Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A616G4 Lonicera japonica HOM05D002665 ORTHO05D002991 1.2e-114 416.8 250 100.0
CSS0015738 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 2.9e-28 129.8 269 46.8
GSVIVG01035555001 Vitis vinifera HOM05D002665 ORTHO05D002991 4.7e-26 122.5 269 39.4
Cc06_g21730 Coffea canephora HOM05D002665 ORTHO05D002991 2.3e-25 120.2 270 40.4
Prupe.1G455000 Prunus persica HOM05D002665 ORTHO05D002991 1.5e-24 117.5 269 43.5
HanXRQChr17g0537281 Helianthus annuus HOM05D002665 ORTHO05D002991 2.0e-24 117.1 272 39.0
Gohir.A05G065951 Gossypium hirsutum HOM05D002665 ORTHO05D002991 3.3e-24 116.3 269 43.5
Gohir.D05G068300 Gossypium hirsutum HOM05D002665 ORTHO05D002991 9.7e-24 114.8 269 43.1
Gorai.009G069200 Gossypium raimondii HOM05D002665 ORTHO05D002991 9.7e-24 114.8 269 43.1
Sabra18G0001800 Salix brachista HOM05D002665 ORTHO05D002991 4.8e-23 112.5 269 39.8
Cfa013322 Carpinus fangiana HOM05D002665 ORTHO05D002991 8.2e-23 111.7 267 41.2
Duzib168G1639 Durio zibethinus HOM05D002665 ORTHO05D002991 1.1e-22 111.3 242 44.2
MD08G1121400 Malus domestica HOM05D002665 ORTHO05D002991 1.1e-22 111.3 269 42.4
Aqoxy7G02750 Aquilegia oxysepala HOM05D002665 ORTHO05D002991 1.8e-22 110.5 269 40.5
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 2.4e-22 110.2 272 41.5
CiPaw.07G208800 Carya illinoinensis HOM05D002665 ORTHO05D002991 3.1e-22 109.8 269 43.1
Potri.018G003700 Populus trichocarpa HOM05D002665 ORTHO05D002991 5.3e-22 109.0 269 39.4
COL.COLO4_18617 Corchorus olitorius HOM05D002665 ORTHO05D002991 7.0e-22 108.6 269 40.9
ECA240G2840 Erigeron canadensis HOM05D002665 ORTHO05D002991 1.6e-21 107.5 269 40.5
CiPaw.08G022000 Carya illinoinensis HOM05D002665 ORTHO05D002991 2.0e-21 107.1 269 43.1
vmacro20828 Vaccinium macrocarpon HOM05D002665 ORTHO05D002991 2.7e-21 106.7 251 45.8
CsaV3_3G047330 Cucumis sativus L. HOM05D002665 ORTHO05D002991 7.7e-21 105.1 269 43.1
Potri.006G276900 Populus trichocarpa HOM05D002665 ORTHO05D002991 1.7e-20 104.0 264 34.5
TWI34G1233 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 3.8e-20 102.8 269 36.8
Ciclev10008249m.g Citrus clementina HOM05D002665 ORTHO05D002991 5.0e-20 102.4 280 39.3
TWI63G0924 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 6.5e-20 102.1 269 37.5
Duzib168G2001 Durio zibethinus HOM05D002665 ORTHO05D002991 8.5e-20 101.7 274 39.1
MELO3C003595.2 Cucumis melo HOM05D002665 ORTHO05D002991 1.1e-19 101.3 269 43.1
Manes.03G002000 Manihot esculenta HOM05D002665 ORTHO05D002991 1.1e-19 101.3 269 37.9
CSS0011343 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.5e-19 100.9 269 43.5
CSS0018914 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.5e-19 100.9 269 43.5
Eucgr.C02115 Eucalyptus grandis HOM05D002665 ORTHO05D002991 2.5e-19 100.1 269 40.5
Peaxi162Scf00324g00228 Petunia axillaris HOM05D002665 ORTHO05D002991 4.2e-19 99.4 262 42.7
QL12p026047 Quercus lobata HOM05D002665 ORTHO05D002991 4.2e-19 99.4 269 40.1
