Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A627G15 Lonicera japonica HOM05D002761 ORTHO05D003351 1.4e-50 202.6 99 100.0
Lj5A618G15 Lonicera japonica HOM05D002761 ORTHO05D003351 7.0e-34 147.1 74 94.6
Lj5A654G16 Lonicera japonica HOM05D002761 ORTHO05D003351 3.6e-30 134.8 110 66.4
Lj5A658G21 Lonicera japonica HOM05D002761 ORTHO05D003351 4.7e-30 134.4 126 60.3
Lj5A645T12 Lonicera japonica HOM05D002761 ORTHO05D003351 1.4e-29 132.9 110 65.5
Lj5A633T18 Lonicera japonica HOM05D002761 ORTHO05D003351 1.4e-21 106.3 93 63.4
Lj5A657T12 Lonicera japonica HOM05D002761 ORTHO05D003351 1.4e-21 106.3 93 63.4
Lj5C648G5 Lonicera japonica HOM05D002761 ORTHO05D003351 1.4e-21 106.3 93 63.4
Lj5A652T14 Lonicera japonica HOM05D002761 ORTHO05D003351 4.0e-21 104.8 93 62.4
Lj5A655T26 Lonicera japonica HOM05D002761 ORTHO05D003351 9.8e-20 100.1 109 54.1
Lj8A206G29 Lonicera japonica HOM05D002761 ORTHO05D003351 1.1e-18 96.7 95 56.8
Oeu021213.2 Olea europaea HOM05D002761 ORTHO05D003351 3.2e-18 95.1 93 55.9
Lj5A669G11 Lonicera japonica HOM05D002761 ORTHO05D003351 7.0e-18 94.0 89 60.7
CSS0019088 Camellia sinensis var. sinensis HOM05D002761 ORTHO05D003351 3.5e-17 91.7 93 54.8
Migut.C01266 Erythranthe guttata HOM05D002761 ORTHO05D003351 4.6e-17 91.3 93 53.8
Oeu045162.1 Olea europaea HOM05D002761 ORTHO05D003351 4.6e-17 91.3 93 53.8
SGA_v2.0_scaffold118G32501 Striga asiatica HOM05D002761 ORTHO05D003351 4.6e-17 91.3 93 53.8
SGA_v2.0_scaffold24G10561 Striga asiatica HOM05D002761 ORTHO05D003351 4.6e-17 91.3 93 53.8
GSVIVG01034848001 Vitis vinifera HOM05D002761 ORTHO05D003351 1.0e-16 90.1 93 53.8
Dinv15069 Davidia involucrata HOM05D002761 ORTHO05D003351 1.3e-16 89.7 93 53.8
vmacro12482 Vaccinium macrocarpon HOM05D002761 ORTHO05D003351 2.3e-16 89.0 91 54.9
Actinidia23337 Actinidia chinensis HOM05D002761 ORTHO05D003351 3.0e-16 88.6 93 54.8
Rhsim03G0083700 Rhododendron simsii HOM05D002761 ORTHO05D003351 3.9e-16 88.2 93 54.8
SalBow7G0542 Salvia bowleyana HOM05D002761 ORTHO05D003351 6.6e-16 87.4 93 53.8
Hund27091 Selenicereus undatus HOM05D002761 ORTHO05D003351 6.6e-16 87.4 93 51.6
Lj5C636G2 Lonicera japonica HOM05D002761 ORTHO05D003351 8.6e-16 87.0 78 61.5
Glyma.20G174400 Glycine max HOM05D002761 ORTHO05D003351 1.5e-15 86.3 94 53.2
Phvul.007G088400 Phaseolus vulgaris HOM05D002761 ORTHO05D003351 1.5e-15 86.3 94 53.2
Cfa015122 Carpinus fangiana HOM05D002761 ORTHO05D003351 2.5e-15 85.5 94 52.1
Prupe.6G147900 Prunus persica HOM05D002761 ORTHO05D003351 3.3e-15 85.1 95 49.5
QL03p042862 Quercus lobata HOM05D002761 ORTHO05D003351 3.3e-15 85.1 94 52.1
Ciclev10000691m.g Citrus clementina HOM05D002761 ORTHO05D003351 4.3e-15 84.7 93 51.6
TAR381G1193 Trochodendron aralioides HOM05D002761 ORTHO05D003351 4.3e-15 84.7 91 51.6
arahy.Tifrunner.gnm1.ann1.5UEM0D Arachis hypogaea HOM05D002761 ORTHO05D003351 5.6e-15 84.3 94 52.1
