Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A604G7 Lonicera japonica HOM05D041301 ORTHO05D235222 8.6e-81 303.5 146 100.0
Lj5E603T0 Lonicera japonica HOM05D041301 ORTHO05D234250 1.3e-47 193.4 100 91.0
Lj5A674T9 Lonicera japonica HOM05D000013 ORTHO05D234986 1.2e-13 80.5 116 44.8
Oeu050801.1 Olea europaea HOM05D000022 ORTHO05D000071 1.5e-11 73.6 121 33.1
MELO3C007354.2 Cucumis melo HOM05D000022 ORTHO05D000071 2.7e-10 69.3 98 36.7
Thecc.06G210200 Theobroma cacao HOM05D000022 ORTHO05D000071 3.0e-09 65.9 104 30.8
CsaV3_6G049390 Cucumis sativus L. HOM05D000022 ORTHO05D000306 5.2e-09 65.1 98 33.7
Dinv17841 Davidia involucrata HOM05D000022 ORTHO05D000306 6.7e-09 64.7 91 39.6
Oeu016729.1 Olea europaea HOM05D000022 ORTHO05D000071 6.7e-09 64.7 86 40.7
Prupe.6G184100 Prunus persica HOM05D000022 ORTHO05D000306 6.7e-09 64.7 108 31.5
TPR.G15759 Trifolium pratense HOM05D000022 ORTHO05D000306 6.7e-09 64.7 100 38.0
Eucgr.D00835 Eucalyptus grandis HOM05D000022 ORTHO05D000306 8.8e-09 64.3 112 28.6
Oeu035922.1 Olea europaea HOM05D000022 ORTHO05D000071 8.8e-09 64.3 120 32.5
Migut.M01270 Erythranthe guttata HOM05D000022 ORTHO05D000071 1.2e-08 63.9 87 37.9
Duzib160G0050 Durio zibethinus HOM05D000022 ORTHO05D000071 1.5e-08 63.5 99 34.3
Eucgr.D00839 Eucalyptus grandis HOM05D000022 ORTHO05D000306 1.5e-08 63.5 112 28.6
Medtr1g021642 Medicago truncatula HOM05D000022 ORTHO05D000071 2.0e-08 63.2 100 38.0
Prupe.6G184500 Prunus persica HOM05D000022 ORTHO05D000071 2.0e-08 63.2 97 30.9
CANSAT56G2864 Cannabis sativa HOM05D000022 ORTHO05D000071 2.6e-08 62.8 89 37.1
MELO3C002501.2 Cucumis melo HOM05D000022 ORTHO05D000071 2.6e-08 62.8 123 30.1
HanXRQChr15g0471351 Helianthus annuus HOM05D000022 ORTHO05D000071 2.6e-08 62.8 98 35.7
MD01G1027900 Malus domestica HOM05D000022 ORTHO05D000071 2.6e-08 62.8 94 31.9
Manes.16G018032 Manihot esculenta HOM05D000022 ORTHO05D000071 2.6e-08 62.8 98 35.7
CANSAT56G0384 Cannabis sativa HOM05D000022 ORTHO05D000071 3.3e-08 62.4 88 36.4
Lsat_1_v5_gn_7_17880 Lactuca sativa HOM05D000022 ORTHO05D000071 3.3e-08 62.4 121 31.4
TWI38G0604 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 3.3e-08 62.4 84 33.3
Prupe.6G183500 Prunus persica HOM05D000022 ORTHO05D000071 4.4e-08 62.0 96 31.2
Thecc.06G210500 Theobroma cacao HOM05D000022 ORTHO05D000071 4.4e-08 62.0 104 29.8
MELO3C002496.2 Cucumis melo HOM05D000022 ORTHO05D000071 5.7e-08 61.6 86 38.4
CsaV3_1G011210 Cucumis sativus L. HOM05D000022 ORTHO05D000306 7.5e-08 61.2 98 35.7
HanXRQChr10g0304631 Helianthus annuus HOM05D000022 ORTHO05D000306 7.5e-08 61.2 118 27.1
Prupe.6G184400 Prunus persica HOM05D000022 ORTHO05D000071 7.5e-08 61.2 91 33.0
Rhsim07G0196100 Rhododendron simsii HOM05D000022 ORTHO05D000306 7.5e-08 61.2 98 36.7
Gohir.D06G125400 Gossypium hirsutum HOM05D000022 ORTHO05D000071 9.7e-08 60.8 104 27.9
Potri.004G026350 Populus trichocarpa HOM05D000022 ORTHO05D000071 9.7e-08 60.8 95 35.8
CANSAT54G1332 Cannabis sativa HOM05D000022 ORTHO05D000306 1.3e-07 60.5 99 35.4
