Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A629T18 Lonicera japonica HOM05D002761 ORTHO05D003351 3.4e-42 174.5 83 100.0
Lj5A669G11 Lonicera japonica HOM05D002761 ORTHO05D003351 4.8e-28 127.5 69 87.0
Lj5A657T12 Lonicera japonica HOM05D002761 ORTHO05D003351 1.6e-26 122.5 64 93.8
Lj5C648G5 Lonicera japonica HOM05D002761 ORTHO05D003351 1.6e-26 122.5 64 93.8
Lj5A633T18 Lonicera japonica HOM05D002761 ORTHO05D003351 3.5e-26 121.3 64 92.2
Lj5A652T14 Lonicera japonica HOM05D002761 ORTHO05D003351 3.5e-26 121.3 64 92.2
Lj5A654G16 Lonicera japonica HOM05D002761 ORTHO05D003351 3.5e-26 121.3 64 92.2
Lj5A658G21 Lonicera japonica HOM05D002761 ORTHO05D003351 3.5e-26 121.3 64 92.2
Lj5A645T12 Lonicera japonica HOM05D002761 ORTHO05D003351 1.0e-25 119.8 64 90.6
Lj5C636G2 Lonicera japonica HOM05D002761 ORTHO05D003351 2.2e-25 118.6 62 95.2
Hund27091 Selenicereus undatus HOM05D002761 ORTHO05D003351 3.2e-24 114.8 63 87.3
SGA_v2.0_scaffold118G32501 Striga asiatica HOM05D002761 ORTHO05D003351 4.2e-24 114.4 63 90.5
Lj8A206G29 Lonicera japonica HOM05D002761 ORTHO05D003351 5.5e-24 114.0 63 88.9
Lj5A650G23 Lonicera japonica HOM05D002761 ORTHO05D003351 7.2e-24 113.6 68 89.7
Oeu021213.2 Olea europaea HOM05D002761 ORTHO05D003351 7.2e-24 113.6 63 88.9
PGR042G3223 Punica granatum HOM05D002761 ORTHO05D003351 9.4e-24 113.2 63 87.3
SalBow7G0542 Salvia bowleyana HOM05D002761 ORTHO05D003351 9.4e-24 113.2 63 88.9
SGA_v2.0_scaffold24G10561 Striga asiatica HOM05D002761 ORTHO05D003351 9.4e-24 113.2 63 88.9
Actinidia23337 Actinidia chinensis HOM05D002761 ORTHO05D003351 1.2e-23 112.8 63 87.3
Ah.05g178240 Amaranthus hybridus HOM05D002761 ORTHO05D003351 1.2e-23 112.8 63 87.3
GSVIVG01034848001 Vitis vinifera HOM05D002761 ORTHO05D003351 1.2e-23 112.8 63 87.3
arahy.Tifrunner.gnm1.ann1.5UEM0D Arachis hypogaea HOM05D002761 ORTHO05D003351 1.6e-23 112.5 63 88.9
arahy.Tifrunner.gnm1.ann1.984TS9 Arachis hypogaea HOM05D002761 ORTHO05D003351 1.6e-23 112.5 63 88.9
CSS0019088 Camellia sinensis var. sinensis HOM05D002761 ORTHO05D003351 1.6e-23 112.5 63 87.3
TWI60G0671 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 1.6e-23 112.5 63 87.3
Dinv15069 Davidia involucrata HOM05D002761 ORTHO05D003351 2.1e-23 112.1 63 87.3
TAR381G1193 Trochodendron aralioides HOM05D002761 ORTHO05D003351 2.1e-23 112.1 63 87.3
vmacro12482 Vaccinium macrocarpon HOM05D002761 ORTHO05D003351 2.1e-23 112.1 63 85.7
Atru.chr13.1730 Acer truncatum HOM05D002761 ORTHO05D003351 2.7e-23 111.7 63 87.3
arahy.Tifrunner.gnm1.ann1.Q9M74Z Arachis hypogaea HOM05D002761 ORTHO05D003351 2.7e-23 111.7 63 87.3
Hma1.2p1_0523F.1_g172030 Hydrangea macrophylla HOM05D002761 ORTHO05D003351 3.6e-23 111.3 63 85.7
Oeu045162.1 Olea europaea HOM05D002761 ORTHO05D003351 3.6e-23 111.3 63 87.3
AUR62004635 Chenopodium quinoa HOM05D002761 ORTHO05D003351 4.7e-23 110.9 63 85.7
Potri.013G111300 Populus trichocarpa HOM05D002761 ORTHO05D003351 6.1e-23 110.5 63 85.7
Atru.chr4.2860 Acer truncatum HOM05D002761 ORTHO05D003351 8.0e-23 110.2 63 85.7