arahy.Tifrunner.gnm1.ann1.984TS9 Arachis hypogaea HOM05D002761 ORTHO05D003351 5.6e-15 84.3 94 52.1
Glyma.10G217700 Glycine max HOM05D002761 ORTHO05D003351 5.6e-15 84.3 94 52.1
Aqoxy5G00310 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 7.3e-15 84.0 124 45.2
Cpa.g.sc66.29 Carica papaya HOM05D002761 ORTHO05D003351 7.3e-15 84.0 93 51.6
VMungo0720G1634 Vigna mungo HOM05D002761 ORTHO05D003351 7.3e-15 84.0 94 52.1
arahy.Tifrunner.gnm1.ann1.Q9M74Z Arachis hypogaea HOM05D002761 ORTHO05D003351 9.5e-15 83.6 94 51.1
HanXRQChr09g0263631 Helianthus annuus HOM05D002761 ORTHO05D003351 9.5e-15 83.6 93 48.4
TWI60G0671 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 9.5e-15 83.6 91 52.7
Aa31LG7G6560 Aethionema arabicum HOM05D002761 ORTHO05D003351 1.2e-14 83.2 91 51.6
TPR.G15701 Trifolium pratense HOM05D002761 ORTHO05D003351 1.2e-14 83.2 94 51.1
Atru.chr13.1730 Acer truncatum HOM05D002761 ORTHO05D003351 2.1e-14 82.4 93 50.5
Thecc.08G185200 Theobroma cacao HOM05D002761 ORTHO05D003351 2.1e-14 82.4 93 51.6
MD10G1052700 Malus domestica HOM05D002761 ORTHO05D003351 2.8e-14 82.0 95 47.4
SHI09025 Sapria himalayana HOM05D002761 ORTHO05D003351 2.8e-14 82.0 93 49.5
CANSAT54G2022 Cannabis sativa HOM05D002761 ORTHO05D003351 3.6e-14 81.6 94 50.0
Eucgr.F02738 Eucalyptus grandis HOM05D002761 ORTHO05D003351 3.6e-14 81.6 92 50.0
Nn5g27660 Nelumbo nucifera HOM05D002761 ORTHO05D003351 3.6e-14 81.6 93 50.5
unitig_747.g21798 Utricularia gibba HOM05D002761 ORTHO05D003351 3.6e-14 81.6 91 51.6
Ah.05g178240 Amaranthus hybridus HOM05D002761 ORTHO05D003351 4.7e-14 81.3 93 49.5
Nitab4.5_0000167g0140 Nicotiana tabacum HOM05D002761 ORTHO05D003351 4.7e-14 81.3 124 43.5
Peaxi162Scf01013g00232 Petunia axillaris HOM05D002761 ORTHO05D003351 4.7e-14 81.3 74 59.5
Atru.chr4.2860 Acer truncatum HOM05D002761 ORTHO05D003351 6.2e-14 80.9 93 49.5
ATR0584G032 Amborella trichopoda HOM05D002761 ORTHO05D003351 6.2e-14 80.9 93 49.5
Aqoxy1G03087 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 8.1e-14 80.5 89 50.6
Medtr1g096870 Medicago truncatula HOM05D002761 ORTHO05D003351 8.1e-14 80.5 94 50.0
Sp1g20170 Schrenkiella parvula HOM05D002761 ORTHO05D003351 8.1e-14 80.5 91 49.5
CiPaw.05G166400 Carya illinoinensis HOM05D002761 ORTHO05D003351 1.1e-13 80.1 94 50.0
Aqoxy4G00115 Aquilegia oxysepala HOM05D002761 ORTHO05D003351 1.4e-13 79.7 120 44.2
Eucgr.F02604 Eucalyptus grandis HOM05D002761 ORTHO05D003351 1.4e-13 79.7 92 48.9
Eucgr.K02157 Eucalyptus grandis HOM05D002761 ORTHO05D003351 1.4e-13 79.7 124 41.9
Lj5g0020162 Lotus japonicus HOM05D002761 ORTHO05D003351 1.4e-13 79.7 94 50.0
Psat6g173240 Pisum sativum HOM05D002761 ORTHO05D003351 1.4e-13 79.7 94 51.1
Potri.013G111300 Populus trichocarpa HOM05D002761 ORTHO05D003351 1.4e-13 79.7 90 50.0
COL.COLO4_23637 Corchorus olitorius HOM05D002761 ORTHO05D003351 1.8e-13 79.3 91 50.5