TAR625G0782 Trochodendron aralioides HOM05D002665 ORTHO05D002991 4.2e-19 99.4 269 42.0
Dinv26437 Davidia involucrata HOM05D002665 ORTHO05D002991 5.5e-19 99.0 247 44.1
Dinv13248 Davidia involucrata HOM05D002665 ORTHO05D002991 1.2e-18 97.8 262 40.8
Hund03271 Selenicereus undatus HOM05D002665 ORTHO05D002991 1.2e-18 97.8 269 40.5
Nitab4.5_0001392g0090 Nicotiana tabacum HOM05D002665 ORTHO05D002991 1.6e-18 97.4 263 37.3
Prupe.1G078300 Prunus persica HOM05D002665 ORTHO05D002991 1.6e-18 97.4 265 41.9
Solyc07g008970.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 1.6e-18 97.4 269 41.3
MD15G1100200 Malus domestica HOM05D002665 ORTHO05D002991 2.7e-18 96.7 269 39.8
Nitab4.5_0004459g0010 Nicotiana tabacum HOM05D002665 ORTHO05D002991 2.7e-18 96.7 262 42.4
Ca_15631_v3 Cicer arietinum L. HOM05D002665 ORTHO05D002991 6.1e-18 95.5 270 40.4
HanXRQChr03g0082951 Helianthus annuus HOM05D002665 ORTHO05D002991 6.1e-18 95.5 269 42.8
DCAR_019798 Daucus carota HOM05D002665 ORTHO05D002991 8.0e-18 95.1 183 44.8
MSTRG.11823 Avicennia marina HOM05D002665 ORTHO05D002991 1.4e-17 94.4 269 38.3
FvH4_2g36360 Fragaria vesca HOM05D002665 ORTHO05D002991 1.4e-17 94.4 269 36.8
RcHm_v2.0_Chr6g0305521 Rosa chinensis HOM05D002665 ORTHO05D002991 1.4e-17 94.4 269 39.4
Lj1g0017245 Lotus japonicus HOM05D002665 ORTHO05D002991 3.0e-17 93.2 269 40.1
Nn2g12753 Nelumbo nucifera HOM05D002665 ORTHO05D002991 3.0e-17 93.2 270 35.6
Sopen07g004920 Solanum pennellii HOM05D002665 ORTHO05D002991 3.0e-17 93.2 270 41.9
MBI13_g31541_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 5.2e-17 92.4 270 38.9
Sed0013595 Sechium edule HOM05D002665 ORTHO05D002991 5.2e-17 92.4 269 42.4
DCAR_004551 Daucus carota HOM05D002665 ORTHO05D002991 8.8e-17 91.7 242 33.5
Sopen08g022940 Solanum pennellii HOM05D002665 ORTHO05D002991 1.2e-16 91.3 269 37.9
PGR044G2224 Punica granatum HOM05D002665 ORTHO05D002991 1.5e-16 90.9 271 31.4
CAN.G195.4 Capsicum annuum HOM05D002665 ORTHO05D002991 2.0e-16 90.5 269 37.9
Glyma.06G080100 Glycine max HOM05D002665 ORTHO05D002991 2.0e-16 90.5 271 39.5
Sc06g0001220 Simmondsia chinensis HOM05D002665 ORTHO05D002991 2.0e-16 90.5 268 38.4
CANSAT25G0789 Cannabis sativa HOM05D002665 ORTHO05D002991 2.6e-16 90.1 269 39.4
HanXRQChr17g0538701 Helianthus annuus HOM05D002665 ORTHO05D002991 3.4e-16 89.7 269 40.1
ECA240G1424 Erigeron canadensis HOM05D002665 ORTHO05D002991 7.5e-16 88.6 271 39.5
FAN27G0789 Fragaria x ananassa HOM05D002665 ORTHO05D002991 7.5e-16 88.6 274 31.4
Solyc08g074290.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 7.5e-16 88.6 269 37.2
EL10Ac2g03706 Beta vulgaris HOM05D002665 ORTHO05D002991 1.3e-15 87.8 268 38.1
Lsat_1_v5_gn_3_24601 Lactuca sativa HOM05D002665 ORTHO05D002991 1.3e-15 87.8 269 39.0
Lj8C424T3 Lonicera japonica HOM05D002665 ORTHO05D002991 1.3e-15 87.8 135 34.8
Lj8C430T1 Lonicera japonica HOM05D002665 ORTHO05D002991 1.3e-15 87.8 135 34.8
