ORTHO05D002032 1.0e-17 93.2 91 44.0
Dinv36594 Davidia involucrata HOM05D002035 ORTHO05D002032 2.9e-17 91.7 102 41.2
Migut.I00835 Erythranthe guttata HOM05D002035 ORTHO05D002032 3.8e-17 91.3 91 45.1
ClCG09G002410 Citrullus lanatus HOM05D002035 ORTHO05D002032 1.1e-16 89.7 104 43.3
DCAR_021322 Daucus carota HOM05D002035 ORTHO05D002032 1.1e-16 89.7 95 38.9
QL05p025724 Quercus lobata HOM05D002035 ORTHO05D002032 1.1e-16 89.7 96 43.8
Sabra03G0033200 Salix brachista HOM05D002035 ORTHO05D002032 1.1e-16 89.7 166 30.7
Prupe.3G075500 Prunus persica HOM05D002035 ORTHO05D002032 1.5e-16 89.4 95 46.3
DCAR_011278 Daucus carota HOM05D002035 ORTHO05D002032 1.9e-16 89.0 100 38.0
Lj7A639T57 Lonicera japonica HOM05D002035 ORTHO05D002032 4.2e-16 87.8 112 34.8
Peaxi162Scf00015g00535 Petunia axillaris HOM05D002035 ORTHO05D002032 9.4e-16 86.7 117 34.2
Thecc.09G117000 Theobroma cacao HOM05D002035 ORTHO05D002032 9.4e-16 86.7 94 39.4
Sopen03g038780 Solanum pennellii HOM05D002035 ORTHO05D002032 2.7e-15 85.1 95 38.9
Sed0022414 Sechium edule HOM05D002035 ORTHO05D002032 3.6e-15 84.7 107 41.1
MD17G1198900 Malus domestica HOM05D002035 ORTHO05D002032 4.7e-15 84.3 48 66.7
Manes.04G120300 Manihot esculenta HOM05D002035 ORTHO05D002032 6.1e-15 84.0 98 40.8
ECA234G2382 Erigeron canadensis HOM05D002035 ORTHO05D002032 8.0e-15 83.6 91 37.4
TWI12G0998 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 1.0e-14 83.2 106 35.8
Gohir.D06G057900 Gossypium hirsutum HOM05D002035 ORTHO05D002032 3.0e-14 81.6 94 35.1
Gorai.010G068000 Gossypium raimondii HOM05D002035 ORTHO05D002032 3.0e-14 81.6 94 35.1
Solyc03g119900.4 Solanum lycopersicum HOM05D002035 ORTHO05D002032 3.0e-14 81.6 92 39.1
Gohir.A06G059700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 1.5e-13 79.3 94 34.0
Manes.11G050600 Manihot esculenta HOM05D002035 ORTHO05D002032 1.5e-13 79.3 98 38.8
COL.COLO4_34949 Corchorus olitorius HOM05D002035 ORTHO05D002032 4.4e-13 77.8 92 40.2
PSO063G6019 Papaver somniferum HOM05D002035 ORTHO05D002032 4.4e-13 77.8 89 40.4
Gohir.A08G240401 Gossypium hirsutum HOM05D002035 ORTHO05D002032 9.8e-13 76.6 81 38.3
CAN.G438.100 Capsicum annuum HOM05D002035 ORTHO05D002032 4.8e-12 74.3 94 37.2
Glyma.08G208200 Glycine max HOM05D002035 ORTHO05D002032 4.8e-12 74.3 90 36.7
TPR.G27503 Trifolium pratense HOM05D002035 ORTHO05D002032 4.1e-11 71.2 91 37.4
VMungo0331G0720 Vigna mungo HOM05D002035 ORTHO05D002032 4.1e-11 71.2 91 38.5
PGR102G2476 Punica granatum HOM05D002035 ORTHO05D002032 4.5e-10 67.8 96 37.5
Eucgr.F02570 Eucalyptus grandis HOM05D002035 ORTHO05D002032 5.9e-10 67.4 94 35.1
Lj3g0011923 Lotus japonicus HOM05D002035 ORTHO05D002032 1.3e-09 66.2 101 36.6
Psat7g253600 Pisum sativum HOM05D002035 ORTHO05D002032 2.2e-09 65.5 91 34.1
FAN14G5962 Fragaria x ananassa HOM05D002035 ORTHO05D002032 6.5e-09 63.9 110 37.3
Nitab4.5_0013051g0010 Nicotiana tabacum HOM05D002035 ORTHO05D002032 2.5e-08 62.0 50 48.0