Carub.0001s2218 Capsella rubella HOM05D002761 ORTHO05D003351 2.3e-13 79.0 91 48.4
CAN.G761.16 Capsicum annuum HOM05D002761 ORTHO05D003351 2.3e-13 79.0 93 48.4
Lalb_Chr06g0161951 Lupinus albus HOM05D002761 ORTHO05D003351 2.3e-13 79.0 124 43.5
Thecc.10G143100 Theobroma cacao HOM05D002761 ORTHO05D003351 2.3e-13 79.0 94 48.9
DCAR_001058 Daucus carota HOM05D002761 ORTHO05D003351 3.1e-13 78.6 124 43.5
Thhalv10007128m.g Eutrema salsugineum HOM05D002761 ORTHO05D003351 3.1e-13 78.6 91 48.4
HanXRQChr15g0490731 Helianthus annuus HOM05D002761 ORTHO05D003351 3.1e-13 78.6 93 47.3
Hma1.2p1_0523F.1_g172030 Hydrangea macrophylla HOM05D002761 ORTHO05D003351 3.1e-13 78.6 93 48.4
Lsat_1_v5_gn_4_165000 Lactuca sativa HOM05D002761 ORTHO05D003351 3.1e-13 78.6 91 48.4
Lsat_1_v5_gn_6_104880 Lactuca sativa HOM05D002761 ORTHO05D003351 3.1e-13 78.6 91 48.4
Solyc11g018770.3 Solanum lycopersicum HOM05D002761 ORTHO05D003351 3.1e-13 78.6 93 48.4
Sopen11g009830 Solanum pennellii HOM05D002761 ORTHO05D003351 3.1e-13 78.6 93 48.4
Sopen11g009950 Solanum pennellii HOM05D002761 ORTHO05D003351 3.1e-13 78.6 93 48.4
MELO3C019943.2 Cucumis melo HOM05D002761 ORTHO05D003351 4.0e-13 78.2 94 48.9
CsaV3_6G004730 Cucumis sativus L. HOM05D002761 ORTHO05D003351 4.0e-13 78.2 94 48.9
Eucgr.F03976 Eucalyptus grandis HOM05D002761 ORTHO05D003351 4.0e-13 78.2 124 42.7
HanXRQChr14g0449031 Helianthus annuus HOM05D002761 ORTHO05D003351 4.0e-13 78.2 92 48.9
PGR042G3223 Punica granatum HOM05D002761 ORTHO05D003351 4.0e-13 78.2 92 48.9
THA.LOC104809739 Tarenaya hassleriana HOM05D002761 ORTHO05D003351 4.0e-13 78.2 93 46.2
A09p42070 Brassica napus HOM05D002761 ORTHO05D003351 5.2e-13 77.8 91 47.3
BolC5t30873H Brassica oleracea HOM05D002761 ORTHO05D003351 5.2e-13 77.8 91 47.3
BraA09t39693Z Brassica rapa HOM05D002761 ORTHO05D003351 5.2e-13 77.8 91 47.3
CDE04G1174 Ceratophyllum demersum HOM05D002761 ORTHO05D003351 5.2e-13 77.8 93 49.5
ClCG08G008700 Citrullus lanatus HOM05D002761 ORTHO05D003351 5.2e-13 77.8 92 48.9
Gohir.A05G250400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 5.2e-13 77.8 93 49.5
Gorai.009G263600 Gossypium raimondii HOM05D002761 ORTHO05D003351 5.2e-13 77.8 93 49.5
Lj5A650G23 Lonicera japonica HOM05D002761 ORTHO05D003351 5.2e-13 77.8 36 97.2
arahy.Tifrunner.gnm1.ann1.8YT8MI Arachis hypogaea HOM05D002761 ORTHO05D003351 6.8e-13 77.4 94 50.0
AUR62004635 Chenopodium quinoa HOM05D002761 ORTHO05D003351 6.8e-13 77.4 92 47.8
FAN22G1178 Fragaria x ananassa HOM05D002761 ORTHO05D003351 6.8e-13 77.4 95 45.3
RcHm_v2.0_Chr4g0411681 Rosa chinensis HOM05D002761 ORTHO05D003351 8.9e-13 77.0 95 46.3
TWI34G1193 Tripterygium wilfordii HOM05D002761 ORTHO05D003351 8.9e-13 77.0 91 50.5
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 1.2e-12 76.6 93 46.2
FvH4_4g33440 Fragaria vesca HOM05D002761 ORTHO05D003351 1.2e-12 76.6 95 45.3