TAR383G0456 Trochodendron aralioides HOM05D002665 ORTHO05D002991 2.2e-15 87.0 241 38.6
Lalb_Chr23g0269331 Lupinus albus HOM05D002665 ORTHO05D002991 2.8e-15 86.7 269 40.1
Haze_21811 Corylus avellana HOM05D002665 ORTHO05D002991 3.7e-15 86.3 198 41.4
PSO170G0184 Papaver somniferum HOM05D002665 ORTHO05D002991 3.7e-15 86.3 269 41.3
RcHm_v2.0_Chr4g0399971 Rosa chinensis HOM05D002665 ORTHO05D002991 4.8e-15 85.9 272 27.6
PGSC0003DMG400028754 Solanum tuberosum HOM05D002665 ORTHO05D002991 4.8e-15 85.9 269 39.4
FAN12G2632 Fragaria x ananassa HOM05D002665 ORTHO05D002991 6.3e-15 85.5 253 28.9
Peaxi162Scf00045g01455 Petunia axillaris HOM05D002665 ORTHO05D002991 6.3e-15 85.5 271 38.7
Medtr3g109330 Medicago truncatula HOM05D002665 ORTHO05D002991 8.3e-15 85.1 269 39.8
Actinidia01290 Actinidia chinensis HOM05D002665 ORTHO05D002991 1.1e-14 84.7 136 34.6
CAN.G940.9 Capsicum annuum HOM05D002665 ORTHO05D002991 1.1e-14 84.7 268 39.2
Oeu026032.1 Olea europaea HOM05D002665 ORTHO05D002991 1.1e-14 84.7 278 34.9
AUR62038745 Chenopodium quinoa HOM05D002665 ORTHO05D002991 1.4e-14 84.3 268 37.7
Migut.E01410 Erythranthe guttata HOM05D002665 ORTHO05D002991 2.4e-14 83.6 266 33.5
FAN15G1304 Fragaria x ananassa HOM05D002665 ORTHO05D002991 2.4e-14 83.6 278 30.9
ECA246G1443 Erigeron canadensis HOM05D002665 ORTHO05D002991 3.1e-14 83.2 269 36.8
Lalb_Chr11g0064281 Lupinus albus HOM05D002665 ORTHO05D002991 4.1e-14 82.8 269 39.8
VMungo1309G0855 Vigna mungo HOM05D002665 ORTHO05D002991 4.1e-14 82.8 273 38.5
Cc00_g12740 Coffea canephora HOM05D002665 ORTHO05D002991 5.4e-14 82.4 269 37.9
Thecc.09G183600 Theobroma cacao HOM05D002665 ORTHO05D002991 5.4e-14 82.4 235 25.1
Nitab4.5_0000860g0180 Nicotiana tabacum HOM05D002665 ORTHO05D002991 7.0e-14 82.0 186 47.8
Lsat_1_v5_gn_5_59921 Lactuca sativa HOM05D002665 ORTHO05D002991 9.1e-14 81.6 269 40.1
PSO144G0166 Papaver somniferum HOM05D002665 ORTHO05D002991 9.1e-14 81.6 269 40.9
Sc09g0007840 Simmondsia chinensis HOM05D002665 ORTHO05D002991 1.2e-13 81.3 239 36.0
CARHR239220 Cardamine hirsuta HOM05D002665 ORTHO05D002991 1.6e-13 80.9 269 38.3
Sabra06G0214600 Salix brachista HOM05D002665 ORTHO05D002991 2.7e-13 80.1 136 33.1
SGA_v2.0_scaffold27G11647 Striga asiatica HOM05D002665 ORTHO05D002991 2.7e-13 80.1 285 35.8
Psat5g023040 Pisum sativum HOM05D002665 ORTHO05D002991 3.5e-13 79.7 252 42.1
TPR.G1355 Trifolium pratense HOM05D002665 ORTHO05D002991 3.5e-13 79.7 269 33.8
Os09g0497700 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 4.5e-13 79.3 269 34.2
TAR626G1487 Trochodendron aralioides HOM05D002665 ORTHO05D002991 5.9e-13 79.0 194 44.8
A03p60640 Brassica napus HOM05D002665 ORTHO05D002991 1.0e-12 78.2 267 36.0
Peaxi162Scf00213g00118 Petunia axillaris HOM05D002665 ORTHO05D002991 1.7e-12 77.4 271 36.9
TWI32G0516 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 1.7e-12 77.4 287 38.3
Nn8g40895 Nelumbo nucifera HOM05D002665 ORTHO05D002991 2.3e-12 77.0 269 37.2