Phvul.010G152100 Phaseolus vulgaris HOM05D002035 ORTHO05D002032 2.5e-08 62.0 91 34.1
Gorai.004G279100 Gossypium raimondii HOM05D002035 ORTHO05D047795 4.2e-08 61.2 79 31.6
FvH4_6g30802 Fragaria vesca HOM05D002035 ORTHO05D002032 9.4e-08 60.1 57 47.4
MBI05_g12591_MAGBIO Magnolia biondii HOM05D002035 ORTHO05D002032 9.4e-08 60.1 100 34.0
MSTRG.24727 Avicennia marina HOM05D002035 ORTHO05D002032 1.2e-07 59.7 104 37.5
CDE10G1332 Ceratophyllum demersum HOM05D002035 ORTHO05D002032 1.2e-07 59.7 86 34.9
Glyma.07G033900 Glycine max HOM05D002035 ORTHO05D002032 1.6e-07 59.3 46 50.0
Psat6g104040 Pisum sativum HOM05D002035 ORTHO05D002032 2.1e-07 58.9 99 33.3
Ca_12159_v3 Cicer arietinum L. HOM05D002035 ORTHO05D002032 3.6e-07 58.2 99 33.3
FvH4_6g30801 Fragaria vesca HOM05D002035 ORTHO05D002032 3.6e-07 58.2 60 46.7
Sc13g0004670 Simmondsia chinensis HOM05D002035 ORTHO05D002032 8.0e-07 57.0 88 34.1
CiPaw.08G124900 Carya illinoinensis HOM05D002035 ORTHO05D002032 1.0e-06 56.6 90 36.7
FAN09G0076 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.4e-06 56.2 93 30.1
FAN14G3418 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.4e-06 56.2 93 30.1
TPR.G25193 Trifolium pratense HOM05D002035 ORTHO05D002032 1.8e-06 55.8 100 32.0
PSO782G4178 Papaver somniferum HOM05D002035 ORTHO05D002032 2.3e-06 55.5 85 35.3
Medtr1g041410 Medicago truncatula HOM05D002035 ORTHO05D002032 3.0e-06 55.1 99 32.3
RcHm_v2.0_Chr3g0451451 Rosa chinensis HOM05D002035 ORTHO05D002032 3.0e-06 55.1 93 32.3
THA.LOC104803053 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 3.0e-06 55.1 87 33.3
CiPaw.07G065300 Carya illinoinensis HOM05D002035 ORTHO05D002032 4.0e-06 54.7 97 34.0
FAN05G0128 Fragaria x ananassa HOM05D002035 ORTHO05D002032 4.0e-06 54.7 93 30.1
Lj6g0008601 Lotus japonicus HOM05D002035 ORTHO05D002032 4.0e-06 54.7 89 32.6
SGA_v2.0_scaffold3661G54375 Striga asiatica HOM05D002035 ORTHO05D002032 5.2e-06 54.3 83 33.7
TPR.G30949 Trifolium pratense HOM05D002035 ORTHO05D002032 5.2e-06 54.3 94 34.0
arahy.Tifrunner.gnm1.ann1.D6QP22 Arachis hypogaea HOM05D002035 ORTHO05D002032 6.8e-06 53.9 89 32.6
arahy.Tifrunner.gnm1.ann1.KCS4U6 Arachis hypogaea HOM05D002035 ORTHO05D002032 6.8e-06 53.9 89 32.6
Cfa006449 Carpinus fangiana HOM05D002035 ORTHO05D002032 6.8e-06 53.9 95 31.6
ECA247G0414 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.8e-06 53.9 89 33.7
FvH4_6g03180 Fragaria vesca HOM05D002035 ORTHO05D002032 6.8e-06 53.9 93 30.1
TWI12G0977 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 6.8e-06 53.9 101 30.7
FAN14G0185 Fragaria x ananassa HOM05D002035 ORTHO05D002032 8.8e-06 53.5 93 30.1
Sabra05G0045600 Salix brachista HOM05D002035 ORTHO05D002032 8.8e-06 53.5 95 29.5
Sabra13G0036700 Salix brachista HOM05D002035 ORTHO05D002032 8.8e-06 53.5 97 29.9
THA.LOC104827557 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 8.8e-06 53.5 87 33.3


User provided reference genes

Program Settings