FAN12G1608 Fragaria x ananassa HOM05D002761 ORTHO05D003351 1.2e-12 76.6 95 45.3
Gohir.D05G253400 Gossypium hirsutum HOM05D002761 ORTHO05D003351 1.2e-12 76.6 93 48.4
AL1G36200 Arabidopsis lyrata HOM05D002761 ORTHO05D003351 1.5e-12 76.3 91 46.2
Manes.18G102400 Manihot esculenta HOM05D002761 ORTHO05D003351 1.5e-12 76.3 93 48.4
arahy.Tifrunner.gnm1.ann1.3C4BUC Arachis hypogaea HOM05D002761 ORTHO05D003351 2.0e-12 75.9 94 48.9
arahy.Tifrunner.gnm1.ann1.BB8XW9 Arachis hypogaea HOM05D002761 ORTHO05D003351 2.0e-12 75.9 94 48.9
arahy.Tifrunner.gnm1.ann1.SG3J5R Arachis hypogaea HOM05D002761 ORTHO05D003351 2.0e-12 75.9 94 48.9
BcaC06g34983 Brassica carinata HOM05D002761 ORTHO05D003351 2.0e-12 75.9 91 46.2
A07p14260 Brassica napus HOM05D002761 ORTHO05D003351 2.0e-12 75.9 91 46.2
C07p20980 Brassica napus HOM05D002761 ORTHO05D003351 2.0e-12 75.9 91 46.2
BolC7t42629H Brassica oleracea HOM05D002761 ORTHO05D003351 2.0e-12 75.9 91 46.2
BraA07t29183Z Brassica rapa HOM05D002761 ORTHO05D003351 2.0e-12 75.9 91 46.2
Sc01g0001830 Simmondsia chinensis HOM05D002761 ORTHO05D003351 2.0e-12 75.9 91 47.3
Zm00001eb408070 Zea mays HOM05D002761 ORTHO05D003351 2.0e-12 75.9 123 41.5
C05p21800 Brassica napus HOM05D002761 ORTHO05D003351 2.6e-12 75.5 91 46.2
FAN17G0376 Fragaria x ananassa HOM05D002761 ORTHO05D003351 2.6e-12 75.5 95 44.2
Sed0017641 Sechium edule HOM05D002761 ORTHO05D003351 2.6e-12 75.5 94 47.9
AT1G22660 Arabidopsis thaliana HOM05D002761 ORTHO05D003351 3.4e-12 75.1 91 45.1
CARHR023030 Cardamine hirsuta HOM05D002761 ORTHO05D003351 3.4e-12 75.1 90 46.7
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 3.4e-12 75.1 124 40.3
A08p03170 Brassica napus HOM05D002761 ORTHO05D003351 4.4e-12 74.7 92 44.6
BraA08t32349Z Brassica rapa HOM05D002761 ORTHO05D003351 4.4e-12 74.7 92 44.6
Nitab4.5_0000881g0030 Nicotiana tabacum HOM05D002761 ORTHO05D003351 4.4e-12 74.7 63 58.7
AagrBONN_evm.TU.Sc2ySwM_344.827 Anthoceros agrestis HOM05D002761 ORTHO05D003351 5.8e-12 74.3 90 47.8
RcHm_v2.0_Chr7g0192731 Rosa chinensis HOM05D002761 ORTHO05D003351 5.8e-12 74.3 95 45.3
HPP92_003659 Vanilla planifolia HOM05D002761 ORTHO05D003351 5.8e-12 74.3 91 46.2
RcHm_v2.0_Chr4g0442691 Rosa chinensis HOM05D002761 ORTHO05D003351 7.5e-12 73.9 95 45.3
FAN07G1831 Fragaria x ananassa HOM05D002761 ORTHO05D003351 9.9e-12 73.6 95 44.2
PSO210G0794 Papaver somniferum HOM05D002761 ORTHO05D003351 9.9e-12 73.6 92 46.7
BcaB08g37366 Brassica carinata HOM05D002761 ORTHO05D003351 1.3e-11 73.2 90 44.4
BcaC07g41804 Brassica carinata HOM05D002761 ORTHO05D003351 1.7e-11 72.8 87 46.0
Medtr1g096810 Medicago truncatula HOM05D002761 ORTHO05D003351 1.7e-11 72.8 121 41.3
PSO832G2735 Papaver somniferum HOM05D002761 ORTHO05D003351 1.7e-11 72.8 92 45.7
BcaB03g14191 Brassica carinata HOM05D002761 ORTHO05D003351 2.2e-11 72.4 91 44.0