HanXRQChr14g0449031 Helianthus annuus HOM05D002761 ORTHO05D003351 8.0e-23 110.2 65 83.1
TWI34G1193 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 8.0e-23 110.2 63 85.7
unitig_747.g21798 Utricularia gibba HOM05D002761 ORTHO05D003351 8.0e-23 110.2 62 87.1
Cfa015122 Carpinus fangiana HOM05D002761 ORTHO05D003351 1.0e-22 109.8 63 87.3
Rhsim03G0083700 Rhododendron simsii HOM05D002761 ORTHO05D003351 1.0e-22 109.8 63 85.7
Migut.C01266 Erythranthe guttata HOM05D002761 ORTHO05D003351 1.4e-22 109.4 63 85.7
PSO210G0794 Papaver somniferum HOM05D002761 ORTHO05D003351 1.4e-22 109.4 63 84.1
PSO832G2735 Papaver somniferum HOM05D002761 ORTHO05D003351 1.4e-22 109.4 63 84.1
Gohir.A05G250400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 1.8e-22 109.0 63 85.7
Gorai.009G263600 Gossypium raimondii HOM05D002761 ORTHO05D003351 1.8e-22 109.0 63 85.7
Cpa.g.sc66.29 Carica papaya HOM05D002761 ORTHO05D003351 2.3e-22 108.6 63 85.7
Eucgr.F02604 Eucalyptus grandis HOM05D002761 ORTHO05D003351 2.3e-22 108.6 63 82.5
Eucgr.F02738 Eucalyptus grandis HOM05D002761 ORTHO05D003351 2.3e-22 108.6 63 82.5
Eucgr.K02157 Eucalyptus grandis HOM05D002761 ORTHO05D003351 2.3e-22 108.6 63 82.5
Glyma.20G174400 Glycine max HOM05D002761 ORTHO05D003351 2.3e-22 108.6 63 85.7
HanXRQChr09g0263631 Helianthus annuus HOM05D002761 ORTHO05D003351 2.3e-22 108.6 62 83.9
MD10G1052700 Malus domestica HOM05D002761 ORTHO05D003351 2.3e-22 108.6 63 82.5
Ciclev10000691m.g Citrus clementina HOM05D002761 ORTHO05D003351 3.0e-22 108.2 63 84.1
DCAR_001058 Daucus carota HOM05D002761 ORTHO05D003351 3.0e-22 108.2 63 82.5
Sc01g0001830 Simmondsia chinensis HOM05D002761 ORTHO05D003351 3.0e-22 108.2 61 86.9
Aa31LG7G6560 Aethionema arabicum HOM05D002761 ORTHO05D003351 4.0e-22 107.8 63 85.7
Gohir.D05G253400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 4.0e-22 107.8 63 84.1
Lj5A655T26 Lonicera japonica HOM05D002761 ORTHO05D003351 4.0e-22 107.8 57 93.0
Nn5g27660 Nelumbo nucifera HOM05D002761 ORTHO05D003351 4.0e-22 107.8 63 82.5
Thecc.08G185200 Theobroma cacao HOM05D002761 ORTHO05D003351 4.0e-22 107.8 63 85.7
ATR0584G032 Amborella trichopoda HOM05D002761 ORTHO05D003351 5.2e-22 107.5 62 85.5
Aqoxy5G00310 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 5.2e-22 107.5 63 84.1
Lalb_Chr06g0161951 Lupinus albus HOM05D002761 ORTHO05D003351 5.2e-22 107.5 63 84.1
Medtr1g096870 Medicago truncatula HOM05D002761 ORTHO05D003351 5.2e-22 107.5 63 82.5
Phvul.007G088400 Phaseolus vulgaris HOM05D002761 ORTHO05D003351 5.2e-22 107.5 63 85.7
VMungo0720G1634 Vigna mungo HOM05D002761 ORTHO05D003351 5.2e-22 107.5 63 85.7
HanXRQChr15g0490731 Helianthus annuus HOM05D002761 ORTHO05D003351 6.7e-22 107.1 62 83.9
Aqoxy4G00115 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 8.8e-22 106.7 63 84.1
Eucgr.F03976 Eucalyptus grandis HOM05D002761 ORTHO05D003351 8.8e-22 106.7 63 82.5
Glyma.10G217700 Glycine max HOM05D002761 ORTHO05D003351 8.8e-22 106.7 63 84.1
Prupe.6G147900 Prunus persica HOM05D002761 ORTHO05D003351 8.8e-22 106.7 63 81.0