MBI16_g34881_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 2.9e-12 76.6 137 32.1
Atru.chr7.2676 Acer truncatum HOM05D002665 ORTHO05D002991 3.8e-12 76.3 135 33.3
C07p58550 Brassica napus HOM05D002665 ORTHO05D002991 3.8e-12 76.3 267 35.6
BolC7t46310H Brassica oleracea HOM05D002665 ORTHO05D002991 3.8e-12 76.3 267 35.6
ClCG11G013940 Citrullus lanatus HOM05D002665 ORTHO05D002991 5.0e-12 75.9 269 39.4
Migut.A00460 Erythranthe guttata HOM05D002665 ORTHO05D002991 5.0e-12 75.9 269 36.1
BraA03t15106Z Brassica rapa HOM05D002665 ORTHO05D002991 6.5e-12 75.5 267 35.2
Nitab4.5_0000919g0110 Nicotiana tabacum HOM05D002665 ORTHO05D002991 6.5e-12 75.5 278 36.0
AT4G31340 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 8.6e-12 75.1 269 36.8
Lalb_Chr08g0243391 Lupinus albus HOM05D002665 ORTHO05D002991 8.6e-12 75.1 269 37.2
Os08g0519400 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 8.6e-12 75.1 263 38.8
Carub.0007s0922 Capsella rubella HOM05D002665 ORTHO05D002991 1.1e-11 74.7 269 36.1
Thhalv10025225m.g Eutrema salsugineum HOM05D002665 ORTHO05D002991 1.1e-11 74.7 269 34.2
unitig_747.g21906 Utricularia gibba HOM05D002665 ORTHO05D002991 1.1e-11 74.7 263 39.2
Nitab4.5_0006603g0020 Nicotiana tabacum HOM05D002665 ORTHO05D002991 1.5e-11 74.3 241 36.9
arahy.Tifrunner.gnm1.ann1.D04E55 Arachis hypogaea HOM05D002665 ORTHO05D002991 1.9e-11 73.9 269 36.4
BcaNung01529 Brassica carinata HOM05D002665 ORTHO05D002684 1.9e-11 73.9 266 35.3
THA.LOC104814666 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 1.9e-11 73.9 263 21.7
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 2.5e-11 73.6 270 38.1
AL7G20740 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 2.5e-11 73.6 269 37.5
arahy.Tifrunner.gnm1.ann1.DQG69K Arachis hypogaea HOM05D002665 ORTHO05D002991 2.5e-11 73.6 269 36.4
MSTRG.1740 Avicennia marina HOM05D002665 ORTHO05D002991 2.5e-11 73.6 269 30.9
Oeu002014.1 Olea europaea HOM05D002665 ORTHO05D002991 3.2e-11 73.2 269 33.8
FAN12G2110 Fragaria x ananassa HOM05D002665 ORTHO05D002991 4.2e-11 72.8 246 28.5
AL4G14850 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 5.5e-11 72.4 269 34.2
Hma1.2p1_0891F.1_g233110 Hydrangea macrophylla HOM05D002665 ORTHO05D002991 5.5e-11 72.4 269 39.0
Hund19391 Selenicereus undatus HOM05D002665 ORTHO05D002991 9.5e-11 71.6 136 30.1
Actinidia22249 Actinidia chinensis HOM05D002665 ORTHO05D002991 1.2e-10 71.2 136 31.6
AT2G24420 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 1.6e-10 70.9 269 33.8
Dinv36353 Davidia involucrata HOM05D002665 ORTHO05D002991 1.6e-10 70.9 241 39.8
Lsat_1_v5_gn_7_55401 Lactuca sativa HOM05D002665 ORTHO05D002991 2.8e-10 70.1 241 37.3
Aa31LG7G11370 Aethionema arabicum HOM05D002665 ORTHO05D002991 3.6e-10 69.7 264 33.3
Sp7g29200 Schrenkiella parvula HOM05D002665 ORTHO05D002991 6.1e-10 68.9 269 33.8
Aa31LG2G19020 Aethionema arabicum HOM05D002665 ORTHO05D002991 8.0e-10 68.6 269 36.4
Cpa.g.sc328.1 Carica papaya HOM05D002665 ORTHO05D002991 8.0e-10 68.6 132 31.8