SMO351G0253 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 2.2e-11 72.4 95 45.3
Sed0000900 Sechium edule HOM05D002761 ORTHO05D003351 2.9e-11 72.0 94 45.7
Os12g0171200 Oryza sativa ssp. japonica HOM05D002761 ORTHO05D003351 3.7e-11 71.6 123 39.8
Lsat_1_v5_gn_4_165020 Lactuca sativa HOM05D002761 ORTHO05D003351 4.9e-11 71.2 91 45.1
Lj5A629T18 Lonicera japonica HOM05D002761 ORTHO05D003351 8.3e-11 70.5 44 79.5
Pp3c4_17390 Physcomitrium patens HOM05D002761 ORTHO05D003351 8.3e-11 70.5 90 45.6
SMO111G0069 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 1.1e-10 70.1 94 43.6
SMO111G0222 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 1.1e-10 70.1 94 43.6
SMO351G0639 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 1.1e-10 70.1 94 43.6
Lsat_1_v5_gn_6_104920 Lactuca sativa HOM05D002761 ORTHO05D003351 1.4e-10 69.7 91 44.0
CBR_g3548 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-10 69.3 37 83.8
PSO170G5134 Papaver somniferum HOM05D002761 ORTHO05D003351 2.4e-10 68.9 90 44.4
PSO063G6902 Papaver somniferum HOM05D002761 ORTHO05D003351 3.2e-10 68.6 90 43.3
ECA238G1828 Erigeron canadensis HOM05D002761 ORTHO05D003351 5.4e-10 67.8 92 43.5
CARHR163300 Cardamine hirsuta HOM05D002761 ORTHO05D003351 1.6e-09 66.2 91 42.9
Cc10_g11590 Coffea canephora HOM05D002761 ORTHO05D003351 2.7e-09 65.5 38 76.3
Mapoly0174s0023 Marchantia polymorpha HOM05D002761 ORTHO05D003351 3.5e-09 65.1 115 39.1
PRCOL_00003563 Prasinoderma coloniale HOM05D002761 ORTHO05D003351 3.5e-09 65.1 36 80.6
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 6.0e-09 64.3 86 44.2
RhsimUnG0109800 Rhododendron simsii HOM05D002761 ORTHO05D003351 6.0e-09 64.3 86 44.2
Lsat_1_v5_gn_3_10980 Lactuca sativa HOM05D000331 ORTHO05D000732 7.8e-09 63.9 67 49.3
MCO07G705 Micromonas commoda HOM05D002761 ORTHO05D003351 7.8e-09 63.9 89 41.6
Rhsim06G0031300 Rhododendron simsii HOM05D002761 ORTHO05D003351 7.8e-09 63.9 89 42.7
SMO172G0205 Selaginella moellendorffii HOM05D002761 ORTHO05D003351 7.8e-09 63.9 117 37.6
AagrBONN_evm.TU.Sc2ySwM_117.2494 Anthoceros agrestis HOM05D002761 ORTHO05D003351 1.0e-08 63.5 67 55.2
PSO339G0065 Papaver somniferum HOM05D002761 ORTHO05D003351 1.0e-08 63.5 89 42.7
PSO339G2349 Papaver somniferum HOM05D002761 ORTHO05D003351 1.0e-08 63.5 91 41.8
CARHR103970 Cardamine hirsuta HOM05D002761 ORTHO05D003351 1.3e-08 63.2 35 80.0
LjContig00141g0028023 Lotus japonicus HOM05D002761 ORTHO05D003351 3.0e-08 62.0 92 41.3
Lj4A473G33 Lonicera japonica HOM05D002761 ORTHO05D003351 5.1e-08 61.2 103 39.8
EL10Ac1g00094 Beta vulgaris HOM05D002761 ORTHO05D003351 4.3e-07 58.2 78 47.4
QL08p012793 Quercus lobata HOM05D002761 ORTHO05D003351 4.7e-06 54.7 83 44.6
QL08p012947 Quercus lobata HOM05D002761 ORTHO05D003351 4.7e-06 54.7 83 44.6


User provided reference genes

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