TPR.G15701 Trifolium pratense HOM05D002761 ORTHO05D003351 8.8e-22 106.7 63 82.5
arahy.Tifrunner.gnm1.ann1.8YT8MI Arachis hypogaea HOM05D002761 ORTHO05D003351 1.1e-21 106.3 64 82.8
Thhalv10007128m.g Eutrema salsugineum HOM05D002761 ORTHO05D003351 1.1e-21 106.3 63 84.1
Psat6g173240 Pisum sativum HOM05D002761 ORTHO05D003351 1.1e-21 106.3 63 84.1
Sp1g20170 Schrenkiella parvula HOM05D002761 ORTHO05D003351 1.1e-21 106.3 63 84.1
BcaB03g14191 Brassica carinata HOM05D002761 ORTHO05D003351 1.5e-21 105.9 63 82.5
BcaC06g34983 Brassica carinata HOM05D002761 ORTHO05D003351 1.5e-21 105.9 63 82.5
A07p14260 Brassica napus HOM05D002761 ORTHO05D003351 1.5e-21 105.9 63 82.5
C07p20980 Brassica napus HOM05D002761 ORTHO05D003351 1.5e-21 105.9 63 82.5
BolC7t42629H Brassica oleracea HOM05D002761 ORTHO05D003351 1.5e-21 105.9 63 82.5
BraA07t29183Z Brassica rapa HOM05D002761 ORTHO05D003351 1.5e-21 105.9 63 82.5
COL.COLO4_23637 Corchorus olitorius HOM05D002761 ORTHO05D003351 1.5e-21 105.9 63 84.1
AagrBONN_evm.TU.Sc2ySwM_344.827 Anthoceros agrestis HOM05D002761 ORTHO05D003351 2.0e-21 105.5 63 81.0
A09p42070 Brassica napus HOM05D002761 ORTHO05D003351 2.0e-21 105.5 63 82.5
BolC5t30873H Brassica oleracea HOM05D002761 ORTHO05D003351 2.0e-21 105.5 63 82.5
BraA09t39693Z Brassica rapa HOM05D002761 ORTHO05D003351 2.0e-21 105.5 63 82.5
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 2.6e-21 105.1 62 80.6
QL03p042862 Quercus lobata HOM05D002761 ORTHO05D003351 2.6e-21 105.1 63 84.1
Cc10_g11590 Coffea canephora HOM05D002761 ORTHO05D003351 3.3e-21 104.8 64 79.7
THA.LOC104809739 Tarenaya hassleriana HOM05D002761 ORTHO05D003351 3.3e-21 104.8 63 81.0
HPP92_003659 Vanilla planifolia HOM05D002761 ORTHO05D003351 3.3e-21 104.8 63 77.8
Aqoxy1G03087 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 4.4e-21 104.4 63 82.5
arahy.Tifrunner.gnm1.ann1.3C4BUC Arachis hypogaea HOM05D002761 ORTHO05D003351 4.4e-21 104.4 64 81.2
arahy.Tifrunner.gnm1.ann1.SG3J5R Arachis hypogaea HOM05D002761 ORTHO05D003351 4.4e-21 104.4 64 81.2
CiPaw.05G166400 Carya illinoinensis HOM05D002761 ORTHO05D003351 4.4e-21 104.4 63 82.5
Lsat_1_v5_gn_4_165000 Lactuca sativa HOM05D002761 ORTHO05D003351 4.4e-21 104.4 62 82.3
Lsat_1_v5_gn_6_104880 Lactuca sativa HOM05D002761 ORTHO05D003351 4.4e-21 104.4 62 82.3
Nitab4.5_0000167g0140 Nicotiana tabacum HOM05D002761 ORTHO05D003351 4.4e-21 104.4 63 82.5
CANSAT54G2022 Cannabis sativa HOM05D002761 ORTHO05D003351 5.7e-21 104.0 63 81.0
Carub.0001s2218 Capsella rubella HOM05D002761 ORTHO05D003351 7.5e-21 103.6 63 81.0
CARHR023030 Cardamine hirsuta HOM05D002761 ORTHO05D003351 7.5e-21 103.6 63 81.0
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 7.5e-21 103.6 62 79.0
Lj5g0020162 Lotus japonicus HOM05D002761 ORTHO05D003351 7.5e-21 103.6 62 83.9
Thecc.10G143100 Theobroma cacao HOM05D002761 ORTHO05D003351 7.5e-21 103.6 62 83.9
C05p21800 Brassica napus HOM05D002761 ORTHO05D003351 9.7e-21 103.2 63 81.0
Medtr1g096810 Medicago truncatula HOM05D002761 ORTHO05D003351 9.7e-21 103.2 61 83.6
CDE04G1174 Ceratophyllum demersum HOM05D002761 ORTHO05D003351 1.3e-20 102.8 63 82.5