Zm00001eb035730 Zea mays HOM05D002665 ORTHO05D002991 1.0e-09 68.2 263 35.7
FAN20G2144 Fragaria x ananassa HOM05D002665 ORTHO05D002991 2.3e-09 67.0 93 40.9
Oeu059295.1 Olea europaea HOM05D002665 ORTHO05D002991 2.3e-09 67.0 138 31.2
TAR383G0485 Trochodendron aralioides HOM05D002665 ORTHO05D002991 5.2e-09 65.9 135 32.6
MSTRG.19380 Avicennia marina HOM05D002665 ORTHO05D002991 6.8e-09 65.5 135 28.1
BcaC09g51913 Brassica carinata HOM05D002665 ORTHO05D002991 6.8e-09 65.5 266 32.3
BolC1t00751H Brassica oleracea HOM05D002665 ORTHO05D002991 6.8e-09 65.5 266 32.3
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 8.8e-09 65.1 271 36.2
A01p06970 Brassica napus HOM05D002665 ORTHO05D002991 1.2e-08 64.7 266 32.7
BraA01t00645Z Brassica rapa HOM05D002665 ORTHO05D002991 1.2e-08 64.7 266 32.7
Phvul.009G104300 Phaseolus vulgaris HOM05D002665 ORTHO05D002991 1.2e-08 64.7 268 37.3
Glyma.04G078500 Glycine max HOM05D002665 ORTHO05D002991 1.5e-08 64.3 44 65.9
SGA_v2.0_scaffold169G38589 Striga asiatica HOM05D000033 ORTHO05D001317 1.5e-08 64.3 136 27.9
BcaNung05320 Brassica carinata HOM05D002665 ORTHO05D002991 2.0e-08 63.9 266 33.1
Hma1.2p1_0891F.1_g233120 Hydrangea macrophylla HOM05D002665 ORTHO05D002991 2.0e-08 63.9 44 70.5
Solyc05g010750.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 3.4e-08 63.2 130 26.2
Cpa.g.sc95.23 Carica papaya HOM05D002665 ORTHO05D002991 5.7e-08 62.4 122 32.0
C01p07700 Brassica napus HOM05D002665 ORTHO05D002991 1.3e-07 61.2 269 32.3
FvH4_4g07490 Fragaria vesca HOM05D002665 ORTHO05D002991 1.3e-07 61.2 136 31.6
Zm00001eb174670 Zea mays HOM05D002665 ORTHO05D002991 1.7e-07 60.8 264 34.8
THA.LOC104803590 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 2.2e-07 60.5 264 34.5
THA.LOC104803883 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 2.2e-07 60.5 264 31.8
Potri.006G076700 Populus trichocarpa HOM05D002665 ORTHO05D002991 3.7e-07 59.7 37 64.9
AUR62020636 Chenopodium quinoa HOM05D002665 ORTHO05D002991 4.9e-07 59.3 258 37.6
HanXRQChr13g0411771 Helianthus annuus HOM05D002665 ORTHO05D002991 4.9e-07 59.3 239 38.1
PGSC0003DMG400014854 Solanum tuberosum HOM05D002665 ORTHO05D002991 6.3e-07 58.9 259 36.7
Ah.11g044010 Amaranthus hybridus HOM05D002665 ORTHO05D002991 8.3e-07 58.5 136 25.7
BcaC07g40934 Brassica carinata HOM05D002665 ORTHO05D002991 8.3e-07 58.5 263 27.8
Sp4g03440 Schrenkiella parvula HOM05D002665 ORTHO05D002991 1.8e-06 57.4 263 37.3
MD15G1100300 Malus domestica HOM05D002665 ORTHO05D002991 3.1e-06 56.6 246 23.6
Oeu055447.1 Olea europaea HOM05D002665 ORTHO05D002991 3.1e-06 56.6 269 33.5
BcaC02g08457 Brassica carinata HOM05D002665 ORTHO05D002991 5.4e-06 55.8 135 24.4
A09p56320 Brassica napus HOM05D002665 ORTHO05D002991 5.4e-06 55.8 263 32.3
CDE06G0091 Ceratophyllum demersum HOM05D002665 ORTHO05D002991 7.0e-06 55.5 139 24.5


User provided reference genes

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