LjContig00408g0014473 Lotus japonicus HOM05D000022 ORTHO05D000071 1.3e-07 60.5 94 33.0
RhsimUnG0078600 Rhododendron simsii HOM05D000022 ORTHO05D000306 1.3e-07 60.5 86 36.0
RcHm_v2.0_Chr5g0004301 Rosa chinensis HOM05D000022 ORTHO05D000306 1.3e-07 60.5 101 37.6
Rhsim02G0114400 Rhododendron simsii HOM05D000022 ORTHO05D000071 1.7e-07 60.1 101 38.6
ClCG01G022270 Citrullus lanatus HOM05D000022 ORTHO05D000071 2.2e-07 59.7 88 33.0
DCAR_008118 Daucus carota HOM05D000022 ORTHO05D000071 2.2e-07 59.7 87 42.5
arahy.Tifrunner.gnm1.ann1.R4IR89 Arachis hypogaea HOM05D000022 ORTHO05D000071 2.8e-07 59.3 86 32.6
Ciclev10018168m.g Citrus clementina HOM05D000022 ORTHO05D000306 2.8e-07 59.3 118 28.8
CiPaw.04G093500 Carya illinoinensis HOM05D000022 ORTHO05D000071 3.7e-07 58.9 84 35.7
Nitab4.5_0000900g0120 Nicotiana tabacum HOM05D000022 ORTHO05D000071 3.7e-07 58.9 103 29.1
Phvul.007G050200 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 3.7e-07 58.9 119 31.1
QL10p044882 Quercus lobata HOM05D000022 ORTHO05D000071 3.7e-07 58.9 102 31.4
Rhsim07G0197100 Rhododendron simsii HOM05D000022 ORTHO05D000306 3.7e-07 58.9 107 34.6
SalBow8G0016 Salvia bowleyana HOM05D000022 ORTHO05D000071 3.7e-07 58.9 96 33.3
EL10Ac7g17984 Beta vulgaris HOM05D000022 ORTHO05D000306 4.8e-07 58.5 112 34.8
CiPaw.07G066000 Carya illinoinensis HOM05D000022 ORTHO05D000071 4.8e-07 58.5 86 36.0
Nn1g03701 Nelumbo nucifera HOM05D000022 ORTHO05D000071 4.8e-07 58.5 99 32.3
Sed0003484 Sechium edule HOM05D000022 ORTHO05D000071 4.8e-07 58.5 87 39.1
arahy.Tifrunner.gnm1.ann1.RB6BXY Arachis hypogaea HOM05D000022 ORTHO05D000071 6.3e-07 58.2 86 32.6
Manes.16G017900 Manihot esculenta HOM05D000022 ORTHO05D000071 6.3e-07 58.2 94 29.8
Lj1C1223T0 Lonicera japonica HOM05D000022 ORTHO05D000306 8.2e-07 57.8 98 34.7
LjContig00408g0021573 Lotus japonicus HOM05D000022 ORTHO05D000071 8.2e-07 57.8 86 33.7
Oeu050796.1 Olea europaea HOM05D000022 ORTHO05D000071 8.2e-07 57.8 118 29.7
Potri.011G028500 Populus trichocarpa HOM05D000022 ORTHO05D000306 8.2e-07 57.8 98 32.7
QL09p026146 Quercus lobata HOM05D000022 ORTHO05D000071 8.2e-07 57.8 140 25.7
Rhsim07G0197300 Rhododendron simsii HOM05D000022 ORTHO05D000306 8.2e-07 57.8 100 38.0
Aqoxy7G00437 Aquilegia oxysepala HOM05D000022 ORTHO05D000306 1.1e-06 57.4 102 38.2
CiPaw.09G091400 Carya illinoinensis HOM05D000022 ORTHO05D000306 1.1e-06 57.4 87 35.6
MBI18_g26658_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 1.1e-06 57.4 104 33.7
QL02p041952 Quercus lobata HOM05D000022 ORTHO05D000306 1.1e-06 57.4 86 32.6
QL09p045759 Quercus lobata HOM05D000022 ORTHO05D000306 1.1e-06 57.4 101 35.6
QL10p045526 Quercus lobata HOM05D000022 ORTHO05D000306 1.1e-06 57.4 116 31.0
RcHm_v2.0_Chr5g0004371 Rosa chinensis HOM05D000022 ORTHO05D000071 1.1e-06 57.4 99 33.3
CANSAT54G2321 Cannabis sativa HOM05D000022 ORTHO05D000071 1.4e-06 57.0 99 34.3
COL.COLO4_35557 Corchorus olitorius HOM05D000022 ORTHO05D000306 1.4e-06 57.0 104 26.9