FvH4_4g33440 Fragaria vesca HOM05D002761 ORTHO05D003351 1.3e-20 102.8 63 79.4
FAN07G1831 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.3e-20 102.8 63 79.4
FAN12G1608 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.3e-20 102.8 63 79.4
FAN22G1178 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.3e-20 102.8 63 79.4
arahy.Tifrunner.gnm1.ann1.BB8XW9 Arachis hypogaea HOM05D002761 ORTHO05D003351 1.7e-20 102.4 64 79.7
FAN17G0376 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.7e-20 102.4 63 77.8
AL1G36200 Arabidopsis lyrata HOM05D002761 ORTHO05D003351 2.2e-20 102.1 63 79.4
Lsat_1_v5_gn_6_104920 Lactuca sativa HOM05D002761 ORTHO05D003351 2.2e-20 102.1 70 72.9
PSO170G5134 Papaver somniferum HOM05D002761 ORTHO05D003351 2.2e-20 102.1 62 80.6
RcHm_v2.0_Chr4g0411681 Rosa chinensis HOM05D002761 ORTHO05D003351 2.2e-20 102.1 63 76.2
PSO063G6902 Papaver somniferum HOM05D002761 ORTHO05D003351 2.8e-20 101.7 62 79.0
Zm00001eb408070 Zea mays HOM05D002761 ORTHO05D003351 2.8e-20 101.7 67 77.6
BcaB08g37366 Brassica carinata HOM05D002761 ORTHO05D003351 3.7e-20 101.3 63 77.8
Lsat_1_v5_gn_3_10980 Lactuca sativa HOM05D000331 ORTHO05D000732 3.7e-20 101.3 62 79.0
Solyc11g018770.3 Solanum lycopersicum HOM05D002761 ORTHO05D003351 3.7e-20 101.3 63 81.0
Sopen11g009830 Solanum pennellii HOM05D002761 ORTHO05D003351 3.7e-20 101.3 63 81.0
Sopen11g009950 Solanum pennellii HOM05D002761 ORTHO05D003351 3.7e-20 101.3 63 81.0
Os12g0171200 Oryza sativa ssp. japonica HOM05D002761 ORTHO05D003351 4.8e-20 100.9 67 76.1
Manes.18G102400 Manihot esculenta HOM05D002761 ORTHO05D003351 6.3e-20 100.5 63 81.0
SHI09025 Sapria himalayana HOM05D002761 ORTHO05D003351 6.3e-20 100.5 62 79.0
A08p03170 Brassica napus HOM05D002761 ORTHO05D003351 8.2e-20 100.1 63 77.8
BraA08t32349Z Brassica rapa HOM05D002761 ORTHO05D003351 8.2e-20 100.1 63 77.8
Lsat_1_v5_gn_4_165020 Lactuca sativa HOM05D002761 ORTHO05D003351 8.2e-20 100.1 70 71.4
Pp3c4_17390 Physcomitrium patens HOM05D002761 ORTHO05D003351 8.2e-20 100.1 63 74.6
PRCOL_00003563 Prasinoderma coloniale HOM05D002761 ORTHO05D003351 8.2e-20 100.1 62 75.8
RcHm_v2.0_Chr4g0442691 Rosa chinensis HOM05D002761 ORTHO05D003351 8.2e-20 100.1 62 79.0
Mapoly0174s0023 Marchantia polymorpha HOM05D002761 ORTHO05D003351 1.1e-19 99.8 63 77.8
AT1G22660 Arabidopsis thaliana HOM05D002761 ORTHO05D003351 1.4e-19 99.4 63 74.6
CAN.G761.16 Capsicum annuum HOM05D002761 ORTHO05D003351 2.4e-19 98.6 63 79.4
CBR_g3548 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-19 98.6 63 77.8
MELO3C019943.2 Cucumis melo HOM05D002761 ORTHO05D003351 4.1e-19 97.8 62 79.0
CsaV3_6G004730 Cucumis sativus L. HOM05D002761 ORTHO05D003351 4.1e-19 97.8 62 79.0
ECA238G1828 Erigeron canadensis HOM05D002761 ORTHO05D003351 4.1e-19 97.8 79 64.6
CARHR163300 Cardamine hirsuta HOM05D002761 ORTHO05D003351 1.2e-18 96.3 62 77.4
Sed0017641 Sechium edule HOM05D002761 ORTHO05D003351 1.2e-18 96.3 62 77.4
ClCG08G008700 Citrullus lanatus HOM05D002761 ORTHO05D003351 2.0e-18 95.5 61 78.7
PSO339G0065 Papaver somniferum HOM05D002761 ORTHO05D003351 3.5e-18 94.7 67 71.6
MCO07G705 Micromonas commoda HOM05D002761 ORTHO05D003351 4.5e-18 94.4 61 70.5
Sed0000900 Sechium edule HOM05D002761 ORTHO05D003351 5.9e-18 94.0 62 75.8
Cre17.g726100 Chlamydomonas reinhardtii HOM05D002761 ORTHO05D003351 1.0e-17 93.2 64 70.3
LjContig00141g0028023 Lotus japonicus HOM05D002761 ORTHO05D003351 2.2e-17 92.0 61 75.4
SMO351G0253 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 2.9e-17 91.7 61 73.8
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 6.5e-17 90.5 66 69.7
RhsimUnG0109800 Rhododendron simsii HOM05D002761 ORTHO05D003351 6.5e-17 90.5 66 69.7
SMO111G0069 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 6.5e-17 90.5 63 73.0
PSO339G2349 Papaver somniferum HOM05D002761 ORTHO05D003351 1.9e-16 89.0 62 72.6
SMO351G0639 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 1.9e-16 89.0 63 73.0
RcHm_v2.0_Chr7g0192731 Rosa chinensis HOM05D002761 ORTHO05D003351 2.5e-16 88.6 61 70.5
Haze_01552 Corylus avellana HOM05D002761 ORTHO05D003351 4.2e-16 87.8 54 81.5
SMO111G0222 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 9.4e-16 86.7 63 71.4
SMO172G0205 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 9.4e-16 86.7 64 70.3
Duzib177G0575 Durio zibethinus HOM05D002761 ORTHO05D003351 1.2e-15 86.3 53 83.0
SEGI_41053 Sequoiadendron giganteum HOM05D002761 ORTHO05D003351 1.6e-15 85.9 51 82.4
Rhsim06G0031300 Rhododendron simsii HOM05D002761 ORTHO05D003351 6.1e-15 84.0 67 62.7
Cfa023620 Carpinus fangiana HOM05D002761 ORTHO05D003351 4.0e-14 81.3 69 60.9
CARHR103970 Cardamine hirsuta HOM05D002761 ORTHO05D003351 9.8e-13 76.6 50 74.0
BcaC07g41804 Brassica carinata HOM05D002761 ORTHO05D003351 1.3e-12 76.3 60 65.0
Lj5A638G8 Lonicera japonica HOM05D002761 ORTHO05D003351 1.3e-12 76.3 44 86.4
Lj4A473G33 Lonicera japonica HOM05D002761 ORTHO05D003351 3.7e-12 74.7 73 57.5
MD05G1045700 Malus domestica HOM05D002761 ORTHO05D003351 8.3e-12 73.6 50 72.0
Lj5A627G15 Lonicera japonica HOM05D002761 ORTHO05D003351 7.0e-11 70.5 44 79.5
AagrBONN_evm.TU.Sc2ySwM_117.3982 Anthoceros agrestis HOM05D002761 ORTHO05D003351 1.2e-10 69.7 51 68.6
EL10Ac1g00094 Beta vulgaris HOM05D002761 ORTHO05D003351 1.2e-10 69.7 60 63.3
Lj5A618G15 Lonicera japonica HOM05D002761 ORTHO05D003351 2.0e-10 68.9 44 77.3
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 1.0e-09 66.6 42 78.6
Nitab4.5_0001579g0100 Nicotiana tabacum HOM05D002761 ORTHO05D003351 1.5e-08 62.8 67 55.2
Peaxi162Scf01013g00232 Petunia axillaris HOM05D002761 ORTHO05D003351 7.2e-08 60.5 37 75.7
BcaC05g24852 Brassica carinata HOM05D002761 ORTHO05D003351 1.6e-07 59.3 68 55.9
C05p08980 Brassica napus HOM05D002761 ORTHO05D003351 1.6e-07 59.3 68 55.9
Lj5C622G3 Lonicera japonica HOM05D002761 ORTHO05D003351 3.6e-07 58.2 35 80.0
HPP92_003668 Vanilla planifolia HOM05D002761 ORTHO05D003351 1.8e-06 55.8 60 50.0
Nitab4.5_0000881g0030 Nicotiana tabacum HOM05D002761 ORTHO05D003351 4.0e-06 54.7 36 69.4


User provided reference genes

Program Settings