Dinv17842 Davidia involucrata HOM05D000022 ORTHO05D000306 1.4e-06 57.0 102 37.3
Dinv20005 Davidia involucrata HOM05D000022 ORTHO05D000071 1.4e-06 57.0 98 30.6
ECA236G2403 Erigeron canadensis HOM05D000022 ORTHO05D000071 1.4e-06 57.0 132 29.5
HanXRQChr05g0130671 Helianthus annuus HOM05D000022 ORTHO05D000071 1.4e-06 57.0 88 40.9
HanXRQChr15g0473401 Helianthus annuus HOM05D000022 ORTHO05D000071 1.4e-06 57.0 125 27.2
MD05G1337300 Malus domestica HOM05D000022 ORTHO05D000071 1.4e-06 57.0 85 30.6
Oeu050797.1 Olea europaea HOM05D000022 ORTHO05D000071 1.4e-06 57.0 86 33.7
Prupe.4G028700 Prunus persica HOM05D000022 ORTHO05D000071 1.4e-06 57.0 87 34.5
Sed0000762 Sechium edule HOM05D000022 ORTHO05D000071 1.4e-06 57.0 99 34.3
Solyc02g080050.1 Solanum lycopersicum HOM05D000022 ORTHO05D000306 1.4e-06 57.0 91 33.0
Thecc.06G212800 Theobroma cacao HOM05D000022 ORTHO05D000071 1.4e-06 57.0 86 31.4
CANSAT56G2126 Cannabis sativa HOM05D000022 ORTHO05D000071 1.8e-06 56.6 88 34.1
CARHR252350 Cardamine hirsuta HOM05D000022 ORTHO05D000071 1.8e-06 56.6 105 31.4
CsaV3_1G011200 Cucumis sativus L. HOM05D000022 ORTHO05D000071 1.8e-06 56.6 86 34.9
Eucgr.D00833 Eucalyptus grandis HOM05D000022 ORTHO05D000071 1.8e-06 56.6 86 32.6
Glyma.10G253100 Glycine max HOM05D000022 ORTHO05D000071 1.8e-06 56.6 86 33.7
Glyma.20G137700 Glycine max HOM05D000022 ORTHO05D000071 1.8e-06 56.6 103 29.1
Prupe.6G183600 Prunus persica HOM05D000022 ORTHO05D000071 1.8e-06 56.6 73 37.0
Rhsim07G0196200 Rhododendron simsii HOM05D000022 ORTHO05D000306 1.8e-06 56.6 86 34.9
VMungo0720G0057 Vigna mungo HOM05D000022 ORTHO05D000071 1.8e-06 56.6 99 34.3
GSVIVG01006683001 Vitis vinifera HOM05D000022 ORTHO05D000071 1.8e-06 56.6 98 32.7
ATR0753G130 Amborella trichopoda HOM05D000022 ORTHO05D000306 2.4e-06 56.2 92 34.8
CiPaw.09G082700 Carya illinoinensis HOM05D000022 ORTHO05D000071 2.4e-06 56.2 85 30.6
Glyma.18G152600 Glycine max HOM05D000022 ORTHO05D000306 2.4e-06 56.2 96 34.4
Lalb_Chr02g0144801 Lupinus albus HOM05D000022 ORTHO05D000071 2.4e-06 56.2 94 30.9
Nn1g03702 Nelumbo nucifera HOM05D000022 ORTHO05D000071 2.4e-06 56.2 98 32.7
Phvul.007G048900 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 2.4e-06 56.2 99 34.3
Rhsim07G0196700 Rhododendron simsii HOM05D000022 ORTHO05D000306 2.4e-06 56.2 98 32.7
RcHm_v2.0_Chr6g0299021 Rosa chinensis HOM05D000022 ORTHO05D000071 2.4e-06 56.2 99 29.3
Ciclev10015972m.g Citrus clementina HOM05D000022 ORTHO05D000306 3.1e-06 55.8 105 32.4
Hma1.2p1_1679F.1_g297090 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 3.1e-06 55.8 103 29.1
MD02G1101400 Malus domestica HOM05D000022 ORTHO05D000071 3.1e-06 55.8 89 29.2
QL09p045775 Quercus lobata HOM05D000022 ORTHO05D000306 3.1e-06 55.8 101 34.7
TPR.G15752 Trifolium pratense HOM05D000022 ORTHO05D000306 3.1e-06 55.8 100 34.0
VMungo0720G1674 Vigna mungo HOM05D000022 ORTHO05D000071 3.1e-06 55.8 101 34.7
Haze_06719 Corylus avellana HOM05D000022 ORTHO05D000071 4.1e-06 55.5 87 32.2
MELO3C002495.2 Cucumis melo HOM05D000022 ORTHO05D000071 4.1e-06 55.5 86 33.7
Dinv18933 Davidia involucrata HOM05D000022 ORTHO05D000306 4.1e-06 55.5 98 31.6
Eucgr.E03589 Eucalyptus grandis HOM05D000022 ORTHO05D000071 4.1e-06 55.5 92 33.7
FAN15G0188 Fragaria x ananassa HOM05D000022 ORTHO05D000071 4.1e-06 55.5 99 29.3
Lj5g0008090 Lotus japonicus HOM05D000022 ORTHO05D000071 4.1e-06 55.5 106 32.1
Nitab4.5_0006238g0020 Nicotiana tabacum HOM05D000022 ORTHO05D000071 4.1e-06 55.5 88 31.8
Oeu016148.1 Olea europaea HOM05D000022 ORTHO05D000071 4.1e-06 55.5 118 28.8
Thecc.06G212700 Theobroma cacao HOM05D000022 ORTHO05D000071 4.1e-06 55.5 97 27.8
TPR.G5549 Trifolium pratense HOM05D000022 ORTHO05D000306 4.1e-06 55.5 90 35.6
TWI38G0808 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 4.1e-06 55.5 87 34.5
TWI38G1685 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 4.1e-06 55.5 100 30.0
GSVIVG01006740001 Vitis vinifera HOM05D000022 ORTHO05D000071 4.1e-06 55.5 100 34.0
Glyma.20G138700 Glycine max HOM05D000022 ORTHO05D000071 5.3e-06 55.1 98 32.7
Glyma.20G139300 Glycine max HOM05D000022 ORTHO05D000071 5.3e-06 55.1 120 30.0
MD05G1163600 Malus domestica HOM05D000022 ORTHO05D000306 5.3e-06 55.1 134 30.6
Rhsim07G0195500 Rhododendron simsii HOM05D000022 ORTHO05D000306 5.3e-06 55.1 98 34.7
THA.LOC104814510 Tarenaya hassleriana HOM05D000022 ORTHO05D000071 5.3e-06 55.1 99 32.3
AUR62012591 Chenopodium quinoa HOM05D000022 ORTHO05D000071 7.0e-06 54.7 86 30.2
Eucgr.E03046 Eucalyptus grandis HOM05D000022 ORTHO05D000071 7.0e-06 54.7 120 28.3
HanXRQChr06g0171611 Helianthus annuus HOM05D000022 ORTHO05D000306 7.0e-06 54.7 119 27.7
MD05G1336800 Malus domestica HOM05D000022 ORTHO05D000071 7.0e-06 54.7 87 29.9
Nn1g03697 Nelumbo nucifera HOM05D000022 ORTHO05D000071 7.0e-06 54.7 99 30.3
Psat6g010400 Pisum sativum HOM05D000022 ORTHO05D000071 7.0e-06 54.7 86 34.9
Prupe.8G086600 Prunus persica HOM05D000022 ORTHO05D000306 7.0e-06 54.7 98 29.6
Rhsim07G0197700 Rhododendron simsii HOM05D000022 ORTHO05D000071 7.0e-06 54.7 100 35.0
TWI38G1721 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 7.0e-06 54.7 100 29.0
TWI38G1850 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 7.0e-06 54.7 88 33.0
CANSAT56G4236 Cannabis sativa HOM05D000022 ORTHO05D000071 9.1e-06 54.3 86 33.7
Haze_06711 Corylus avellana HOM05D000022 ORTHO05D000071 9.1e-06 54.3 88 35.2
FAN24G0706 Fragaria x ananassa HOM05D000022 ORTHO05D000071 9.1e-06 54.3 99 29.3
FAN27G2441 Fragaria x ananassa HOM05D000022 ORTHO05D000071 9.1e-06 54.3 99 29.3
Glyma.20G138000 Glycine max HOM05D000022 ORTHO05D000306 9.1e-06 54.3 99 31.3
Lj5C604T2 Lonicera japonica HOM05D041301 ORTHO05D234108 9.1e-06 54.3 47 51.1
MBI18_g26660_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 9.1e-06 54.3 86 37.2
RcHm_v2.0_Chr6g0299011 Rosa chinensis HOM05D000022 ORTHO05D000071 9.1e-06 54.3 99 28.3
VMungo0720G2926 Vigna mungo HOM05D000022 ORTHO05D000071 9.1e-06 54.3 101 34.7


User provided reference genes

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